Fungal Genomics

at Utrecht University

PFAM Domain


General information

PFAM domainPF00004
Short nameAAA
Long nameATPase family associated with various cellular activities (AAA)
Proteins with at least one of this domain43
Total domain count52
More informationPFAM website

Proteins with this PFAM domain

Note: all PFAM domains are shown for these proteins
Short name Long name E-value Start End Name
protein ID PFAM
OphauG2|1125 PF00004 AAA ATPase family associated with various cellular activities (AAA) 5.8E-40 219 350
PF17862 AAA_lid_3 AAA+ lid domain 1.5E-07 374 415
OphauG2|1622 PF00004 AAA ATPase family associated with various cellular activities (AAA) 2.6E-13 198 326
PF00004 AAA ATPase family associated with various cellular activities (AAA) 6.2E-43 482 610
OphauG2|2019 PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.2E-15 826 941
OphauG2|2391 PF02190 LON_substr_bdg ATP-dependent protease La (LON) substrate-binding domain 1.2E-25 8 257
PF00004 AAA ATPase family associated with various cellular activities (AAA) 6.9E-23 479 617
PF07728 AAA_5 AAA domain (dynein-related subfamily) 4.1E-08 479 614
PF05362 Lon_C Lon protease (S16) C-terminal proteolytic domain 1.6E-68 705 908
OphauG2|2440 PF07724 AAA_2 AAA domain (Cdc48 subfamily) 3.0E-33 200 432
PF07728 AAA_5 AAA domain (dynein-related subfamily) 1.6E-05 202 278
PF00004 AAA ATPase family associated with various cellular activities (AAA) 3.3E-12 203 307
PF10431 ClpB_D2-small C-terminal, D2-small domain, of ClpB protein 5.6E-08 439 509
OphauG2|250 PF13191 AAA_16 AAA ATPase domain 2.4E-11 159 240
PF13401 AAA_22 AAA domain 3.1E-11 183 306
PF00004 AAA ATPase family associated with various cellular activities (AAA) 2.0E-09 186 316
PF17872 AAA_lid_10 AAA lid domain 2.1E-07 346 402
OphauG2|3395 PF00004 AAA ATPase family associated with various cellular activities (AAA) 9.3E-06 725 837
PF00004 AAA ATPase family associated with various cellular activities (AAA) 6.3E-15 993 1040
OphauG2|3608 PF05496 RuvB_N Holliday junction DNA helicase RuvB P-loop domain 1.1E-08 226 346
PF00004 AAA ATPase family associated with various cellular activities (AAA) 4.4E-11 258 365
PF16193 AAA_assoc_2 AAA C-terminal domain 2.6E-20 398 468
PF12002 MgsA_C MgsA AAA+ ATPase C terminal 8.1E-58 469 628
OphauG2|4140 PF00004 AAA ATPase family associated with various cellular activities (AAA) 3.1E-37 746 872
PF17862 AAA_lid_3 AAA+ lid domain 1.9E-08 895 930
OphauG2|4225 PF03215 Rad17 Rad17 P-loop domain 3.7E-10 28 92
PF13177 DNA_pol3_delta2 DNA polymerase III, delta subunit 1.2E-09 49 199
PF00004 AAA ATPase family associated with various cellular activities (AAA) 6.1E-16 68 195
PF08542 Rep_fac_C Replication factor C C-terminal domain 1.6E-21 282 367
OphauG2|4268 PF08740 BCS1_N BCS1 N terminal 2.6E-52 63 261
PF00004 AAA ATPase family associated with various cellular activities (AAA) 6.9E-08 299 363
PF00004 AAA ATPase family associated with various cellular activities (AAA) 5.4E-06 400 448
OphauG2|4326 PF16450 Prot_ATP_ID_OB Proteasomal ATPase OB C-terminal domain 5.3E-16 98 174
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.9E-39 233 365
PF17862 AAA_lid_3 AAA+ lid domain 4.7E-07 388 428
OphauG2|4352 PF00533 BRCT BRCA1 C Terminus (BRCT) domain 1.6E-13 312 387
PF00004 AAA ATPase family associated with various cellular activities (AAA) 8.8E-08 507 604
PF08519 RFC1 Replication factor RFC1 C terminal domain 1.7E-55 785 936
OphauG2|4354 PF13177 DNA_pol3_delta2 DNA polymerase III, delta subunit 5.5E-11 20 185
PF00004 AAA ATPase family associated with various cellular activities (AAA) 3.9E-06 38 179
OphauG2|4391 PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.2E-42 617 752
PF17862 AAA_lid_3 AAA+ lid domain 2.0E-07 778 810
PF00004 AAA ATPase family associated with various cellular activities (AAA) 3.6E-05 919 1020
OphauG2|44 PF03215 Rad17 Rad17 P-loop domain 1.5E-08 41 175
PF13177 DNA_pol3_delta2 DNA polymerase III, delta subunit 2.8E-11 59 207
PF07728 AAA_5 AAA domain (dynein-related subfamily) 4.9E-05 77 178
PF00004 AAA ATPase family associated with various cellular activities (AAA) 4.0E-17 78 205
PF13604 AAA_30 AAA domain 3.1E-06 78 177
PF08542 Rep_fac_C Replication factor C C-terminal domain 7.8E-14 290 375
OphauG2|4527 PF04212 MIT MIT (microtubule interacting and transport) domain 2.4E-15 7 71
PF05496 RuvB_N Holliday junction DNA helicase RuvB P-loop domain 6.6E-07 157 254
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.7E-41 164 292
PF17862 AAA_lid_3 AAA+ lid domain 8.8E-07 318 351
PF09336 Vps4_C Vps4 C terminal oligomerisation domain 1.1E-24 366 426
OphauG2|4931 PF07728 AAA_5 AAA domain (dynein-related subfamily) 1.6E-19 303 422
PF17867 AAA_lid_7 Midasin AAA lid domain 3.4E-21 453 568
PF07728 AAA_5 AAA domain (dynein-related subfamily) 1.8E-05 636 682
PF07728 AAA_5 AAA domain (dynein-related subfamily) 4.0E-06 804 892
PF17865 AAA_lid_5 Midasin AAA lid domain 1.7E-31 906 1009
PF07728 AAA_5 AAA domain (dynein-related subfamily) 7.0E-21 1083 1218
PF17867 AAA_lid_7 Midasin AAA lid domain 4.4E-11 1230 1324
PF07728 AAA_5 AAA domain (dynein-related subfamily) 1.6E-07 1374 1419
PF07728 AAA_5 AAA domain (dynein-related subfamily) 1.1E-14 1485 1573
PF00004 AAA ATPase family associated with various cellular activities (AAA) 9.2E-05 1757 1791
PF07726 AAA_3 ATPase family associated with various cellular activities (AAA) 8.2E-10 1757 1896
PF07728 AAA_5 AAA domain (dynein-related subfamily) 5.7E-18 1757 1895
PF17867 AAA_lid_7 Midasin AAA lid domain 1.1E-11 1907 2005
PF07728 AAA_5 AAA domain (dynein-related subfamily) 9.5E-08 2193 2286
OphauG2|5132 PF16450 Prot_ATP_ID_OB Proteasomal ATPase OB C-terminal domain 1.5E-06 56 104
PF07728 AAA_5 AAA domain (dynein-related subfamily) 1.1E-06 168 289
PF00004 AAA ATPase family associated with various cellular activities (AAA) 2.6E-43 169 301
PF07724 AAA_2 AAA domain (Cdc48 subfamily) 1.2E-06 169 262
PF17862 AAA_lid_3 AAA+ lid domain 1.6E-13 325 367
OphauG2|5161 PF00004 AAA ATPase family associated with various cellular activities (AAA) 7.3E-08 13 99
OphauG2|5466 PF06068 TIP49 TIP49 P-loop domain 4.5E-167 15 369
PF05496 RuvB_N Holliday junction DNA helicase RuvB P-loop domain 1.1E-06 39 92
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.3E-06 67 117
PF17856 TIP49_C TIP49 AAA-lid domain 5.8E-23 375 440
OphauG2|5800 PF00004 AAA ATPase family associated with various cellular activities (AAA) 3.7E-10 126 256
PF17871 AAA_lid_9 AAA lid domain 4.7E-35 264 366
PF07724 AAA_2 AAA domain (Cdc48 subfamily) 3.7E-42 518 690
PF07728 AAA_5 AAA domain (dynein-related subfamily) 5.8E-08 523 641
PF00004 AAA ATPase family associated with various cellular activities (AAA) 2.7E-05 525 619
PF10431 ClpB_D2-small C-terminal, D2-small domain, of ClpB protein 9.3E-24 697 777
OphauG2|5803 PF03215 Rad17 Rad17 P-loop domain 2.9E-05 36 70
PF13671 AAA_33 AAA domain 1.0E-12 43 166
PF00004 AAA ATPase family associated with various cellular activities (AAA) 3.7E-05 44 79
PF13238 AAA_18 AAA domain 1.7E-08 44 165
PF01202 SKI Shikimate kinase 1.8E-12 50 205
OphauG2|5810 PF00004 AAA ATPase family associated with various cellular activities (AAA) 4.5E-20 508 627
OphauG2|5818 PF16450 Prot_ATP_ID_OB Proteasomal ATPase OB C-terminal domain 7.9E-12 59 114
PF07728 AAA_5 AAA domain (dynein-related subfamily) 4.2E-05 171 292
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.3E-42 172 305
PF17862 AAA_lid_3 AAA+ lid domain 1.4E-09 327 370
OphauG2|5836 PF02190 LON_substr_bdg ATP-dependent protease La (LON) substrate-binding domain 3.6E-30 190 464
PF00004 AAA ATPase family associated with various cellular activities (AAA) 7.2E-21 615 752
PF07728 AAA_5 AAA domain (dynein-related subfamily) 2.9E-06 615 739
PF05362 Lon_C Lon protease (S16) C-terminal proteolytic domain 1.0E-64 896 1101
PF13541 ChlI Subunit ChlI of Mg-chelatase 3.5E-06 953 1071
OphauG2|6115 PF09262 PEX-1N Peroxisome biogenesis factor 1, N-terminal 1.3E-27 129 221
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.0E-06 544 672
PF00004 AAA ATPase family associated with various cellular activities (AAA) 5.0E-43 850 976
PF17862 AAA_lid_3 AAA+ lid domain 2.4E-10 1010 1044
OphauG2|668 PF02359 CDC48_N Cell division protein 48 (CDC48), N-terminal domain 1.0E-17 41 122
PF02933 CDC48_2 Cell division protein 48 (CDC48), domain 2 3.4E-07 142 204
PF07728 AAA_5 AAA domain (dynein-related subfamily) 3.8E-06 256 375
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.2E-47 257 386
PF07724 AAA_2 AAA domain (Cdc48 subfamily) 2.3E-07 257 354
PF17862 AAA_lid_3 AAA+ lid domain 2.6E-13 409 448
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.7E-47 531 664
PF17862 AAA_lid_3 AAA+ lid domain 2.3E-09 686 722
PF09336 Vps4_C Vps4 C terminal oligomerisation domain 1.3E-04 739 783
OphauG2|6779 PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.4E-07 39 102
PF17872 AAA_lid_10 AAA lid domain 2.5E-11 132 168
OphauG2|6883 PF00004 AAA ATPase family associated with various cellular activities (AAA) 3.8E-14 221 338
PF17871 AAA_lid_9 AAA lid domain 3.0E-31 362 462
PF00158 Sigma54_activat Sigma-54 interaction domain 3.2E-05 627 738
PF07724 AAA_2 AAA domain (Cdc48 subfamily) 2.8E-44 630 791
PF07728 AAA_5 AAA domain (dynein-related subfamily) 5.0E-09 631 750
PF00004 AAA ATPase family associated with various cellular activities (AAA) 9.6E-09 632 753
PF10431 ClpB_D2-small C-terminal, D2-small domain, of ClpB protein 9.7E-25 798 880
OphauG2|6951 PF06068 TIP49 TIP49 P-loop domain 1.5E-154 34 375
PF03796 DnaB_C DnaB-like helicase C terminal domain 2.2E-06 79 194
PF00004 AAA ATPase family associated with various cellular activities (AAA) 4.9E-05 86 137
PF17856 TIP49_C TIP49 AAA-lid domain 9.4E-21 382 447
OphauG2|705 PF06480 FtsH_ext FtsH Extracellular 7.3E-06 237 335
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.6E-40 440 574
PF17862 AAA_lid_3 AAA+ lid domain 1.9E-12 603 641
PF01434 Peptidase_M41 Peptidase family M41 8.3E-67 657 836
OphauG2|7085 PF00004 AAA ATPase family associated with various cellular activities (AAA) 4.3E-09 527 692
OphauG2|7381 PF00004 AAA ATPase family associated with various cellular activities (AAA) 7.9E-05 3 52
PF17862 AAA_lid_3 AAA+ lid domain 7.1E-10 76 112
OphauG2|7583 PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.6E-04 7 37
PF13238 AAA_18 AAA domain 7.4E-28 7 126
PF13207 AAA_17 AAA domain 1.1E-06 10 82
OphauG2|7604 PF13173 AAA_14 AAA domain 9.3E-07 105 208
PF00004 AAA ATPase family associated with various cellular activities (AAA) 5.8E-11 106 223
PF01443 Viral_helicase1 Viral (Superfamily 1) RNA helicase 1.9E-04 107 186
PF13177 DNA_pol3_delta2 DNA polymerase III, delta subunit 1.9E-06 146 227
PF08542 Rep_fac_C Replication factor C C-terminal domain 2.2E-19 292 378
OphauG2|7661 PF13401 AAA_22 AAA domain 2.1E-06 274 378
PF00004 AAA ATPase family associated with various cellular activities (AAA) 4.2E-12 278 379
PF07728 AAA_5 AAA domain (dynein-related subfamily) 7.4E-05 278 353
OphauG2|7782 PF07728 AAA_5 AAA domain (dynein-related subfamily) 1.4E-06 285 355
PF00004 AAA ATPase family associated with various cellular activities (AAA) 4.2E-42 286 415
PF17862 AAA_lid_3 AAA+ lid domain 2.2E-09 438 481
PF01434 Peptidase_M41 Peptidase family M41 7.7E-52 497 674
OphauG2|7928 PF00004 AAA ATPase family associated with various cellular activities (AAA) 5.2E-12 252 375
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.7E-38 512 645
PF17862 AAA_lid_3 AAA+ lid domain 9.1E-07 668 724
OphauG2|821 PF00004 AAA ATPase family associated with various cellular activities (AAA) 3.3E-15 421 535
OphauG2|860 PF16450 Prot_ATP_ID_OB Proteasomal ATPase OB C-terminal domain 1.4E-10 89 144
PF05673 DUF815 Protein of unknown function (DUF815) 4.6E-06 162 267
PF07728 AAA_5 AAA domain (dynein-related subfamily) 3.0E-08 201 323
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.5E-44 202 334
PF07724 AAA_2 AAA domain (Cdc48 subfamily) 1.5E-07 202 295
OphauG2|923 PF00004 AAA ATPase family associated with various cellular activities (AAA) 2.4E-37 551 696
PF17862 AAA_lid_3 AAA+ lid domain 8.5E-07 721 764
PF09336 Vps4_C Vps4 C terminal oligomerisation domain 3.6E-08 765 799
OphauG2|926 PF16450 Prot_ATP_ID_OB Proteasomal ATPase OB C-terminal domain 1.5E-13 128 182
PF05673 DUF815 Protein of unknown function (DUF815) 1.3E-05 236 306
PF00004 AAA ATPase family associated with various cellular activities (AAA) 9.3E-41 241 373
PF17862 AAA_lid_3 AAA+ lid domain 1.9E-10 396 440

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