© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | OphauG2|1211 |
| Gene name | |
| Location | Contig_135:3476..4415 |
| Strand | + |
| Gene length (bp) | 939 |
| Transcript length (bp) | 939 |
| Coding sequence length (bp) | 939 |
| Protein length (aa) | 313 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF07890 | Rrp15p | Rrp15p | 9.1E-34 | 151 | 297 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9UTD7|RRP15_SCHPO | Ribosomal RNA-processing protein 15 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rrp15 PE=3 SV=1 | 149 | 299 | 2.0E-08 |
| sp|Q06511|RRP15_YEAST | Ribosomal RNA-processing protein 15 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RRP15 PE=1 SV=1 | 139 | 302 | 1.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006364 | rRNA processing | Yes |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0016072 | rRNA metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0008152 | metabolic process | No |
| GO:0006396 | RNA processing | No |
| GO:0034660 | ncRNA metabolic process | No |
| GO:0034470 | ncRNA processing | No |
| GO:0009987 | cellular process | No |
| GO:0046483 | heterocycle metabolic process | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0090304 | nucleic acid metabolic process | No |
| GO:0006139 | nucleobase-containing compound metabolic process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0016070 | RNA metabolic process | No |
| GO:0006725 | cellular aromatic compound metabolic process | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 49 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauG2|1211 MKTREMASRTNKKRGTDSKTQRPSKKQKRQQEYHSGSESDVSNEVDGIGLLDSDDDVHDLEVDEAKDVGDSDSSG SSEGVYTTKLAAKMETTHTKPKVSVKSSAEASSSGDDGYGDQDEDGQDDSDLDQDDAGSDTGGKKSTSKRNDPSA FATSISKILSTKISASKRSDPVLSRSAAAHEASKAVLDGALETKARRQLKEQKRKALEKGRIKDVLMAPKKEENG EPEMTTAEIMETEKKLRKTAHRGVVKMFNAVRAAQVKASEAERLVRKEGVIGIGQRELKAKELSKKGFLELIASG GGGLKKGGLEEA* |
| Coding | >OphauG2|1211 ATGAAGACCAGAGAAATGGCTAGCCGAACGAATAAGAAGCGAGGAACAGACAGCAAAACACAGCGACCGTCCAAA AAACAAAAAAGACAACAAGAATACCACAGCGGCTCTGAGAGCGACGTAAGTAATGAGGTCGACGGCATCGGACTG CTCGACTCTGATGACGACGTACACGATCTTGAGGTGGACGAAGCCAAGGATGTCGGCGACAGTGACTCATCAGGT TCCTCGGAAGGAGTATACACCACGAAACTTGCAGCCAAGATGGAGACGACACATACAAAACCGAAGGTGTCAGTC AAAAGCTCAGCAGAAGCCAGCTCCAGCGGCGATGATGGCTATGGCGATCAAGATGAGGACGGGCAGGACGATTCA GACCTAGACCAAGATGACGCAGGCTCAGATACGGGCGGTAAAAAGTCGACATCCAAACGAAACGATCCATCTGCG TTTGCAACGTCCATATCCAAAATTCTTTCCACTAAAATCTCAGCATCGAAAAGAAGTGACCCGGTATTGTCGAGA AGTGCTGCTGCGCACGAAGCGTCAAAAGCTGTCCTAGATGGTGCTCTAGAGACCAAGGCGCGACGGCAACTCAAA GAGCAGAAACGAAAGGCATTGGAAAAAGGCCGCATCAAAGATGTCTTGATGGCACCCAAAAAGGAAGAAAATGGC GAGCCAGAAATGACAACGGCTGAAATCATGGAGACTGAGAAGAAGCTTCGAAAAACGGCGCACCGAGGCGTGGTC AAAATGTTTAATGCCGTGAGAGCGGCTCAGGTCAAGGCGTCAGAGGCCGAGCGACTTGTCAGAAAAGAAGGCGTC ATTGGCATTGGTCAACGGGAGCTCAAAGCTAAAGAACTGAGCAAAAAGGGGTTTCTGGAACTCATTGCGTCAGGA GGTGGCGGCCTCAAAAAGGGTGGACTCGAGGAAGCTTGA |
| Transcript | >OphauG2|1211 ATGAAGACCAGAGAAATGGCTAGCCGAACGAATAAGAAGCGAGGAACAGACAGCAAAACACAGCGACCGTCCAAA AAACAAAAAAGACAACAAGAATACCACAGCGGCTCTGAGAGCGACGTAAGTAATGAGGTCGACGGCATCGGACTG CTCGACTCTGATGACGACGTACACGATCTTGAGGTGGACGAAGCCAAGGATGTCGGCGACAGTGACTCATCAGGT TCCTCGGAAGGAGTATACACCACGAAACTTGCAGCCAAGATGGAGACGACACATACAAAACCGAAGGTGTCAGTC AAAAGCTCAGCAGAAGCCAGCTCCAGCGGCGATGATGGCTATGGCGATCAAGATGAGGACGGGCAGGACGATTCA GACCTAGACCAAGATGACGCAGGCTCAGATACGGGCGGTAAAAAGTCGACATCCAAACGAAACGATCCATCTGCG TTTGCAACGTCCATATCCAAAATTCTTTCCACTAAAATCTCAGCATCGAAAAGAAGTGACCCGGTATTGTCGAGA AGTGCTGCTGCGCACGAAGCGTCAAAAGCTGTCCTAGATGGTGCTCTAGAGACCAAGGCGCGACGGCAACTCAAA GAGCAGAAACGAAAGGCATTGGAAAAAGGCCGCATCAAAGATGTCTTGATGGCACCCAAAAAGGAAGAAAATGGC GAGCCAGAAATGACAACGGCTGAAATCATGGAGACTGAGAAGAAGCTTCGAAAAACGGCGCACCGAGGCGTGGTC AAAATGTTTAATGCCGTGAGAGCGGCTCAGGTCAAGGCGTCAGAGGCCGAGCGACTTGTCAGAAAAGAAGGCGTC ATTGGCATTGGTCAACGGGAGCTCAAAGCTAAAGAACTGAGCAAAAAGGGGTTTCTGGAACTCATTGCGTCAGGA GGTGGCGGCCTCAAAAAGGGTGGACTCGAGGAAGCTTGA |
| Gene | >OphauG2|1211 ATGAAGACCAGAGAAATGGCTAGCCGAACGAATAAGAAGCGAGGAACAGACAGCAAAACACAGCGACCGTCCAAA AAACAAAAAAGACAACAAGAATACCACAGCGGCTCTGAGAGCGACGTAAGTAATGAGGTCGACGGCATCGGACTG CTCGACTCTGATGACGACGTACACGATCTTGAGGTGGACGAAGCCAAGGATGTCGGCGACAGTGACTCATCAGGT TCCTCGGAAGGAGTATACACCACGAAACTTGCAGCCAAGATGGAGACGACACATACAAAACCGAAGGTGTCAGTC AAAAGCTCAGCAGAAGCCAGCTCCAGCGGCGATGATGGCTATGGCGATCAAGATGAGGACGGGCAGGACGATTCA GACCTAGACCAAGATGACGCAGGCTCAGATACGGGCGGTAAAAAGTCGACATCCAAACGAAACGATCCATCTGCG TTTGCAACGTCCATATCCAAAATTCTTTCCACTAAAATCTCAGCATCGAAAAGAAGTGACCCGGTATTGTCGAGA AGTGCTGCTGCGCACGAAGCGTCAAAAGCTGTCCTAGATGGTGCTCTAGAGACCAAGGCGCGACGGCAACTCAAA GAGCAGAAACGAAAGGCATTGGAAAAAGGCCGCATCAAAGATGTCTTGATGGCACCCAAAAAGGAAGAAAATGGC GAGCCAGAAATGACAACGGCTGAAATCATGGAGACTGAGAAGAAGCTTCGAAAAACGGCGCACCGAGGCGTGGTC AAAATGTTTAATGCCGTGAGAGCGGCTCAGGTCAAGGCGTCAGAGGCCGAGCGACTTGTCAGAAAAGAAGGCGTC ATTGGCATTGGTCAACGGGAGCTCAAAGCTAAAGAACTGAGCAAAAAGGGGTTTCTGGAACTCATTGCGTCAGGA GGTGGCGGCCTCAAAAAGGGTGGACTCGAGGAAGCTTGA |