Fungal Genomics

at Utrecht University

General Properties

Protein IDOphauG2|1051
Gene name
LocationContig_129:9085..10137
Strand+
Gene length (bp)1052
Transcript length (bp)855
Coding sequence length (bp)855
Protein length (aa) 285

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01956 EMC3_TMCO1 Integral membrane protein EMC3/TMCO1-like 7.1E-53 34 225

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q9P787|YNY3_SCHPO ER membrane protein complex subunit 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC1711.03 PE=3 SV=1 30 280 4.0E-78
sp|Q3ZCB8|EMC3_BOVIN ER membrane protein complex subunit 3 OS=Bos taurus GN=EMC3 PE=2 SV=3 36 280 8.0E-52
sp|Q5U2V8|EMC3_RAT ER membrane protein complex subunit 3 OS=Rattus norvegicus GN=Emc3 PE=2 SV=3 36 280 9.0E-52
sp|Q99KI3|EMC3_MOUSE ER membrane protein complex subunit 3 OS=Mus musculus GN=Emc3 PE=1 SV=3 36 280 9.0E-52
sp|Q5R7C1|EMC3_PONAB ER membrane protein complex subunit 3 OS=Pongo abelii GN=EMC3 PE=2 SV=3 36 280 9.0E-52
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Swissprot ID Swissprot Description Start End E-value
sp|Q9P787|YNY3_SCHPO ER membrane protein complex subunit 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC1711.03 PE=3 SV=1 30 280 4.0E-78
sp|Q3ZCB8|EMC3_BOVIN ER membrane protein complex subunit 3 OS=Bos taurus GN=EMC3 PE=2 SV=3 36 280 8.0E-52
sp|Q5U2V8|EMC3_RAT ER membrane protein complex subunit 3 OS=Rattus norvegicus GN=Emc3 PE=2 SV=3 36 280 9.0E-52
sp|Q99KI3|EMC3_MOUSE ER membrane protein complex subunit 3 OS=Mus musculus GN=Emc3 PE=1 SV=3 36 280 9.0E-52
sp|Q5R7C1|EMC3_PONAB ER membrane protein complex subunit 3 OS=Pongo abelii GN=EMC3 PE=2 SV=3 36 280 9.0E-52
sp|Q9P0I2|EMC3_HUMAN ER membrane protein complex subunit 3 OS=Homo sapiens GN=EMC3 PE=1 SV=3 36 280 9.0E-52
sp|B5VLV9|EMC3_YEAS6 ER membrane protein complex subunit 3 OS=Saccharomyces cerevisiae (strain AWRI1631) GN=AIM27 PE=3 SV=2 36 279 2.0E-51
sp|B3LQQ2|EMC3_YEAS1 ER membrane protein complex subunit 3 OS=Saccharomyces cerevisiae (strain RM11-1a) GN=AIM27 PE=3 SV=2 36 279 2.0E-51
sp|P36039|EMC3_YEAST ER membrane protein complex subunit 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=EMC3 PE=1 SV=3 36 279 7.0E-51
sp|A7A082|EMC3_YEAS7 ER membrane protein complex subunit 3 OS=Saccharomyces cerevisiae (strain YJM789) GN=AIM27 PE=3 SV=2 36 279 7.0E-51
sp|Q7SXW4|EMC3_DANRE ER membrane protein complex subunit 3 OS=Danio rerio GN=emc3 PE=2 SV=1 36 280 8.0E-50
sp|Q54YN3|EMC3_DICDI ER membrane protein complex subunit 3 OS=Dictyostelium discoideum GN=emc3 PE=3 SV=1 36 283 2.0E-32
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GO

GO Term Description Terminal node
GO:0016020 membrane Yes
GO:0005575 cellular_component No
GO:0110165 cellular anatomical entity No

SignalP

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SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
Yes 1 - 17 0.5

Transmembrane Domains

Domain # Start End Length
1 39 61 22
2 150 172 22
3 199 221 22

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >OphauG2|1051
MSVLLTSFSLFIVANCAPAQTKLNMAQVLVQTLHRDPQLFYWILMPITVVMVLTGVLRHYASVLMTSAPKRLDTL
AMREQRALARGVALHLNHHVLSSRTFEARRDALTAGFESGAFLKEPERKGQPPANPLTDPSQMDGMMGMMKNNMA
MIIPNTLIMSWINAFFSGYVIMKLPFPITIKFKSMLQAGVQTKDMDPRWMSSISWYFLCIFGLQFVYVFLLGSDN
AASQMAQQMAAQQMPTGPMGGPGQDPDKQFQAEAENLAVVEHYSTLDDVEERLLAGIKL*
Coding >OphauG2|1051
ATGTCGGTTCTGCTGACGAGCTTCTCACTTTTCATTGTCGCCAACTGCGCGCCGGCGCAAACAAAGCTCAACATG
GCCCAGGTTCTAGTTCAGACCCTTCATCGGGATCCGCAGCTCTTCTACTGGATACTTATGCCCATCACTGTCGTC
ATGGTGCTCACCGGTGTTCTGCGACACTATGCCTCGGTCCTCATGACTTCGGCGCCTAAAAGGCTCGATACACTG
GCTATGCGGGAGCAGCGTGCTCTTGCCCGCGGCGTTGCCTTGCATCTCAACCACCACGTACTCTCGTCTCGGACT
TTTGAAGCTCGTCGCGACGCTCTGACAGCTGGATTCGAGAGCGGAGCTTTCCTCAAAGAACCTGAACGTAAGGGA
CAGCCTCCGGCAAATCCACTGACGGACCCAAGTCAGATGGACGGCATGATGGGTATGATGAAGAACAACATGGCC
ATGATCATTCCAAACACACTCATTATGAGCTGGATCAATGCTTTCTTTAGTGGATATGTCATCATGAAACTCCCA
TTTCCAATCACAATAAAGTTCAAGAGCATGCTCCAGGCGGGGGTACAGACAAAAGACATGGATCCGCGGTGGATG
TCGAGCATTAGTTGGTATTTTCTCTGTATTTTCGGGCTACAATTTGTCTACGTCTTCTTGCTTGGAAGCGATAAT
GCCGCGAGCCAAATGGCACAGCAGATGGCAGCTCAGCAGATGCCTACGGGCCCAATGGGTGGCCCAGGACAGGAT
CCGGACAAGCAGTTCCAAGCCGAGGCTGAAAATTTGGCCGTTGTCGAACATTACTCGACACTAGATGATGTAGAA
GAGCGTCTACTCGCGGGTATCAAATTGTAA
Transcript >OphauG2|1051
ATGTCGGTTCTGCTGACGAGCTTCTCACTTTTCATTGTCGCCAACTGCGCGCCGGCGCAAACAAAGCTCAACATG
GCCCAGGTTCTAGTTCAGACCCTTCATCGGGATCCGCAGCTCTTCTACTGGATACTTATGCCCATCACTGTCGTC
ATGGTGCTCACCGGTGTTCTGCGACACTATGCCTCGGTCCTCATGACTTCGGCGCCTAAAAGGCTCGATACACTG
GCTATGCGGGAGCAGCGTGCTCTTGCCCGCGGCGTTGCCTTGCATCTCAACCACCACGTACTCTCGTCTCGGACT
TTTGAAGCTCGTCGCGACGCTCTGACAGCTGGATTCGAGAGCGGAGCTTTCCTCAAAGAACCTGAACGTAAGGGA
CAGCCTCCGGCAAATCCACTGACGGACCCAAGTCAGATGGACGGCATGATGGGTATGATGAAGAACAACATGGCC
ATGATCATTCCAAACACACTCATTATGAGCTGGATCAATGCTTTCTTTAGTGGATATGTCATCATGAAACTCCCA
TTTCCAATCACAATAAAGTTCAAGAGCATGCTCCAGGCGGGGGTACAGACAAAAGACATGGATCCGCGGTGGATG
TCGAGCATTAGTTGGTATTTTCTCTGTATTTTCGGGCTACAATTTGTCTACGTCTTCTTGCTTGGAAGCGATAAT
GCCGCGAGCCAAATGGCACAGCAGATGGCAGCTCAGCAGATGCCTACGGGCCCAATGGGTGGCCCAGGACAGGAT
CCGGACAAGCAGTTCCAAGCCGAGGCTGAAAATTTGGCCGTTGTCGAACATTACTCGACACTAGATGATGTAGAA
GAGCGTCTACTCGCGGGTATCAAATTGTAA
Gene >OphauG2|1051
ATGTCGGTTCTGCTGACGAGCTTCTCACTTTTCATTGTCGCCAACTGCGCGCCGGCGCAAACAAAGCTCAACATG
GCCCAGGTTCTAGTTCAGACCCTTCATCGGGATCCGCAGCTCTTGTGAGCCATTTCACGTCCTCTGGGACTGTTC
ACCAGCCTGGATTCGAATTGCAATGGCTGACTCCAAATCACAGCTACTGGATACTTATGCCCATCACTGTCGTCA
TGGTGCTCACCGGTGTTCTGCGACACTATGCCTCGGTCCTCATGACTTCGGCGCCTAAAAGGCTCGATACACTGG
CTATGCGGGAGCAGCGTGCTCTTGCCCGCGGCGTTGCCTTGCATCTCAACCACCACGTACTCTCGTCTCGGACTT
TTGAAGCTCGTCGCGACGCTCTGACAGCTGGATTCGAGAGCGGAGCTTTCCTCAAAGAACCTGAACGTAAGGGAC
AGCCTCCGGCAAATCCACTGACGGACCCAAGTCAGATGGACGGCATGATGGGTATGATGAAGAACAACATGGCCA
TGATCATTCCAAACACACTCATTATGAGCTGGATCAATGCTTTCTTTAGTGGATATGTCATCAGTACGTCCCAGT
GTTGGAGCATCAGAACCATGATTGGGCTGAGTGACTGACATGCCCAACTTTAGTGAAACTCCCATTTCCAATCAC
AATAAAGTTCAAGAGCATGCTCCAGGCGGGGGTACAGACAAAAGACATGGATCCGCGGTGGATGTCGAGCATTAG
TTGGTATTTTCTCTGTATTTTCGGGCTACAATTTGTCTACGTCTTCTTGCTTGGAAGCGATAATGGTAAGCAGCA
ACCCCTGGGCCCTTTGTTTTCTCCCTGAGGCTTACCCTTTGTTCACAGCCGCGAGCCAAATGGCACAGCAGATGG
CAGCTCAGCAGATGCCTACGGGCCCAATGGGTGGCCCAGGACAGGATCCGGACAAGCAGTTCCAAGCCGAGGCTG
AAAATTTGGCCGTTGTCGAACATTACTCGACACTAGATGATGTAGAAGAGCGTCTACTCGCGGGTATCAAATTGT
AA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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