© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauG2|122 |
| Gene name | |
| Location | Contig_1013:709..2072 |
| Strand | - |
| Gene length (bp) | 1363 |
| Transcript length (bp) | 1278 |
| Coding sequence length (bp) | 1278 |
| Protein length (aa) | 426 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF13532 | 2OG-FeII_Oxy_2 | 2OG-Fe(II) oxygenase superfamily | 2.1E-36 | 113 | 334 |
| PF06839 | zf-GRF | GRF zinc finger | 1.3E-09 | 347 | 391 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q5XIC8|ALKB3_RAT | Alpha-ketoglutarate-dependent dioxygenase alkB homolog 3 OS=Rattus norvegicus GN=Alkbh3 PE=2 SV=1 | 231 | 346 | 9.0E-10 |
| sp|Q8K1E6|ALKB3_MOUSE | Alpha-ketoglutarate-dependent dioxygenase alkB homolog 3 OS=Mus musculus GN=Alkbh3 PE=1 SV=1 | 231 | 347 | 9.0E-10 |
| sp|Q96Q83|ALKB3_HUMAN | Alpha-ketoglutarate-dependent dioxygenase alkB homolog 3 OS=Homo sapiens GN=ALKBH3 PE=1 SV=1 | 231 | 346 | 1.0E-08 |
| sp|Q32L00|ALKB3_BOVIN | Alpha-ketoglutarate-dependent dioxygenase alkB homolog 3 OS=Bos taurus GN=ALKBH3 PE=2 SV=1 | 231 | 334 | 1.0E-08 |
| sp|Q9SIE0|ALKB2_ARATH | DNA oxidative demethylase ALKBH2 OS=Arabidopsis thaliana GN=ALKBH2 PE=2 SV=2 | 231 | 334 | 1.0E-07 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0008270 | zinc ion binding | Yes |
| GO:0003674 | molecular_function | No |
| GO:0046914 | transition metal ion binding | No |
| GO:0046872 | metal ion binding | No |
| GO:0043169 | cation binding | No |
| GO:0005488 | binding | No |
| GO:0043167 | ion binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 23 | 0.45 |
| Transcription Factor Class (based on PFAM domains) |
|---|
| Zinc finger, GRF-type |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauG2|122 MQDETTEVKVALLASLHGDVDHETLLNLIVAHNGSVSQASLALQSRQAGATKDKASEDKASEDNASGRRQQSLKR YATASDNGHGAKKPNVRWKKGSTLHLYDADDVSQHTPCSIIHNFLPAHEADELLRELLDEAKTFQKSTFKLFDQV VSSRHTSSFYVESYEALQGQKADYYYNGSKLTDVRPITRQLSNVKPVVQMAVNSEMERRIRTRYPGGQKLKHQSG DEWVPNMAFVNCYQGGDESVGWHSDQLTYLGPRAVIGSLSLGVAREFRVRRVCPASGEAAGQIAIHLPHNSLLVM HAEMQEEWKHCVAPAASIDPHPVAGNRRINITYRHYRDYMHPRHTPRCSCAVPCVLRVVQKRPGNQGRYFWMCHA GNVPGKQACCFFQWAEFDCHGKPLLPSEPSACNKKAEAAMEPTRVEPRDG* |
| Coding | >OphauG2|122 ATGCAAGACGAAACAACCGAAGTAAAGGTGGCGCTGCTTGCGTCGCTCCATGGCGACGTTGACCACGAAACGCTT CTCAATCTTATTGTGGCACACAATGGCTCCGTCAGTCAGGCGTCGCTGGCTCTGCAGTCCAGGCAGGCTGGGGCG ACGAAAGACAAAGCATCGGAAGACAAAGCATCGGAAGACAACGCATCGGGCCGCCGCCAGCAGTCCCTCAAGCGA TACGCAACGGCTTCCGACAATGGGCATGGGGCCAAGAAGCCGAATGTGAGGTGGAAAAAGGGAAGCACGCTGCAC CTTTACGATGCCGACGACGTGTCCCAACACACGCCATGCAGCATTATCCACAACTTCCTGCCGGCACACGAGGCC GACGAGCTGCTACGGGAGCTCCTCGACGAGGCCAAGACGTTCCAGAAGTCGACGTTTAAGCTCTTTGACCAGGTG GTGTCGAGTCGGCACACGTCGAGCTTCTACGTGGAGAGCTACGAAGCCTTGCAGGGGCAAAAGGCCGACTACTAC TACAATGGGTCCAAGCTGACGGACGTGCGGCCCATTACGCGGCAGCTCAGCAATGTCAAGCCCGTGGTGCAAATG GCTGTCAACTCGGAAATGGAGCGTCGCATCAGGACGCGCTATCCCGGGGGCCAGAAACTCAAGCACCAATCGGGC GACGAATGGGTGCCCAACATGGCCTTTGTCAACTGCTACCAGGGCGGCGACGAGAGCGTGGGCTGGCACAGCGAC CAACTGACGTATCTGGGCCCACGGGCCGTCATTGGCTCGCTGTCGCTGGGCGTGGCGCGCGAGTTTCGCGTACGG CGAGTGTGTCCCGCATCGGGCGAGGCCGCGGGCCAGATAGCCATTCACCTGCCTCACAATTCGCTGCTCGTCATG CACGCCGAGATGCAGGAGGAGTGGAAGCATTGCGTGGCCCCCGCCGCGTCAATAGACCCGCACCCGGTGGCGGGC AACAGGCGCATCAACATCACCTACCGGCATTACCGCGACTACATGCATCCGCGCCACACGCCACGCTGCTCCTGT GCCGTGCCCTGTGTGTTGCGCGTTGTGCAAAAGAGGCCGGGCAACCAGGGCCGGTACTTTTGGATGTGCCACGCC GGCAACGTGCCGGGGAAGCAGGCCTGTTGCTTTTTCCAATGGGCCGAGTTTGACTGTCATGGGAAGCCACTGCTG CCCAGCGAGCCGTCGGCGTGCAACAAGAAAGCCGAGGCCGCAATGGAGCCAACTCGCGTGGAGCCAAGAGACGGC TGA |
| Transcript | >OphauG2|122 ATGCAAGACGAAACAACCGAAGTAAAGGTGGCGCTGCTTGCGTCGCTCCATGGCGACGTTGACCACGAAACGCTT CTCAATCTTATTGTGGCACACAATGGCTCCGTCAGTCAGGCGTCGCTGGCTCTGCAGTCCAGGCAGGCTGGGGCG ACGAAAGACAAAGCATCGGAAGACAAAGCATCGGAAGACAACGCATCGGGCCGCCGCCAGCAGTCCCTCAAGCGA TACGCAACGGCTTCCGACAATGGGCATGGGGCCAAGAAGCCGAATGTGAGGTGGAAAAAGGGAAGCACGCTGCAC CTTTACGATGCCGACGACGTGTCCCAACACACGCCATGCAGCATTATCCACAACTTCCTGCCGGCACACGAGGCC GACGAGCTGCTACGGGAGCTCCTCGACGAGGCCAAGACGTTCCAGAAGTCGACGTTTAAGCTCTTTGACCAGGTG GTGTCGAGTCGGCACACGTCGAGCTTCTACGTGGAGAGCTACGAAGCCTTGCAGGGGCAAAAGGCCGACTACTAC TACAATGGGTCCAAGCTGACGGACGTGCGGCCCATTACGCGGCAGCTCAGCAATGTCAAGCCCGTGGTGCAAATG GCTGTCAACTCGGAAATGGAGCGTCGCATCAGGACGCGCTATCCCGGGGGCCAGAAACTCAAGCACCAATCGGGC GACGAATGGGTGCCCAACATGGCCTTTGTCAACTGCTACCAGGGCGGCGACGAGAGCGTGGGCTGGCACAGCGAC CAACTGACGTATCTGGGCCCACGGGCCGTCATTGGCTCGCTGTCGCTGGGCGTGGCGCGCGAGTTTCGCGTACGG CGAGTGTGTCCCGCATCGGGCGAGGCCGCGGGCCAGATAGCCATTCACCTGCCTCACAATTCGCTGCTCGTCATG CACGCCGAGATGCAGGAGGAGTGGAAGCATTGCGTGGCCCCCGCCGCGTCAATAGACCCGCACCCGGTGGCGGGC AACAGGCGCATCAACATCACCTACCGGCATTACCGCGACTACATGCATCCGCGCCACACGCCACGCTGCTCCTGT GCCGTGCCCTGTGTGTTGCGCGTTGTGCAAAAGAGGCCGGGCAACCAGGGCCGGTACTTTTGGATGTGCCACGCC GGCAACGTGCCGGGGAAGCAGGCCTGTTGCTTTTTCCAATGGGCCGAGTTTGACTGTCATGGGAAGCCACTGCTG CCCAGCGAGCCGTCGGCGTGCAACAAGAAAGCCGAGGCCGCAATGGAGCCAACTCGCGTGGAGCCAAGAGACGGC TGA |
| Gene | >OphauG2|122 ATGCAAGACGAAACAACCGAAGTAAAGGTGGCGCTGCTTGCGTCGCTCCATGGCGACGTTGACCACGAAACGCTT CTCAATCTTATTGTGGCACACAATGGCTCCGTCAGTCAGGCGTCGCTGGCTCTGCAGTCCAGGCAGGCTGGGGCG ACGAAAGACAAAGCATCGGAAGACAAAGCATCGGAAGACAACGCATCGGGCCGCCGCCAGCAGTCCCTCAAGCGA TACGCAACGGCTTCCGACAATGGGCATGGGGCCAAGAAGCCGAATGTGAGGTGGAAAAAGGGAAGCACGCTGCAC CTTTACGATGCCGACGACGTGTCCCAACACACGCCATGCAGCATTATCCACAACTTCCTGCCGGCACACGAGGCC GACGAGCTGCTACGGGAGCTCCTCGACGAGGCCAAGACGTTCCAGAAGTCGACGTTTAAGCTCTTTGACCAGGTG GTGTCGAGTCGGCACACGTCGAGCTTCTACGTGGAGAGCTACGAAGCCTTGCAGGGGCAAAAGGCCGACTACTAC TACAATGGGTCCAAGCTGACGGCAAGTGGTTGTCTTGGGGCCAAGACTCAACCCCATGATGCAACATGTCGCAAA TTGGGCGAGAGGCTGACTGGCGGCGGCGCAGGACGTGCGGCCCATTACGCGGCAGCTCAGCAATGTCAAGCCCGT GGTGCAAATGGCTGTCAACTCGGAAATGGAGCGTCGCATCAGGACGCGCTATCCCGGGGGCCAGAAACTCAAGCA CCAATCGGGCGACGAATGGGTGCCCAACATGGCCTTTGTCAACTGCTACCAGGGCGGCGACGAGAGCGTGGGCTG GCACAGCGACCAACTGACGTATCTGGGCCCACGGGCCGTCATTGGCTCGCTGTCGCTGGGCGTGGCGCGCGAGTT TCGCGTACGGCGAGTGTGTCCCGCATCGGGCGAGGCCGCGGGCCAGATAGCCATTCACCTGCCTCACAATTCGCT GCTCGTCATGCACGCCGAGATGCAGGAGGAGTGGAAGCATTGCGTGGCCCCCGCCGCGTCAATAGACCCGCACCC GGTGGCGGGCAACAGGCGCATCAACATCACCTACCGGCATTACCGCGACTACATGCATCCGCGCCACACGCCACG CTGCTCCTGTGCCGTGCCCTGTGTGTTGCGCGTTGTGCAAAAGAGGCCGGGCAACCAGGGCCGGTACTTTTGGAT GTGCCACGCCGGCAACGTGCCGGGGAAGCAGGCCTGTTGCTTTTTCCAATGGGCCGAGTTTGACTGTCATGGGAA GCCACTGCTGCCCAGCGAGCCGTCGGCGTGCAACAAGAAAGCCGAGGCCGCAATGGAGCCAACTCGCGTGGAGCC AAGAGACGGCTGA |