© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | OphauG2|1050 |
| Gene name | |
| Location | Contig_129:8055..8862 |
| Strand | - |
| Gene length (bp) | 807 |
| Transcript length (bp) | 681 |
| Coding sequence length (bp) | 681 |
| Protein length (aa) | 227 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF06703 | SPC25 | Microsomal signal peptidase 25 kDa subunit (SPC25) | 1.9E-49 | 14 | 166 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q04969|SPC2_YEAST | Signal peptidase complex subunit SPC2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SPC2 PE=1 SV=1 | 1 | 136 | 8.0E-14 |
| sp|Q9UTQ9|SPC2_SCHPO | Signal peptidase complex subunit spc2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=spc2 PE=3 SV=1 | 10 | 170 | 1.0E-09 |
| sp|Q9XWW1|SPCS2_CAEEL | Probable signal peptidase complex subunit 2 OS=Caenorhabditis elegans GN=hpo-21 PE=1 SV=1 | 7 | 157 | 1.0E-06 |
| sp|Q5M8Y1|SPCS2_XENTR | Probable signal peptidase complex subunit 2 OS=Xenopus tropicalis GN=spcs2 PE=2 SV=1 | 4 | 160 | 3.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006465 | signal peptide processing | Yes |
| GO:0016021 | integral component of membrane | Yes |
| GO:0005787 | signal peptidase complex | Yes |
| GO:0005575 | cellular_component | No |
| GO:1905368 | peptidase complex | No |
| GO:0019538 | protein metabolic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0098796 | membrane protein complex | No |
| GO:0008150 | biological_process | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0008152 | metabolic process | No |
| GO:0032991 | protein-containing complex | No |
| GO:0051604 | protein maturation | No |
| GO:0043603 | cellular amide metabolic process | No |
| GO:0009987 | cellular process | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0006518 | peptide metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0006508 | proteolysis | No |
| GO:1902494 | catalytic complex | No |
| GO:0140534 | endoplasmic reticulum protein-containing complex | No |
| GO:1901564 | organonitrogen compound metabolic process | No |
| GO:0016485 | protein processing | No |
| GO:0044237 | cellular metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 33 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 43 | 61 | 18 |
| 2 | 71 | 93 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauG2|1050 MASPDKINPYNLADLKNTSDDTIPNYLNSLKFRQSSYLVDVRLALGYSSIVIAAACGLWDYKFGFESTKLYTAVA VAVYTILDCALIFWLSEVEKGTVYQGYAPSGEQITIASSTKKNDPTYRLAISVKSPGGETSTFNIAKPFAEWFDE TGRFVAPPFQQMLATHVPVIGKSDPRRVKLGVEQILHDNPELLDKVALAAKEQEQNNSVSTAASVKEKKADKRRK A* |
| Coding | >OphauG2|1050 ATGGCTAGCCCTGACAAAATCAACCCCTACAATCTCGCTGACCTCAAAAACACATCCGACGACACCATTCCCAAC TATCTCAATTCCCTAAAATTTCGCCAGTCAAGCTATCTAGTTGACGTTCGTCTTGCTCTGGGGTACTCCTCAATC GTCATTGCCGCTGCCTGCGGTCTCTGGGACTATAAATTCGGCTTCGAGAGCACTAAGCTGTATACCGCCGTCGCG GTCGCCGTATATACCATTCTCGACTGTGCTTTAATATTTTGGCTTTCCGAGGTGGAAAAGGGGACTGTATACCAA GGTTATGCGCCCTCGGGGGAGCAGATTACCATTGCGAGTTCCACAAAGAAGAACGATCCGACCTACCGGCTTGCC ATTTCTGTAAAGTCTCCTGGCGGAGAGACAAGCACTTTCAATATCGCCAAGCCTTTTGCCGAGTGGTTTGACGAG ACGGGTCGCTTTGTGGCTCCCCCATTCCAGCAGATGCTCGCTACTCACGTTCCTGTCATTGGCAAGAGTGACCCT AGACGTGTCAAGCTTGGTGTAGAGCAGATTCTCCACGATAATCCAGAGCTATTGGATAAGGTGGCACTTGCCGCA AAAGAGCAAGAGCAAAACAACAGCGTCTCCACGGCAGCGAGTGTGAAAGAAAAAAAGGCGGACAAGAGACGGAAA GCATAG |
| Transcript | >OphauG2|1050 ATGGCTAGCCCTGACAAAATCAACCCCTACAATCTCGCTGACCTCAAAAACACATCCGACGACACCATTCCCAAC TATCTCAATTCCCTAAAATTTCGCCAGTCAAGCTATCTAGTTGACGTTCGTCTTGCTCTGGGGTACTCCTCAATC GTCATTGCCGCTGCCTGCGGTCTCTGGGACTATAAATTCGGCTTCGAGAGCACTAAGCTGTATACCGCCGTCGCG GTCGCCGTATATACCATTCTCGACTGTGCTTTAATATTTTGGCTTTCCGAGGTGGAAAAGGGGACTGTATACCAA GGTTATGCGCCCTCGGGGGAGCAGATTACCATTGCGAGTTCCACAAAGAAGAACGATCCGACCTACCGGCTTGCC ATTTCTGTAAAGTCTCCTGGCGGAGAGACAAGCACTTTCAATATCGCCAAGCCTTTTGCCGAGTGGTTTGACGAG ACGGGTCGCTTTGTGGCTCCCCCATTCCAGCAGATGCTCGCTACTCACGTTCCTGTCATTGGCAAGAGTGACCCT AGACGTGTCAAGCTTGGTGTAGAGCAGATTCTCCACGATAATCCAGAGCTATTGGATAAGGTGGCACTTGCCGCA AAAGAGCAAGAGCAAAACAACAGCGTCTCCACGGCAGCGAGTGTGAAAGAAAAAAAGGCGGACAAGAGACGGAAA GCATAG |
| Gene | >OphauG2|1050 ATGGCTAGCCCTGACAAAATCAACCCCTACAATCTCGCTGGTACGTAATTGTGCTTGTCGGGAGACAGGTCGCAC AGCTTACACGACAGCTCCGTCCAGACCTCAAAAACACATCCGACGACACCATTCCCAACTATCTCAATTCCCTAA AATTTCGCCAGTCAAGCTATCTAGTTGACGTTCGTCTTGCTCTGGGGTACTCCTCAATCGTCATTGCCGCTGCCT GCGGTCTCTGGGACTATAAATTCGGCTTCGAGAGCACTAAGCTGTATACCGCCGTCGCGGTCGCCGTATATACCA TTCTCGACTGTGCTTTAATATTTTGGCTTTCCGAGGTGGAAAAGGGGACTGTATACCAAGGTTATGCGCCCTCGG GGGAGCAGGTCGGTTCCGCTTCCAGAATCTTACCTCGTTTATGCCATGTATGACTAAAACTCTTGCTGGTTCTAG ATTACCATTGCGAGTTCCACAAAGAAGAACGATCCGACCTACCGGCTTGCCATTTCTGTAAAGTCTCCTGGCGGA GAGACAAGCACTTTCAATATCGCCAAGCCTTTTGCCGAGTGGTTTGACGAGACGGGTCGCTTTGTGGCTCCCCCA TTCCAGCAGATGCTCGCTACTCACGTTCCTGTCATTGGCAAGAGTGACCCTAGACGTGTCAAGCTTGGTGTAGAG CAGATTCTCCACGATAATCCAGAGCTATTGGATAAGGTGGCACTTGCCGCAAAAGAGCAAGAGCAAAACAACAGC GTCTCCACGGCAGCGAGTGTGAAAGAAAAAAAGGCGGACAAGAGACGGAAAGCATAG |