© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauB2|934 |
| Gene name | |
| Location | Contig_12:230760..232231 |
| Strand | + |
| Gene length (bp) | 1471 |
| Transcript length (bp) | 1275 |
| Coding sequence length (bp) | 1275 |
| Protein length (aa) | 425 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04146 | YTH | YT521-B-like domain | 1.1E-21 | 206 | 282 |
| PF04146 | YTH | YT521-B-like domain | 9.4E-11 | 287 | 341 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q0DA50|C3H45_ORYSJ | Zinc finger CCCH domain-containing protein 45 OS=Oryza sativa subsp. japonica GN=Os06g0677700 PE=3 SV=1 | 198 | 328 | 1.0E-20 |
| sp|A9LNK9|CPSF_ARATH | 30-kDa cleavage and polyadenylation specificity factor 30 OS=Arabidopsis thaliana GN=CPSF30 PE=1 SV=1 | 206 | 341 | 2.0E-20 |
| sp|Q9QY02|YTDC1_RAT | YTH domain-containing protein 1 OS=Rattus norvegicus GN=Ythdc1 PE=1 SV=2 | 203 | 341 | 1.0E-19 |
| sp|Q96MU7|YTDC1_HUMAN | YTH domain-containing protein 1 OS=Homo sapiens GN=YTHDC1 PE=1 SV=3 | 203 | 341 | 1.0E-19 |
| sp|E9Q5K9|YTDC1_MOUSE | YTH domain-containing protein 1 OS=Mus musculus GN=Ythdc1 PE=1 SV=2 | 203 | 341 | 2.0E-19 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q0DA50|C3H45_ORYSJ | Zinc finger CCCH domain-containing protein 45 OS=Oryza sativa subsp. japonica GN=Os06g0677700 PE=3 SV=1 | 198 | 328 | 1.0E-20 |
| sp|A9LNK9|CPSF_ARATH | 30-kDa cleavage and polyadenylation specificity factor 30 OS=Arabidopsis thaliana GN=CPSF30 PE=1 SV=1 | 206 | 341 | 2.0E-20 |
| sp|Q9QY02|YTDC1_RAT | YTH domain-containing protein 1 OS=Rattus norvegicus GN=Ythdc1 PE=1 SV=2 | 203 | 341 | 1.0E-19 |
| sp|Q96MU7|YTDC1_HUMAN | YTH domain-containing protein 1 OS=Homo sapiens GN=YTHDC1 PE=1 SV=3 | 203 | 341 | 1.0E-19 |
| sp|E9Q5K9|YTDC1_MOUSE | YTH domain-containing protein 1 OS=Mus musculus GN=Ythdc1 PE=1 SV=2 | 203 | 341 | 2.0E-19 |
| sp|Q5R746|YTDC2_PONAB | YTH domain-containing protein 2 OS=Pongo abelii GN=YTHDC2 PE=2 SV=1 | 207 | 340 | 1.0E-16 |
| sp|B2RR83|YTDC2_MOUSE | Probable ATP-dependent RNA helicase YTHDC2 OS=Mus musculus GN=Ythdc2 PE=1 SV=1 | 207 | 340 | 7.0E-16 |
| sp|Q9H6S0|YTDC2_HUMAN | Probable ATP-dependent RNA helicase YTHDC2 OS=Homo sapiens GN=YTHDC2 PE=1 SV=2 | 207 | 328 | 2.0E-15 |
| sp|Q9BYJ9|YTHD1_HUMAN | YTH domain-containing family protein 1 OS=Homo sapiens GN=YTHDF1 PE=1 SV=1 | 203 | 342 | 4.0E-09 |
| sp|P59326|YTHD1_MOUSE | YTH domain-containing family protein 1 OS=Mus musculus GN=Ythdf1 PE=1 SV=1 | 203 | 342 | 8.0E-09 |
| sp|Q8BYK6|YTHD3_MOUSE | YTH domain-containing family protein 3 OS=Mus musculus GN=Ythdf3 PE=1 SV=2 | 203 | 342 | 2.0E-08 |
| sp|Q5RFL8|YTHD3_PONAB | YTH domain-containing family protein 3 OS=Pongo abelii GN=YTHDF3 PE=2 SV=1 | 203 | 342 | 2.0E-08 |
| sp|Q7Z739|YTHD3_HUMAN | YTH domain-containing family protein 3 OS=Homo sapiens GN=YTHDF3 PE=1 SV=1 | 203 | 342 | 2.0E-08 |
| sp|Q0VCZ3|YTHD2_BOVIN | YTH domain-containing family protein 2 OS=Bos taurus GN=YTHDF2 PE=2 SV=1 | 203 | 342 | 5.0E-07 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003723 | RNA binding | Yes |
| GO:0003674 | molecular_function | No |
| GO:0005488 | binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0003676 | nucleic acid binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 22 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauB2|934 MYPSSPADADANVAPNAAKANDAAVTADNIRTSLLNKLFKVDPDIQLWLKYSGYFNLARREFTLDKLRKLEALED ERSELLLELGTPVSAVAAHKDEAIISVATKLPNMPSVPAAGDKLKQAEDGAPSVIPCKRSAVPEPFPAAPRSPPP TRQSAANVPLTASSSSAPNSTCVTPQVATSTVPQVAPVASTTSPSTSQGPARLKDSRFFLVKCSNTANIYMSQRD GMWVTQAKNEALFAKAFKECESVILFFSINKSRYFQGFARMTSLPDAKLEKPDWIKRINLTAVTEPFTVEWMNQS DTSFDDVGDLRNSLNDYRSVVVGRDGQEYPVECARKMMAIMSQTTQKQPPVLRPIVAKSNAKHSYIWRSPTKAAP KSLKADRGDPVDRADRLNWRPRPSESSSSDDMQREGTNPPNLIDFQGQL* |
| Coding | >OphauB2|934 ATGTATCCCTCTAGCCCAGCTGATGCCGACGCAAATGTTGCCCCCAATGCTGCCAAGGCCAACGATGCAGCAGTT ACAGCCGACAACATCAGAACCAGTCTCCTCAACAAGCTTTTCAAGGTGGATCCCGATATTCAACTATGGCTCAAA TACTCGGGATACTTCAACTTGGCCAGGCGCGAGTTTACTCTCGATAAACTACGCAAACTTGAGGCTCTCGAAGAT GAGCGCTCCGAGCTTCTTCTTGAACTTGGAACCCCTGTCAGCGCCGTCGCTGCCCATAAAGATGAGGCAATCATT TCTGTGGCAACCAAGCTTCCCAACATGCCAAGCGTACCTGCCGCGGGGGACAAGTTGAAGCAAGCAGAAGATGGC GCACCTTCTGTTATACCTTGCAAACGATCTGCTGTCCCGGAGCCATTTCCCGCTGCTCCTCGTTCTCCACCGCCT ACTCGTCAATCTGCTGCTAACGTCCCTCTGACAGCATCATCTTCGAGTGCTCCAAACAGCACTTGTGTAACCCCT CAAGTAGCTACCTCTACGGTCCCTCAGGTAGCTCCTGTAGCCAGCACCACCTCTCCATCTACTTCTCAGGGACCA GCCCGTCTTAAAGATTCTCGCTTCTTTCTAGTCAAATGTTCCAACACGGCAAACATCTACATGTCCCAGAGAGAC GGCATGTGGGTTACACAGGCCAAGAACGAAGCACTGTTTGCAAAGGCTTTTAAGGAATGTGAAAGCGTCATACTG TTCTTCTCTATCAATAAATCACGCTACTTTCAGGGATTTGCCCGCATGACATCACTTCCAGATGCCAAGCTCGAG AAGCCTGACTGGATCAAACGTATCAATTTGACAGCTGTAACCGAGCCCTTTACAGTCGAGTGGATGAATCAGTCA GACACGAGTTTTGACGACGTGGGCGACTTGCGCAATTCTCTCAACGACTACCGCTCCGTTGTTGTTGGCAGAGAC GGTCAAGAATACCCTGTCGAATGCGCTCGAAAGATGATGGCCATCATGAGCCAGACGACCCAGAAGCAGCCTCCT GTTCTAAGGCCCATCGTCGCAAAGAGCAACGCAAAACACTCATATATATGGAGATCGCCTACCAAGGCTGCACCT AAGTCGCTCAAGGCCGACCGCGGTGATCCAGTTGATCGAGCGGACCGATTAAACTGGCGCCCCCGGCCGAGCGAG TCGTCCAGCTCGGATGACATGCAGCGCGAGGGCACAAACCCGCCGAATCTCATTGACTTTCAGGGTCAGTTGTAG |
| Transcript | >OphauB2|934 ATGTATCCCTCTAGCCCAGCTGATGCCGACGCAAATGTTGCCCCCAATGCTGCCAAGGCCAACGATGCAGCAGTT ACAGCCGACAACATCAGAACCAGTCTCCTCAACAAGCTTTTCAAGGTGGATCCCGATATTCAACTATGGCTCAAA TACTCGGGATACTTCAACTTGGCCAGGCGCGAGTTTACTCTCGATAAACTACGCAAACTTGAGGCTCTCGAAGAT GAGCGCTCCGAGCTTCTTCTTGAACTTGGAACCCCTGTCAGCGCCGTCGCTGCCCATAAAGATGAGGCAATCATT TCTGTGGCAACCAAGCTTCCCAACATGCCAAGCGTACCTGCCGCGGGGGACAAGTTGAAGCAAGCAGAAGATGGC GCACCTTCTGTTATACCTTGCAAACGATCTGCTGTCCCGGAGCCATTTCCCGCTGCTCCTCGTTCTCCACCGCCT ACTCGTCAATCTGCTGCTAACGTCCCTCTGACAGCATCATCTTCGAGTGCTCCAAACAGCACTTGTGTAACCCCT CAAGTAGCTACCTCTACGGTCCCTCAGGTAGCTCCTGTAGCCAGCACCACCTCTCCATCTACTTCTCAGGGACCA GCCCGTCTTAAAGATTCTCGCTTCTTTCTAGTCAAATGTTCCAACACGGCAAACATCTACATGTCCCAGAGAGAC GGCATGTGGGTTACACAGGCCAAGAACGAAGCACTGTTTGCAAAGGCTTTTAAGGAATGTGAAAGCGTCATACTG TTCTTCTCTATCAATAAATCACGCTACTTTCAGGGATTTGCCCGCATGACATCACTTCCAGATGCCAAGCTCGAG AAGCCTGACTGGATCAAACGTATCAATTTGACAGCTGTAACCGAGCCCTTTACAGTCGAGTGGATGAATCAGTCA GACACGAGTTTTGACGACGTGGGCGACTTGCGCAATTCTCTCAACGACTACCGCTCCGTTGTTGTTGGCAGAGAC GGTCAAGAATACCCTGTCGAATGCGCTCGAAAGATGATGGCCATCATGAGCCAGACGACCCAGAAGCAGCCTCCT GTTCTAAGGCCCATCGTCGCAAAGAGCAACGCAAAACACTCATATATATGGAGATCGCCTACCAAGGCTGCACCT AAGTCGCTCAAGGCCGACCGCGGTGATCCAGTTGATCGAGCGGACCGATTAAACTGGCGCCCCCGGCCGAGCGAG TCGTCCAGCTCGGATGACATGCAGCGCGAGGGCACAAACCCGCCGAATCTCATTGACTTTCAGGGTCAGTTGTAG |
| Gene | >OphauB2|934 ATGTATCCCTCTAGCCCAGCTGATGCCGACGCAAATGTTGCCCCCAATGCTGCCAAGGCCAACGATGCAGCAGTT ACAGCCGACAACATCAGAACCAGTCTCCTCAACAAGCTTTTCAAGGTGGATCCCGATATTCAACTATGGCTCAAA TACTCGGGATACTTCAACTTGGCCAGGCGCGAGTTTACTCTCGATAAACTACGCAAACTTGAGGCTCTCGAAGAT GAGCGCTCCGAGCTTCTTCTTGAACTTGGAACCCCTGTCAGCGCCGTCGCTGCCCATAAAGATGAGGCAATCATT TCTGTGGCAACCAAGCTTCCCAACATGCCAAGCGTACCTGCCGCGGGGGACAAGTTGAAGCAAGCAGAAGATGGC GCACCTTCTGTTATACCTTGCAAACGATCTGCTGTCCCGGAGCCATTTCCCGCTGCTCCTCGTTCTCCACCGCCT ACTCGTCAATCTGCTGCTAACGTCCCTCTGACAGCATCATCTTCGAGTGCTCCAAACAGCACTTGTGTAACCCCT CAAGTAGCTACCTCTACGGTCCCTCAGGTAGCTCCTGTAGCCAGCACCACCTCTCCATCTACTTCTCAGGGACCA GCCCGTCTTAAAGGTGATGTTTCGTGCCCTTCAATCAAGATGGTTTTCGGGTGCTCATCTGTATCAGATTCTCGC TTCTTTCTAGTCAAATGTTCCAACACGGCAAACATCTACATGTCCCAGAGAGACGTAAGTCGCCTGAGATGCATC TTACACTCACCGCCAAGGTCTGACTAGTGCTTTAGGGCATGTGGGTTACACAGGCCAAGAACGAAGCACTGTTTG CAAAGGCTTTTAAGGAATGTGAAAGCGTCATACTGTTCTTCTCTATCAATAAATCACGCTACTTTCAGGGATTTG TGAGTAGCCGTCGCCTTGACCTGGGACGCTTTGCAAACGAACCTTTTGTGGAAATGTATAGCTATGACTGACGCA TCGTATATAGGCCCGCATGACATCACTTCCAGATGCCAAGCTCGAGAAGCCTGACTGGATCAAACGTATCAATTT GACAGCTGTAACCGAGCCCTTTACAGTCGAGTGGATGAATCAGTCAGACACGAGTTTTGACGACGTGGGCGACTT GCGCAATTCTCTCAACGACTACCGCTCCGTTGTTGTTGGCAGAGACGGTCAAGAATACCCTGTCGAATGCGCTCG AAAGATGATGGCCATCATGAGCCAGACGACCCAGAAGCAGCCTCCTGTTCTAAGGCCCATCGTCGCAAAGAGCAA CGCAAAACACTCATATATATGGAGATCGCCTACCAAGGCTGCACCTAAGTCGCTCAAGGCCGACCGCGGTGATCC AGTTGATCGAGCGGACCGATTAAACTGGCGCCCCCGGCCGAGCGAGTCGTCCAGCTCGGATGACATGCAGCGCGA GGGCACAAACCCGCCGAATCTCATTGACTTTCAGGGTCAGTTGTAG |