© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauG2|1307 |
| Gene name | |
| Location | Contig_1386:2963..4040 |
| Strand | - |
| Gene length (bp) | 1077 |
| Transcript length (bp) | 807 |
| Coding sequence length (bp) | 807 |
| Protein length (aa) | 269 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04114 | Gaa1 | Gaa1-like, GPI transamidase component | 6.0E-66 | 120 | 263 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P39012|GAA1_YEAST | GPI transamidase component GAA1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GAA1 PE=1 SV=1 | 15 | 256 | 3.0E-53 |
| sp|Q9US48|GAA1_SCHPO | GPI transamidase component gaa1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gaa1 PE=3 SV=1 | 5 | 255 | 2.0E-45 |
| sp|Q9WTK3|GPAA1_MOUSE | Glycosylphosphatidylinositol anchor attachment 1 protein OS=Mus musculus GN=Gpaa1 PE=1 SV=3 | 4 | 266 | 8.0E-28 |
| sp|O43292|GPAA1_HUMAN | Glycosylphosphatidylinositol anchor attachment 1 protein OS=Homo sapiens GN=GPAA1 PE=1 SV=3 | 4 | 250 | 4.0E-25 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0042765 | GPI-anchor transamidase complex | Yes |
| GO:0098796 | membrane protein complex | No |
| GO:0008303 | caspase complex | No |
| GO:0032991 | protein-containing complex | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0140534 | endoplasmic reticulum protein-containing complex | No |
| GO:1905369 | endopeptidase complex | No |
| GO:1902494 | catalytic complex | No |
| GO:0005575 | cellular_component | No |
| GO:1905368 | peptidase complex | No |
| GO:0110165 | cellular anatomical entity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 20 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 20 | 39 | 19 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauG2|1307 MSRLLSSALSLRRDPRILKFPPYLSLLCITIGIAWLFLLPIENYSRRTYISENALLPGQVHTYFGGSERNVFRAY GQELEALADESNHSINDKLETMLEGVGIKVGRQNYTYHSAGQIYSGENLYGILQAPRGDATEAIVLVAAWKSIEG ELNRNGVALALTLARYFRRWSLWSKDIILVVPPDSKIGTQAWVDAYHDAHDANWVASLPLKSGALQGAIAIDYPW QQRFEGIHIIYDGTNGQLPNLDLINSIINIAGGQMGSRPCSEE* |
| Coding | >OphauG2|1307 ATGTCACGGTTGCTTTCCTCTGCGCTGTCGCTTCGACGCGATCCACGGATACTTAAATTTCCACCGTATCTATCC TTGCTATGCATCACTATAGGCATCGCCTGGCTGTTCTTGTTGCCTATCGAGAACTACTCCCGTCGAACTTATATA TCCGAAAATGCGCTTCTCCCGGGCCAGGTACACACATATTTTGGTGGTAGCGAGCGGAATGTGTTCCGAGCATAT GGCCAAGAACTGGAAGCACTAGCCGATGAAAGCAATCATTCCATCAATGACAAACTCGAGACCATGCTCGAGGGC GTTGGCATCAAAGTCGGAAGGCAAAATTACACTTACCACTCCGCAGGTCAGATCTACTCGGGCGAAAATCTATAC GGAATCCTACAAGCACCCAGAGGAGATGCAACCGAAGCCATTGTCCTTGTTGCCGCATGGAAGAGCATCGAGGGC GAGCTGAATCGCAATGGCGTGGCACTAGCATTGACATTGGCTCGCTATTTTAGACGTTGGTCTCTATGGTCCAAG GATATAATCTTAGTGGTGCCTCCCGACAGCAAAATTGGAACACAAGCCTGGGTTGATGCCTACCACGATGCTCAT GATGCTAATTGGGTCGCCTCGCTACCCCTCAAATCTGGAGCTCTCCAGGGTGCCATTGCAATAGACTATCCGTGG CAGCAGCGATTCGAGGGCATTCATATTATATACGACGGCACCAATGGGCAGCTCCCCAATCTCGACCTGATTAAT TCCATCATTAATATCGCCGGTGGTCAGATGGGCTCAAGACCATGCTCCGAGGAATGA |
| Transcript | >OphauG2|1307 ATGTCACGGTTGCTTTCCTCTGCGCTGTCGCTTCGACGCGATCCACGGATACTTAAATTTCCACCGTATCTATCC TTGCTATGCATCACTATAGGCATCGCCTGGCTGTTCTTGTTGCCTATCGAGAACTACTCCCGTCGAACTTATATA TCCGAAAATGCGCTTCTCCCGGGCCAGGTACACACATATTTTGGTGGTAGCGAGCGGAATGTGTTCCGAGCATAT GGCCAAGAACTGGAAGCACTAGCCGATGAAAGCAATCATTCCATCAATGACAAACTCGAGACCATGCTCGAGGGC GTTGGCATCAAAGTCGGAAGGCAAAATTACACTTACCACTCCGCAGGTCAGATCTACTCGGGCGAAAATCTATAC GGAATCCTACAAGCACCCAGAGGAGATGCAACCGAAGCCATTGTCCTTGTTGCCGCATGGAAGAGCATCGAGGGC GAGCTGAATCGCAATGGCGTGGCACTAGCATTGACATTGGCTCGCTATTTTAGACGTTGGTCTCTATGGTCCAAG GATATAATCTTAGTGGTGCCTCCCGACAGCAAAATTGGAACACAAGCCTGGGTTGATGCCTACCACGATGCTCAT GATGCTAATTGGGTCGCCTCGCTACCCCTCAAATCTGGAGCTCTCCAGGGTGCCATTGCAATAGACTATCCGTGG CAGCAGCGATTCGAGGGCATTCATATTATATACGACGGCACCAATGGGCAGCTCCCCAATCTCGACCTGATTAAT TCCATCATTAATATCGCCGGTGGTCAGATGGGCTCAAGACCATGCTCCGAGGAATGA |
| Gene | >OphauG2|1307 ATGTCACGGTTGCTTTGTAAGTGACCGCCAGCATTGATCTACTACCCTGAGAGGCCTGCTTATATTAAGGTGGCG TAGCCTCTGCGCTGTCGCTTCGACGCGATCCACGGATACTTAAATTTCCACCGTATCTATCCTTGCTATGCATCA CTATAGGCATCGCCTGGCTGTTCTTGTTGCCTATCGAGAACTACTCCCGTCGAACTTATATATCCGAAAATGCGC TTCTCCCGGGCCAGGTACACACATATTTTGGTGGTAGCGAGCGGAATGTGTTCCGAGCATATGGCCAAGAACTGG AAGCACTAGCCGATGAAAGCAATCATTCGTACGTCCATCTCGAGTCCCGAACCAGCCAAAGATTATATACGAGGA ATAGCGCATTGACCGATTGTCCCTCAGCATCAATGACAAACTCGAGACCATGCTCGAGGGCGTTGGCATCAAAGT CGGAAGGCAAAATTACACTTACCACTCCGCAGGTCAGATCTACTCGGGCGAAAATCTATACGGAATCCTACAAGC ACCCAGAGGAGATGCAACCGAAGCCATTGTCCTTGTTGCCGCATGGAAGAGCATCGAGGGCGAGCTGAATCGCAA TGGCGTGGCACTAGCATTGACATTGGCTCGCTATTTTAGACGCAAGTTAATGAAGCCCAGTTGCCATTATTAATG GCCAATGAATCTGAGCTTATCCACGTACTAATTGTAATTATACAGGTTGGTCTCTATGGTCCAAGGATATAATCT TAGTGGTGCCTCCCGACAGCAAAATTGGAACACAAGCCTGGGTTGATGCCTACCACGATGCTCATGATGCTAATT GGGTCGCCTCGCTACCCCTCAAATCTGGAGCTCTCCAGGGTGCCATTGCAATAGACTATCCGTGGCAGCAGCGAT TCGAGGGCATTCATATTATATACGACGGCACCAATGGGCAGCTCCCCAATCTCGACCTGATTAATTCCATCATTA ATATCGCCGGTGGTCAGATGGGTATGCAAACAGTTATTCAAGATATGAAACACCATACAGGTCGTTATTCGGATA GGCTCAAGACCATGCTCCGAGGAATGA |