Fungal Genomics

at Utrecht University

General Properties

Protein IDOphauB2|946
Gene name
LocationContig_12:263593..265371
Strand-
Gene length (bp)1778
Transcript length (bp)1419
Coding sequence length (bp)1419
Protein length (aa) 473

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00432 Prenyltrans Prenyltransferase and squalene oxidase repeat 2.3E-04 140 171
PF00432 Prenyltrans Prenyltransferase and squalene oxidase repeat 7.4E-04 186 221
PF00432 Prenyltrans Prenyltransferase and squalene oxidase repeat 2.1E-07 245 283
PF00432 Prenyltrans Prenyltransferase and squalene oxidase repeat 4.3E-07 294 336
PF00432 Prenyltrans Prenyltransferase and squalene oxidase repeat 8.6E-06 363 404

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|O13782|FNTB_SCHPO Protein farnesyltransferase subunit beta OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cpp1 PE=1 SV=1 46 469 3.0E-80
sp|P49356|FNTB_HUMAN Protein farnesyltransferase subunit beta OS=Homo sapiens GN=FNTB PE=1 SV=1 78 469 3.0E-76
sp|Q02293|FNTB_RAT Protein farnesyltransferase subunit beta OS=Rattus norvegicus GN=Fntb PE=1 SV=1 78 469 1.0E-75
sp|Q8K2I1|FNTB_MOUSE Protein farnesyltransferase subunit beta OS=Mus musculus GN=Fntb PE=1 SV=1 78 469 4.0E-75
sp|P49355|FNTB_BOVIN Protein farnesyltransferase subunit beta OS=Bos taurus GN=FNTB PE=2 SV=1 78 469 3.0E-74
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Swissprot ID Swissprot Description Start End E-value
sp|O13782|FNTB_SCHPO Protein farnesyltransferase subunit beta OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cpp1 PE=1 SV=1 46 469 3.0E-80
sp|P49356|FNTB_HUMAN Protein farnesyltransferase subunit beta OS=Homo sapiens GN=FNTB PE=1 SV=1 78 469 3.0E-76
sp|Q02293|FNTB_RAT Protein farnesyltransferase subunit beta OS=Rattus norvegicus GN=Fntb PE=1 SV=1 78 469 1.0E-75
sp|Q8K2I1|FNTB_MOUSE Protein farnesyltransferase subunit beta OS=Mus musculus GN=Fntb PE=1 SV=1 78 469 4.0E-75
sp|P49355|FNTB_BOVIN Protein farnesyltransferase subunit beta OS=Bos taurus GN=FNTB PE=2 SV=1 78 469 3.0E-74
sp|Q04903|FNTB_PEA Protein farnesyltransferase subunit beta OS=Pisum sativum GN=FTB PE=1 SV=1 84 466 4.0E-65
sp|P22007|FNTB_YEAST Protein farnesyltransferase subunit beta OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RAM1 PE=1 SV=2 38 469 2.0E-64
sp|Q55D51|FNTB_DICDI Protein farnesyltransferase subunit beta OS=Dictyostelium discoideum GN=fntB PE=3 SV=1 32 409 4.0E-56
sp|Q38920|FNTB_ARATH Protein farnesyltransferase subunit beta OS=Arabidopsis thaliana GN=FTB PE=1 SV=3 83 410 2.0E-55
sp|O93830|PGTB2_CANAX Geranylgeranyl transferase type-2 subunit beta OS=Candida albicans GN=BET2 PE=3 SV=1 112 409 9.0E-32
sp|Q5E9B3|PGTB2_BOVIN Geranylgeranyl transferase type-2 subunit beta OS=Bos taurus GN=RABGGTB PE=2 SV=1 112 404 2.0E-30
sp|P53611|PGTB2_HUMAN Geranylgeranyl transferase type-2 subunit beta OS=Homo sapiens GN=RABGGTB PE=1 SV=2 112 461 3.0E-30
sp|P53612|PGTB2_MOUSE Geranylgeranyl transferase type-2 subunit beta OS=Mus musculus GN=Rabggtb PE=1 SV=2 112 404 2.0E-29
sp|Q08603|PGTB2_RAT Geranylgeranyl transferase type-2 subunit beta OS=Rattus norvegicus GN=Rabggtb PE=1 SV=1 112 404 7.0E-29
sp|O80642|PGTB1_ARATH Geranylgeranyl transferase type-1 subunit beta OS=Arabidopsis thaliana GN=GGB PE=1 SV=1 83 404 1.0E-28
sp|P46960|PGTB2_SCHPO Geranylgeranyl transferase type-2 subunit beta OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ptb1 PE=3 SV=1 81 407 2.0E-27
sp|B0G172|PGTB2_DICDI Probable geranylgeranyl transferase type-2 subunit beta OS=Dictyostelium discoideum GN=rabggtb PE=3 SV=1 80 404 2.0E-27
sp|P41992|GGTB2_CAEEL Probable geranylgeranyl transferase type-2 subunit beta OS=Caenorhabditis elegans GN=ggtb-1 PE=3 SV=2 76 404 6.0E-27
sp|Q5EAD5|PGTB1_BOVIN Geranylgeranyl transferase type-1 subunit beta OS=Bos taurus GN=PGGT1B PE=2 SV=1 81 404 2.0E-23
sp|P53610|PGTB1_RAT Geranylgeranyl transferase type-1 subunit beta OS=Rattus norvegicus GN=Pggt1b PE=1 SV=1 63 404 3.0E-23
sp|P20133|PGTB2_YEAST Geranylgeranyl transferase type-2 subunit beta OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BET2 PE=1 SV=3 112 465 3.0E-23
sp|P53609|PGTB1_HUMAN Geranylgeranyl transferase type-1 subunit beta OS=Homo sapiens GN=PGGT1B PE=1 SV=2 63 404 4.0E-23
sp|Q8BUY9|PGTB1_MOUSE Geranylgeranyl transferase type-1 subunit beta OS=Mus musculus GN=Pggt1b PE=1 SV=1 63 404 5.0E-23
sp|P32434|PGTB1_SCHPO Geranylgeranyl transferase type-1 subunit beta OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cwg2 PE=3 SV=1 80 421 6.0E-18
sp|Q55DA3|PGTB1_DICDI Geranylgeranyl transferase type-1 subunit beta OS=Dictyostelium discoideum GN=pggt1b PE=2 SV=1 83 404 1.0E-10
sp|P18898|PGTB1_YEAST Geranylgeranyl transferase type-1 subunit beta OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CDC43 PE=1 SV=2 75 411 1.0E-08
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GO

GO Term Description Terminal node
GO:0003824 catalytic activity Yes
GO:0003674 molecular_function No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 19 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >OphauB2|946
MAAAIDQPSCAASNGLEARTTSQAAATGSAWDLFSSRQLIRDALETESSKVQEQTVDACLPLLAGRQEGQGAVNA
QGVPHLFRDRHIKFLHKHLGPLPPQFMSADPSKPWILYWCLNALSLLGQDVAVYRSRVVETVRPMQNKSGGFAGG
FGQTSHLATTYAVVLSLCLVGGPDAYQVIERRSMWKWLCSLKQADGGFQMAVGGEEDVRGAYCAAVIISLLNIPL
DLSAQSPARAADHTHLLSGLGDWVRQCQTFEGGVSAKPGVEAHGAYAFCALGCLSILDSPHRSVAKYLDVARLVS
WLSARQYAPEGGFSGRTNKLVDGCYSHWVGGCWPIIQASLDGPQEAAMPDDPPMQAHDNLFSRNALIRYILCCGQ
DLSKRGGMRDKPGKHSDAYHTCYVLAGLSSAQHKWSLMRPRVDAALMYGDVWAVSPWGPDEQIFDQEDRLCPMNP
VYAIPHDRVQQCQEYFVSKTGF*
Coding >OphauB2|946
ATGGCGGCGGCCATAGACCAGCCGTCGTGCGCGGCCAGCAACGGGCTCGAGGCCCGTACAACATCACAGGCAGCA
GCAACGGGCTCGGCCTGGGACCTCTTCTCGTCAAGGCAGCTCATTCGCGATGCGCTGGAGACGGAGAGCTCCAAG
GTGCAGGAGCAGACAGTGGACGCGTGCCTACCTTTGCTCGCGGGCCGTCAAGAGGGCCAGGGCGCCGTCAACGCG
CAGGGCGTGCCACATTTGTTCCGCGACCGGCACATCAAGTTCTTACACAAGCATCTTGGCCCGCTGCCGCCCCAG
TTCATGTCTGCAGACCCTAGCAAGCCCTGGATCCTGTATTGGTGTCTCAATGCCTTGTCGCTTCTCGGTCAGGAT
GTCGCCGTCTATCGCTCGCGAGTGGTGGAGACGGTTCGCCCCATGCAGAACAAGAGCGGAGGATTCGCCGGCGGC
TTCGGCCAGACGTCGCACTTGGCCACTACGTACGCGGTGGTGCTCTCGCTCTGCTTAGTGGGCGGCCCAGACGCT
TACCAAGTAATTGAGCGGAGGAGCATGTGGAAATGGCTGTGCTCGCTCAAACAAGCCGACGGCGGCTTCCAGATG
GCCGTCGGAGGCGAGGAGGACGTAAGAGGAGCCTACTGCGCGGCTGTCATCATTTCGCTACTCAACATACCGCTC
GACCTATCAGCCCAGTCTCCTGCACGCGCAGCAGACCACACGCACCTCTTGAGCGGCCTGGGTGACTGGGTCCGG
CAATGCCAGACCTTCGAGGGGGGAGTGTCGGCAAAGCCGGGTGTCGAGGCCCATGGGGCGTACGCCTTTTGTGCC
CTGGGATGCCTCTCCATCCTGGATTCCCCGCATCGCAGCGTGGCCAAATATCTCGATGTTGCGCGACTTGTTTCC
TGGCTCTCCGCTCGCCAGTACGCACCCGAGGGTGGCTTCTCTGGTCGCACCAACAAGCTGGTTGATGGCTGCTAT
AGTCACTGGGTAGGCGGATGCTGGCCCATCATCCAGGCCAGCCTCGACGGGCCACAAGAGGCCGCCATGCCAGAC
GACCCGCCCATGCAAGCTCACGACAATCTTTTCAGCCGAAACGCGCTAATCCGGTATATTCTTTGCTGTGGCCAA
GATCTGTCCAAGCGTGGCGGTATGAGAGACAAACCAGGCAAGCATTCCGACGCCTATCATACATGCTACGTGCTT
GCGGGCCTGAGCTCGGCCCAGCACAAGTGGTCCCTGATGCGGCCTCGTGTTGATGCGGCCTTGATGTACGGCGAT
GTGTGGGCCGTGTCACCATGGGGCCCAGACGAGCAAATTTTTGACCAAGAGGATCGGCTATGCCCAATGAACCCA
GTATACGCCATCCCTCATGACAGGGTCCAGCAGTGTCAAGAGTACTTTGTCTCCAAGACAGGATTCTAG
Transcript >OphauB2|946
ATGGCGGCGGCCATAGACCAGCCGTCGTGCGCGGCCAGCAACGGGCTCGAGGCCCGTACAACATCACAGGCAGCA
GCAACGGGCTCGGCCTGGGACCTCTTCTCGTCAAGGCAGCTCATTCGCGATGCGCTGGAGACGGAGAGCTCCAAG
GTGCAGGAGCAGACAGTGGACGCGTGCCTACCTTTGCTCGCGGGCCGTCAAGAGGGCCAGGGCGCCGTCAACGCG
CAGGGCGTGCCACATTTGTTCCGCGACCGGCACATCAAGTTCTTACACAAGCATCTTGGCCCGCTGCCGCCCCAG
TTCATGTCTGCAGACCCTAGCAAGCCCTGGATCCTGTATTGGTGTCTCAATGCCTTGTCGCTTCTCGGTCAGGAT
GTCGCCGTCTATCGCTCGCGAGTGGTGGAGACGGTTCGCCCCATGCAGAACAAGAGCGGAGGATTCGCCGGCGGC
TTCGGCCAGACGTCGCACTTGGCCACTACGTACGCGGTGGTGCTCTCGCTCTGCTTAGTGGGCGGCCCAGACGCT
TACCAAGTAATTGAGCGGAGGAGCATGTGGAAATGGCTGTGCTCGCTCAAACAAGCCGACGGCGGCTTCCAGATG
GCCGTCGGAGGCGAGGAGGACGTAAGAGGAGCCTACTGCGCGGCTGTCATCATTTCGCTACTCAACATACCGCTC
GACCTATCAGCCCAGTCTCCTGCACGCGCAGCAGACCACACGCACCTCTTGAGCGGCCTGGGTGACTGGGTCCGG
CAATGCCAGACCTTCGAGGGGGGAGTGTCGGCAAAGCCGGGTGTCGAGGCCCATGGGGCGTACGCCTTTTGTGCC
CTGGGATGCCTCTCCATCCTGGATTCCCCGCATCGCAGCGTGGCCAAATATCTCGATGTTGCGCGACTTGTTTCC
TGGCTCTCCGCTCGCCAGTACGCACCCGAGGGTGGCTTCTCTGGTCGCACCAACAAGCTGGTTGATGGCTGCTAT
AGTCACTGGGTAGGCGGATGCTGGCCCATCATCCAGGCCAGCCTCGACGGGCCACAAGAGGCCGCCATGCCAGAC
GACCCGCCCATGCAAGCTCACGACAATCTTTTCAGCCGAAACGCGCTAATCCGGTATATTCTTTGCTGTGGCCAA
GATCTGTCCAAGCGTGGCGGTATGAGAGACAAACCAGGCAAGCATTCCGACGCCTATCATACATGCTACGTGCTT
GCGGGCCTGAGCTCGGCCCAGCACAAGTGGTCCCTGATGCGGCCTCGTGTTGATGCGGCCTTGATGTACGGCGAT
GTGTGGGCCGTGTCACCATGGGGCCCAGACGAGCAAATTTTTGACCAAGAGGATCGGCTATGCCCAATGAACCCA
GTATACGCCATCCCTCATGACAGGGTCCAGCAGTGTCAAGAGTACTTTGTCTCCAAGACAGGATTCTAG
Gene >OphauB2|946
ATGGCGGCGGCCATAGACCAGCCGTCGTGCGCGGCCAGCAACGGGCTCGAGGCCCGTACAACATCACAGGCAGCA
GCAACGGGCTCGGCCTGGGACCTCTTCTCGTCAAGGCAGCTCATTCGCGATGCGCTGGAGACGGAGAGCTCCAAG
GTGCAGGAGCAGACAGTGGACGCGTGCCTACCTTTGCTCGCGGGCCGTCAAGAGGGCCAGGGCGCCGTCAACGCG
CAGGGCGTGCCACATTTGTTCCGCGACCGGCACATCAAGTTCTTACACAAGCATCTTGGCCCGCTGCCGCCCCAG
TTCATGTCTGCAGACCCTAGCAAGCCCTGGATCCTGTATTGGTGTCTCAATGCCTTGTCGCTTCTCGGTCAGGAT
GTCGCCGTCTATCGCTCGCGAGTGGTGGAGACGGTTCGCCCCATGCAGAACAAGAGCGGAGGATTCGCCGGCGGC
TTCGGCCAGACGTCGCACTTGGCCACTACGTACGCGGTGGTGCTCTCGCTCTGCTTAGTGGGCGGCCCAGACGCT
TACCAAGTAATTGAGCGGAGGAGCATGTGGAAATGGCTGTGCTCGCTCAAACAAGCCGACGGCGGCTTCCAGATG
GCCGTCGGAGGCGAGGAGGACGTAAGGTGGGTTTGCCTGCCCCAGATAGGGCAAGACGTCTCAACAAAAGAGCGG
CAGTCTGACAAGATGGCTCTTTCAGAGGAGCCTACTGCGCGGCTGTCATCATTTCGCTACTCAACATACCGCTCG
ACCTATCAGCCCAGTCTCCTGCACGCGCAGCAGACCACACGCACCTCTTGAGCGGCCTGGGTGACTGGGTCCGGC
AATGTACGTTTCTCCCCACCCGCCCCGAGGCGCGATGAGGGGGCATGGGCACATTGTGCCTTGTCCTCGTTGGCT
CTCTCTCTGATTGTTGTCCCATGCAGGCCAGACCTTCGAGGGGGGAGTGTCGGCAAAGCCGGGTGTCGAGGCCCA
TGGGGCGTACGCCTTTTGTGCCCTGGGATGCCTCTCCATCCTGGATTCCCCGCATCGCAGCGTGGCCAAGTGAGT
CGTCGCCTCGAAGCCTCGAGAGCAGCAGAGGGGAGACAAGGGGTGTATGAGTGAAGGGATACGAATGTGTGTGTG
CTCATGTAGCTGCATGTCGCTGACCAGTGAGCTCCTTGCTTCTCCGGACAGATATCTCGATGTTGCGCGACTTGT
TTCCTGGCTCTCCGCTCGCCAGTACGCACCCGAGGGTGGCTTCTCTGGTCGCACCAACAAGCTGGTTGATGGCTG
CTATAGTCACTGGGTAGGCGGATGCTGGCCCATCATCCAGGCCAGCCTCGACGGGCCACAAGAGGCCGCCATGCC
AGACGACCCGCCCATGCAAGCTCACGACAATCTTTTCAGCCGAAACGCGCTAATCCGGTATATTCTTTGCTGTGG
CCAAGATCTGTCCAAGCGTGGCGGTATGAGAGACAAACCAGGCAAGTGAGTCGATGCAACGGCTGCCCTACCTCT
TTGACTTGGCACTCATGGTCCCCAGGCATTCCGACGCCTATCATACATGCTACGTGCTTGCGGGCCTGAGCTCGG
CCCAGCACAAGTGGTCCCTGATGCGGCCTCGTGTTGATGCGGCCTTGATGTACGGCGATGTGTGGGCCGTGTCAC
CATGGGGCCCAGACGAGCAAATTTTTGACCAAGAGGATCGGCTATGCCCAATGAACCCAGTATACGCCATCCCTC
ATGACAGGGTCCAGCAGTGTCAAGAGTACTTTGTCTCCAAGACAGGATTCTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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