Fungal Genomics

at Utrecht University

General Properties

Protein IDOphauG2|1211
Gene name
LocationContig_135:3476..4415
Strand+
Gene length (bp)939
Transcript length (bp)939
Coding sequence length (bp)939
Protein length (aa) 313

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF07890 Rrp15p Rrp15p 9.1E-34 151 297

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|Q9UTD7|RRP15_SCHPO Ribosomal RNA-processing protein 15 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rrp15 PE=3 SV=1 149 299 2.0E-08
sp|Q06511|RRP15_YEAST Ribosomal RNA-processing protein 15 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RRP15 PE=1 SV=1 139 302 1.0E-06

GO

GO Term Description Terminal node
GO:0006364 rRNA processing Yes
GO:0043170 macromolecule metabolic process No
GO:0044238 primary metabolic process No
GO:0016072 rRNA metabolic process No
GO:0008150 biological_process No
GO:0008152 metabolic process No
GO:0006396 RNA processing No
GO:0034660 ncRNA metabolic process No
GO:0034470 ncRNA processing No
GO:0009987 cellular process No
GO:0046483 heterocycle metabolic process No
GO:1901360 organic cyclic compound metabolic process No
GO:0006807 nitrogen compound metabolic process No
GO:0071704 organic substance metabolic process No
GO:0090304 nucleic acid metabolic process No
GO:0006139 nucleobase-containing compound metabolic process No
GO:0044237 cellular metabolic process No
GO:0016070 RNA metabolic process No
GO:0006725 cellular aromatic compound metabolic process No
GO:0034641 cellular nitrogen compound metabolic process No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 49 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >OphauG2|1211
MKTREMASRTNKKRGTDSKTQRPSKKQKRQQEYHSGSESDVSNEVDGIGLLDSDDDVHDLEVDEAKDVGDSDSSG
SSEGVYTTKLAAKMETTHTKPKVSVKSSAEASSSGDDGYGDQDEDGQDDSDLDQDDAGSDTGGKKSTSKRNDPSA
FATSISKILSTKISASKRSDPVLSRSAAAHEASKAVLDGALETKARRQLKEQKRKALEKGRIKDVLMAPKKEENG
EPEMTTAEIMETEKKLRKTAHRGVVKMFNAVRAAQVKASEAERLVRKEGVIGIGQRELKAKELSKKGFLELIASG
GGGLKKGGLEEA*
Coding >OphauG2|1211
ATGAAGACCAGAGAAATGGCTAGCCGAACGAATAAGAAGCGAGGAACAGACAGCAAAACACAGCGACCGTCCAAA
AAACAAAAAAGACAACAAGAATACCACAGCGGCTCTGAGAGCGACGTAAGTAATGAGGTCGACGGCATCGGACTG
CTCGACTCTGATGACGACGTACACGATCTTGAGGTGGACGAAGCCAAGGATGTCGGCGACAGTGACTCATCAGGT
TCCTCGGAAGGAGTATACACCACGAAACTTGCAGCCAAGATGGAGACGACACATACAAAACCGAAGGTGTCAGTC
AAAAGCTCAGCAGAAGCCAGCTCCAGCGGCGATGATGGCTATGGCGATCAAGATGAGGACGGGCAGGACGATTCA
GACCTAGACCAAGATGACGCAGGCTCAGATACGGGCGGTAAAAAGTCGACATCCAAACGAAACGATCCATCTGCG
TTTGCAACGTCCATATCCAAAATTCTTTCCACTAAAATCTCAGCATCGAAAAGAAGTGACCCGGTATTGTCGAGA
AGTGCTGCTGCGCACGAAGCGTCAAAAGCTGTCCTAGATGGTGCTCTAGAGACCAAGGCGCGACGGCAACTCAAA
GAGCAGAAACGAAAGGCATTGGAAAAAGGCCGCATCAAAGATGTCTTGATGGCACCCAAAAAGGAAGAAAATGGC
GAGCCAGAAATGACAACGGCTGAAATCATGGAGACTGAGAAGAAGCTTCGAAAAACGGCGCACCGAGGCGTGGTC
AAAATGTTTAATGCCGTGAGAGCGGCTCAGGTCAAGGCGTCAGAGGCCGAGCGACTTGTCAGAAAAGAAGGCGTC
ATTGGCATTGGTCAACGGGAGCTCAAAGCTAAAGAACTGAGCAAAAAGGGGTTTCTGGAACTCATTGCGTCAGGA
GGTGGCGGCCTCAAAAAGGGTGGACTCGAGGAAGCTTGA
Transcript >OphauG2|1211
ATGAAGACCAGAGAAATGGCTAGCCGAACGAATAAGAAGCGAGGAACAGACAGCAAAACACAGCGACCGTCCAAA
AAACAAAAAAGACAACAAGAATACCACAGCGGCTCTGAGAGCGACGTAAGTAATGAGGTCGACGGCATCGGACTG
CTCGACTCTGATGACGACGTACACGATCTTGAGGTGGACGAAGCCAAGGATGTCGGCGACAGTGACTCATCAGGT
TCCTCGGAAGGAGTATACACCACGAAACTTGCAGCCAAGATGGAGACGACACATACAAAACCGAAGGTGTCAGTC
AAAAGCTCAGCAGAAGCCAGCTCCAGCGGCGATGATGGCTATGGCGATCAAGATGAGGACGGGCAGGACGATTCA
GACCTAGACCAAGATGACGCAGGCTCAGATACGGGCGGTAAAAAGTCGACATCCAAACGAAACGATCCATCTGCG
TTTGCAACGTCCATATCCAAAATTCTTTCCACTAAAATCTCAGCATCGAAAAGAAGTGACCCGGTATTGTCGAGA
AGTGCTGCTGCGCACGAAGCGTCAAAAGCTGTCCTAGATGGTGCTCTAGAGACCAAGGCGCGACGGCAACTCAAA
GAGCAGAAACGAAAGGCATTGGAAAAAGGCCGCATCAAAGATGTCTTGATGGCACCCAAAAAGGAAGAAAATGGC
GAGCCAGAAATGACAACGGCTGAAATCATGGAGACTGAGAAGAAGCTTCGAAAAACGGCGCACCGAGGCGTGGTC
AAAATGTTTAATGCCGTGAGAGCGGCTCAGGTCAAGGCGTCAGAGGCCGAGCGACTTGTCAGAAAAGAAGGCGTC
ATTGGCATTGGTCAACGGGAGCTCAAAGCTAAAGAACTGAGCAAAAAGGGGTTTCTGGAACTCATTGCGTCAGGA
GGTGGCGGCCTCAAAAAGGGTGGACTCGAGGAAGCTTGA
Gene >OphauG2|1211
ATGAAGACCAGAGAAATGGCTAGCCGAACGAATAAGAAGCGAGGAACAGACAGCAAAACACAGCGACCGTCCAAA
AAACAAAAAAGACAACAAGAATACCACAGCGGCTCTGAGAGCGACGTAAGTAATGAGGTCGACGGCATCGGACTG
CTCGACTCTGATGACGACGTACACGATCTTGAGGTGGACGAAGCCAAGGATGTCGGCGACAGTGACTCATCAGGT
TCCTCGGAAGGAGTATACACCACGAAACTTGCAGCCAAGATGGAGACGACACATACAAAACCGAAGGTGTCAGTC
AAAAGCTCAGCAGAAGCCAGCTCCAGCGGCGATGATGGCTATGGCGATCAAGATGAGGACGGGCAGGACGATTCA
GACCTAGACCAAGATGACGCAGGCTCAGATACGGGCGGTAAAAAGTCGACATCCAAACGAAACGATCCATCTGCG
TTTGCAACGTCCATATCCAAAATTCTTTCCACTAAAATCTCAGCATCGAAAAGAAGTGACCCGGTATTGTCGAGA
AGTGCTGCTGCGCACGAAGCGTCAAAAGCTGTCCTAGATGGTGCTCTAGAGACCAAGGCGCGACGGCAACTCAAA
GAGCAGAAACGAAAGGCATTGGAAAAAGGCCGCATCAAAGATGTCTTGATGGCACCCAAAAAGGAAGAAAATGGC
GAGCCAGAAATGACAACGGCTGAAATCATGGAGACTGAGAAGAAGCTTCGAAAAACGGCGCACCGAGGCGTGGTC
AAAATGTTTAATGCCGTGAGAGCGGCTCAGGTCAAGGCGTCAGAGGCCGAGCGACTTGTCAGAAAAGAAGGCGTC
ATTGGCATTGGTCAACGGGAGCTCAAAGCTAAAGAACTGAGCAAAAAGGGGTTTCTGGAACTCATTGCGTCAGGA
GGTGGCGGCCTCAAAAAGGGTGGACTCGAGGAAGCTTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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