Fungal Genomics

at Utrecht University

PFAM Domain


General information

PFAM domainPF00271
Short nameHelicase_C
Long nameHelicase conserved C-terminal domain
Proteins with at least one of this domain67
Total domain count67
More informationPFAM website

Proteins with this PFAM domain

Note: all PFAM domains are shown for these proteins
Short name Long name E-value Start End Name
protein ID PFAM
OphauG2|1059 PF04851 ResIII Type III restriction enzyme, res subunit 8.1E-14 142 309
PF00270 DEAD DEAD/DEAH box helicase 2.9E-12 152 290
PF00271 Helicase_C Helicase conserved C-terminal domain 1.5E-16 484 596
PF03368 Dicer_dimer Dicer dimerisation domain 4.4E-21 675 761
PF14622 Ribonucleas_3_3 Ribonuclease-III-like 5.2E-09 1070 1211
PF00636 Ribonuclease_3 Ribonuclease III domain 9.6E-21 1103 1209
PF14622 Ribonucleas_3_3 Ribonuclease-III-like 3.5E-16 1275 1429
PF00636 Ribonuclease_3 Ribonuclease III domain 2.6E-21 1296 1415
OphauG2|1227 PF00270 DEAD DEAD/DEAH box helicase 4.1E-10 595 756
PF00271 Helicase_C Helicase conserved C-terminal domain 2.1E-14 838 958
OphauG2|124 PF00270 DEAD DEAD/DEAH box helicase 8.4E-41 101 287
PF00271 Helicase_C Helicase conserved C-terminal domain 1.4E-21 332 446
OphauG2|1377 PF00270 DEAD DEAD/DEAH box helicase 4.4E-41 119 293
PF04851 ResIII Type III restriction enzyme, res subunit 1.1E-05 140 288
PF00271 Helicase_C Helicase conserved C-terminal domain 1.4E-29 341 445
OphauG2|1413 PF00270 DEAD DEAD/DEAH box helicase 1.8E-41 172 372
PF00271 Helicase_C Helicase conserved C-terminal domain 2.3E-18 482 563
PF13959 DUF4217 Domain of unknown function (DUF4217) 2.0E-16 631 690
OphauG2|1471 PF08658 Rad54_N Rad54 N terminal 8.3E-48 28 191
PF04851 ResIII Type III restriction enzyme, res subunit 1.8E-10 213 391
PF00176 SNF2-rel_dom SNF2-related domain 5.1E-63 216 523
PF00271 Helicase_C Helicase conserved C-terminal domain 4.1E-15 564 673
OphauG2|1587 PF00270 DEAD DEAD/DEAH box helicase 1.8E-32 119 283
PF00271 Helicase_C Helicase conserved C-terminal domain 2.9E-23 331 437
OphauG2|16 PF00270 DEAD DEAD/DEAH box helicase 2.1E-34 7 203
PF00271 Helicase_C Helicase conserved C-terminal domain 7.3E-20 249 362
PF13959 DUF4217 Domain of unknown function (DUF4217) 7.2E-20 410 468
OphauG2|1769 PF00176 SNF2-rel_dom SNF2-related domain 1.0E-71 352 664
PF04851 ResIII Type III restriction enzyme, res subunit 3.6E-07 352 531
PF00271 Helicase_C Helicase conserved C-terminal domain 1.1E-14 697 797
OphauG2|1909 PF00270 DEAD DEAD/DEAH box helicase 1.3E-28 13 133
PF00271 Helicase_C Helicase conserved C-terminal domain 3.7E-31 172 278
OphauG2|20 PF00270 DEAD DEAD/DEAH box helicase 3.4E-08 105 254
PF13401 AAA_22 AAA domain 4.7E-06 108 244
PF00271 Helicase_C Helicase conserved C-terminal domain 3.7E-10 293 433
PF04408 HA2 Helicase associated domain (HA2) 2.0E-17 496 584
PF07717 OB_NTP_bind Oligonucleotide/oligosaccharide-binding (OB)-fold 4.3E-22 651 726
OphauG2|2088 PF00270 DEAD DEAD/DEAH box helicase 1.4E-16 28 194
PF00271 Helicase_C Helicase conserved C-terminal domain 1.3E-14 274 366
PF16124 RecQ_Zn_bind RecQ zinc-binding 1.0E-11 379 441
OphauG2|2414 PF04851 ResIII Type III restriction enzyme, res subunit 9.9E-10 181 341
PF00176 SNF2-rel_dom SNF2-related domain 1.0E-81 191 465
PF00271 Helicase_C Helicase conserved C-terminal domain 7.3E-18 488 600
PF09110 HAND HAND 2.4E-33 753 857
PF09111 SLIDE SLIDE 1.5E-31 915 1010
OphauG2|2650 PF00270 DEAD DEAD/DEAH box helicase 1.4E-08 322 487
PF00271 Helicase_C Helicase conserved C-terminal domain 2.2E-11 630 719
PF04408 HA2 Helicase associated domain (HA2) 2.8E-19 781 897
PF07717 OB_NTP_bind Oligonucleotide/oligosaccharide-binding (OB)-fold 4.3E-09 965 1084
OphauG2|2658 PF00270 DEAD DEAD/DEAH box helicase 2.9E-47 205 391
PF00271 Helicase_C Helicase conserved C-terminal domain 3.2E-31 426 535
OphauG2|2716 PF00271 Helicase_C Helicase conserved C-terminal domain 5.6E-08 354 461
PF18147 Suv3_C_1 Suv3 C-terminal domain 1 2.1E-05 560 597
PF12513 SUV3_C Mitochondrial degradasome RNA helicase subunit C terminal 2.6E-12 635 676
OphauG2|2777 PF00270 DEAD DEAD/DEAH box helicase 9.2E-47 189 360
PF00271 Helicase_C Helicase conserved C-terminal domain 2.6E-24 402 507
PF13959 DUF4217 Domain of unknown function (DUF4217) 2.4E-20 549 609
OphauG2|2853 PF04851 ResIII Type III restriction enzyme, res subunit 1.5E-06 933 1107
PF00176 SNF2-rel_dom SNF2-related domain 1.0E-40 937 1234
PF00271 Helicase_C Helicase conserved C-terminal domain 1.9E-22 1289 1396
OphauG2|3050 PF00270 DEAD DEAD/DEAH box helicase 1.5E-11 694 850
PF13401 AAA_22 AAA domain 9.5E-08 701 846
PF00271 Helicase_C Helicase conserved C-terminal domain 8.7E-14 958 1078
PF04408 HA2 Helicase associated domain (HA2) 1.6E-13 1143 1222
PF07717 OB_NTP_bind Oligonucleotide/oligosaccharide-binding (OB)-fold 1.1E-07 1332 1408
OphauG2|3168 PF00271 Helicase_C Helicase conserved C-terminal domain 1.6E-12 241 363
PF04408 HA2 Helicase associated domain (HA2) 6.4E-16 425 516
PF07717 OB_NTP_bind Oligonucleotide/oligosaccharide-binding (OB)-fold 2.4E-14 580 657
OphauG2|3172 PF00270 DEAD DEAD/DEAH box helicase 4.5E-42 53 215
PF00271 Helicase_C Helicase conserved C-terminal domain 1.5E-32 254 362
OphauG2|3424 PF15446 zf-PHD-like PHD/FYVE-zinc-finger like domain 2.7E-66 447 615
PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 4.9E-06 640 670
PF04851 ResIII Type III restriction enzyme, res subunit 2.2E-06 817 983
PF00176 SNF2-rel_dom SNF2-related domain 1.7E-55 833 1106
PF11496 HDA2-3 Class II histone deacetylase complex subunits 2 and 3 2.2E-06 1049 1268
PF00271 Helicase_C Helicase conserved C-terminal domain 2.2E-18 1132 1244
OphauG2|3632 PF00270 DEAD DEAD/DEAH box helicase 4.0E-15 726 887
PF04851 ResIII Type III restriction enzyme, res subunit 3.7E-11 731 886
PF00271 Helicase_C Helicase conserved C-terminal domain 1.6E-06 1230 1307
OphauG2|3676 PF00270 DEAD DEAD/DEAH box helicase 7.9E-46 107 271
PF04851 ResIII Type III restriction enzyme, res subunit 2.8E-06 127 268
PF00271 Helicase_C Helicase conserved C-terminal domain 4.5E-24 358 453
PF08147 DBP10CT DBP10CT (NUC160) domain 7.3E-19 733 800
OphauG2|3730 PF08880 QLQ QLQ 2.4E-10 187 220
PF07529 HSA HSA domain 5.5E-18 422 492
PF04851 ResIII Type III restriction enzyme, res subunit 2.0E-10 589 748
PF00176 SNF2-rel_dom SNF2-related domain 2.1E-78 592 885
PF00271 Helicase_C Helicase conserved C-terminal domain 1.8E-18 909 1022
PF14619 SnAC Snf2-ATP coupling, chromatin remodelling complex 7.6E-16 1129 1186
PF00439 Bromodomain Bromodomain 3.4E-18 1330 1401
OphauG2|3751 PF00270 DEAD DEAD/DEAH box helicase 1.0E-15 172 330
PF04851 ResIII Type III restriction enzyme, res subunit 2.0E-21 172 325
PF00271 Helicase_C Helicase conserved C-terminal domain 8.4E-20 525 633
OphauG2|3754 PF04851 ResIII Type III restriction enzyme, res subunit 9.1E-08 814 986
PF00270 DEAD DEAD/DEAH box helicase 4.1E-21 818 990
PF00271 Helicase_C Helicase conserved C-terminal domain 7.7E-13 1034 1136
PF16124 RecQ_Zn_bind RecQ zinc-binding 4.7E-15 1149 1214
PF09382 RQC RQC domain 4.6E-17 1219 1332
OphauG2|3762 PF00270 DEAD DEAD/DEAH box helicase 7.6E-38 80 248
PF04851 ResIII Type III restriction enzyme, res subunit 3.2E-07 96 244
PF00271 Helicase_C Helicase conserved C-terminal domain 9.1E-25 286 394
OphauG2|3963 PF00270 DEAD DEAD/DEAH box helicase 4.9E-48 597 767
PF00271 Helicase_C Helicase conserved C-terminal domain 5.2E-27 811 918
OphauG2|428 PF00270 DEAD DEAD/DEAH box helicase 4.9E-47 273 443
PF00271 Helicase_C Helicase conserved C-terminal domain 7.2E-28 485 589
OphauG2|4430 PF04851 ResIII Type III restriction enzyme, res subunit 7.7E-23 19 181
PF00270 DEAD DEAD/DEAH box helicase 5.3E-08 23 184
PF00271 Helicase_C Helicase conserved C-terminal domain 1.6E-13 260 358
OphauG2|4496 PF00271 Helicase_C Helicase conserved C-terminal domain 6.6E-21 315 427
OphauG2|4498 PF00270 DEAD DEAD/DEAH box helicase 2.6E-49 177 347
PF04851 ResIII Type III restriction enzyme, res subunit 1.3E-05 197 340
PF00271 Helicase_C Helicase conserved C-terminal domain 3.5E-31 389 495
OphauG2|4698 PF00270 DEAD DEAD/DEAH box helicase 1.7E-16 7 161
PF04851 ResIII Type III restriction enzyme, res subunit 8.2E-11 9 161
PF00271 Helicase_C Helicase conserved C-terminal domain 4.8E-16 348 466
PF03368 Dicer_dimer Dicer dimerisation domain 1.4E-22 535 626
PF14622 Ribonucleas_3_3 Ribonuclease-III-like 1.3E-09 917 1043
PF00636 Ribonuclease_3 Ribonuclease III domain 3.5E-18 921 1031
PF00636 Ribonuclease_3 Ribonuclease III domain 1.6E-15 1110 1253
OphauG2|489 PF00176 SNF2-rel_dom SNF2-related domain 5.7E-52 181 449
PF16203 ERCC3_RAD25_C ERCC3/RAD25/XPB C-terminal helicase 2.2E-07 539 675
PF00271 Helicase_C Helicase conserved C-terminal domain 2.7E-18 546 653
PF14773 VIGSSK Helicase-associated putative binding domain, C-terminal 5.1E-24 788 848
OphauG2|4959 PF04851 ResIII Type III restriction enzyme, res subunit 5.9E-08 140 308
PF00176 SNF2-rel_dom SNF2-related domain 6.5E-70 158 452
PF00271 Helicase_C Helicase conserved C-terminal domain 1.6E-18 591 702
OphauG2|5255 PF00270 DEAD DEAD/DEAH box helicase 5.3E-48 305 502
PF00271 Helicase_C Helicase conserved C-terminal domain 2.2E-27 546 649
OphauG2|5275 PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 1.8E-07 271 328
PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 4.8E-16 369 419
PF00176 SNF2-rel_dom SNF2-related domain 3.2E-60 472 739
PF00271 Helicase_C Helicase conserved C-terminal domain 1.7E-18 767 879
PF13907 DUF4208 Domain of unknown function (DUF4208) 1.8E-18 1527 1623
OphauG2|5321 PF08797 HIRAN HIRAN domain 2.9E-25 166 282
PF00176 SNF2-rel_dom SNF2-related domain 3.6E-69 426 819
PF00271 Helicase_C Helicase conserved C-terminal domain 1.6E-13 982 1085
OphauG2|5423 PF00176 SNF2-rel_dom SNF2-related domain 7.3E-74 169 493
PF13920 zf-C3HC4_3 Zinc finger, C3HC4 type (RING finger) 7.6E-08 533 576
PF13639 zf-RING_2 Ring finger domain 8.2E-08 535 574
PF00097 zf-C3HC4 Zinc finger, C3HC4 type (RING finger) 2.7E-07 536 573
PF13445 zf-RING_UBOX RING-type zinc-finger 9.3E-09 536 567
PF13923 zf-C3HC4_2 Zinc finger, C3HC4 type (RING finger) 1.7E-11 536 573
PF14634 zf-RING_5 zinc-RING finger domain 1.1E-06 536 574
PF00271 Helicase_C Helicase conserved C-terminal domain 5.9E-13 603 716
OphauG2|5437 PF00270 DEAD DEAD/DEAH box helicase 5.1E-26 287 473
PF04851 ResIII Type III restriction enzyme, res subunit 3.9E-08 298 470
PF02889 Sec63 Sec63 Brl domain 8.9E-81 798 1101
PF00270 DEAD DEAD/DEAH box helicase 2.1E-20 1147 1309
PF04851 ResIII Type III restriction enzyme, res subunit 1.4E-09 1158 1308
PF00271 Helicase_C Helicase conserved C-terminal domain 3.0E-06 1423 1510
PF02889 Sec63 Sec63 Brl domain 4.1E-40 1637 1943
OphauG2|5481 PF00270 DEAD DEAD/DEAH box helicase 2.4E-38 66 256
PF00271 Helicase_C Helicase conserved C-terminal domain 1.9E-14 297 368
OphauG2|5500 PF00271 Helicase_C Helicase conserved C-terminal domain 1.0E-09 356 481
PF04408 HA2 Helicase associated domain (HA2) 2.7E-13 543 628
PF07717 OB_NTP_bind Oligonucleotide/oligosaccharide-binding (OB)-fold 1.4E-07 718 778
OphauG2|5955 PF00270 DEAD DEAD/DEAH box helicase 1.6E-31 132 350
PF04851 ResIII Type III restriction enzyme, res subunit 5.5E-06 132 325
PF00271 Helicase_C Helicase conserved C-terminal domain 4.6E-19 420 535
OphauG2|598 PF13625 Helicase_C_3 Helicase conserved C-terminal domain 2.2E-34 101 225
PF04851 ResIII Type III restriction enzyme, res subunit 9.4E-15 338 495
PF16203 ERCC3_RAD25_C ERCC3/RAD25/XPB C-terminal helicase 5.9E-125 521 756
PF00271 Helicase_C Helicase conserved C-terminal domain 5.6E-11 565 671
OphauG2|6087 PF00270 DEAD DEAD/DEAH box helicase 4.6E-45 21 185
PF04851 ResIII Type III restriction enzyme, res subunit 2.1E-06 30 180
PF00271 Helicase_C Helicase conserved C-terminal domain 8.4E-31 222 330
OphauG2|6506 PF00575 S1 S1 RNA binding domain 6.1E-11 236 306
PF00270 DEAD DEAD/DEAH box helicase 8.2E-06 539 689
PF00271 Helicase_C Helicase conserved C-terminal domain 1.8E-13 733 862
PF04408 HA2 Helicase associated domain (HA2) 4.3E-22 924 1012
PF07717 OB_NTP_bind Oligonucleotide/oligosaccharide-binding (OB)-fold 5.7E-22 1070 1145
OphauG2|6519 PF00270 DEAD DEAD/DEAH box helicase 1.4E-42 75 239
PF00271 Helicase_C Helicase conserved C-terminal domain 1.0E-26 276 382
OphauG2|6542 PF04851 ResIII Type III restriction enzyme, res subunit 8.8E-09 905 1065
PF00176 SNF2-rel_dom SNF2-related domain 2.0E-70 924 1204
PF00271 Helicase_C Helicase conserved C-terminal domain 2.9E-18 1467 1579
OphauG2|6679 PF08839 CDT1 DNA replication factor CDT1 like 5.1E-05 18 106
PF04851 ResIII Type III restriction enzyme, res subunit 1.4E-08 318 460
PF00270 DEAD DEAD/DEAH box helicase 1.4E-24 322 496
PF00271 Helicase_C Helicase conserved C-terminal domain 8.9E-10 553 662
PF09369 MZB MrfA Zn-binding domain 5.6E-21 926 1015
OphauG2|6684 PF04851 ResIII Type III restriction enzyme, res subunit 4.7E-07 73 236
PF00270 DEAD DEAD/DEAH box helicase 3.2E-46 74 243
PF00271 Helicase_C Helicase conserved C-terminal domain 3.5E-26 281 390
PF13959 DUF4217 Domain of unknown function (DUF4217) 1.2E-22 432 492
OphauG2|6724 PF00176 SNF2-rel_dom SNF2-related domain 3.5E-52 366 698
PF04851 ResIII Type III restriction enzyme, res subunit 1.0E-07 367 531
PF00097 zf-C3HC4 Zinc finger, C3HC4 type (RING finger) 3.3E-06 712 751
PF00271 Helicase_C Helicase conserved C-terminal domain 9.7E-09 790 886
OphauG2|6797 PF16203 ERCC3_RAD25_C ERCC3/RAD25/XPB C-terminal helicase 2.8E-07 44 156
PF00271 Helicase_C Helicase conserved C-terminal domain 8.3E-16 47 153
OphauG2|6829 PF00176 SNF2-rel_dom SNF2-related domain 1.1E-72 371 738
PF00270 DEAD DEAD/DEAH box helicase 1.2E-05 437 593
PF00271 Helicase_C Helicase conserved C-terminal domain 2.5E-12 914 1016
OphauG2|6896 PF00270 DEAD DEAD/DEAH box helicase 7.7E-06 367 517
PF00271 Helicase_C Helicase conserved C-terminal domain 5.6E-15 566 699
PF04408 HA2 Helicase associated domain (HA2) 6.2E-17 761 836
PF07717 OB_NTP_bind Oligonucleotide/oligosaccharide-binding (OB)-fold 1.8E-13 913 989
OphauG2|6995 PF12054 DUF3535 Domain of unknown function (DUF3535) 2.1E-127 633 1087
PF00176 SNF2-rel_dom SNF2-related domain 8.1E-63 1319 1606
PF00271 Helicase_C Helicase conserved C-terminal domain 6.1E-18 1666 1767
OphauG2|7082 PF17911 Ski2_N Ski2 N-terminal region 8.6E-35 56 200
PF00270 DEAD DEAD/DEAH box helicase 1.8E-17 306 452
PF00271 Helicase_C Helicase conserved C-terminal domain 2.8E-06 650 756
PF13234 rRNA_proc-arch rRNA-processing arch domain 5.6E-23 814 1059
OphauG2|7091 PF00176 SNF2-rel_dom SNF2-related domain 4.3E-70 214 545
PF04851 ResIII Type III restriction enzyme, res subunit 9.7E-06 234 397
PF00270 DEAD DEAD/DEAH box helicase 1.3E-05 244 375
PF00271 Helicase_C Helicase conserved C-terminal domain 9.3E-15 815 925
OphauG2|7162 PF00176 SNF2-rel_dom SNF2-related domain 1.2E-50 478 763
PF00271 Helicase_C Helicase conserved C-terminal domain 3.3E-15 836 948
OphauG2|7190 PF00270 DEAD DEAD/DEAH box helicase 1.5E-44 120 310
PF00271 Helicase_C Helicase conserved C-terminal domain 9.6E-27 347 459
OphauG2|776 PF00270 DEAD DEAD/DEAH box helicase 4.1E-29 175 388
PF00271 Helicase_C Helicase conserved C-terminal domain 2.7E-24 460 559
OphauG2|7769 PF00176 SNF2-rel_dom SNF2-related domain 4.0E-66 346 677
PF04851 ResIII Type III restriction enzyme, res subunit 5.2E-10 376 558
PF00271 Helicase_C Helicase conserved C-terminal domain 1.8E-09 810 921
OphauG2|7792 PF04851 ResIII Type III restriction enzyme, res subunit 6.0E-06 358 541
PF00176 SNF2-rel_dom SNF2-related domain 1.0E-63 371 679
PF00271 Helicase_C Helicase conserved C-terminal domain 2.0E-15 925 1039
OphauG2|7829 PF00270 DEAD DEAD/DEAH box helicase 1.3E-48 211 390
PF00271 Helicase_C Helicase conserved C-terminal domain 5.7E-30 440 550
OphauG2|7861 PF00270 DEAD DEAD/DEAH box helicase 4.8E-07 249 399
PF00271 Helicase_C Helicase conserved C-terminal domain 3.8E-13 445 570
PF04408 HA2 Helicase associated domain (HA2) 5.0E-20 636 719
PF07717 OB_NTP_bind Oligonucleotide/oligosaccharide-binding (OB)-fold 8.3E-20 778 854
OphauG2|7987 PF00270 DEAD DEAD/DEAH box helicase 3.5E-29 264 464
PF04851 ResIII Type III restriction enzyme, res subunit 8.0E-06 264 341
PF00271 Helicase_C Helicase conserved C-terminal domain 1.2E-17 505 622
OphauG2|852 PF00270 DEAD DEAD/DEAH box helicase 9.6E-17 166 312
PF04851 ResIII Type III restriction enzyme, res subunit 8.7E-05 176 311
PF00271 Helicase_C Helicase conserved C-terminal domain 8.1E-06 487 563
PF13234 rRNA_proc-arch rRNA-processing arch domain 7.4E-89 617 894
PF08148 DSHCT DSHCT (NUC185) domain 1.6E-45 922 1091

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