© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | OphauB2|8069 |
| Gene name | |
| Location | Contig_96:19160..21607 |
| Strand | - |
| Gene length (bp) | 2447 |
| Transcript length (bp) | 2127 |
| Coding sequence length (bp) | 2127 |
| Protein length (aa) | 709 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF09511 | RNA_lig_T4_1 | RNA ligase | 2.9E-79 | 32 | 262 |
| PF08302 | tRNA_lig_CPD | Fungal tRNA ligase phosphodiesterase domain | 2.1E-75 | 482 | 706 |
| PF08303 | tRNA_lig_kinase | tRNA ligase kinase domain | 5.4E-49 | 320 | 477 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P09880|TRNL_YEAST | tRNA ligase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TRL1 PE=1 SV=1 | 44 | 676 | 9.0E-137 |
| sp|Q10313|TRNL_SCHPO | tRNA ligase 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=trl1 PE=3 SV=2 | 41 | 705 | 3.0E-126 |
| sp|P43075|TRNL_CANAL | tRNA ligase OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=LIG1 PE=3 SV=2 | 44 | 659 | 6.0E-100 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003972 | RNA ligase (ATP) activity | Yes |
| GO:0005524 | ATP binding | Yes |
| GO:0006388 | tRNA splicing, via endonucleolytic cleavage and ligation | Yes |
| GO:0035639 | purine ribonucleoside triphosphate binding | No |
| GO:0017076 | purine nucleotide binding | No |
| GO:0003824 | catalytic activity | No |
| GO:0008033 | tRNA processing | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0097367 | carbohydrate derivative binding | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0016886 | ligase activity, forming phosphoric ester bonds | No |
| GO:0032553 | ribonucleotide binding | No |
| GO:0140640 | catalytic activity, acting on a nucleic acid | No |
| GO:0043167 | ion binding | No |
| GO:0000166 | nucleotide binding | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:0034470 | ncRNA processing | No |
| GO:0006396 | RNA processing | No |
| GO:0003674 | molecular_function | No |
| GO:0005488 | binding | No |
| GO:0006399 | tRNA metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0006725 | cellular aromatic compound metabolic process | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0140098 | catalytic activity, acting on RNA | No |
| GO:0009987 | cellular process | No |
| GO:0016070 | RNA metabolic process | No |
| GO:0034660 | ncRNA metabolic process | No |
| GO:0043168 | anion binding | No |
| GO:0046483 | heterocycle metabolic process | No |
| GO:0000394 | RNA splicing, via endonucleolytic cleavage and ligation | No |
| GO:0030554 | adenyl nucleotide binding | No |
| GO:0008452 | RNA ligase activity | No |
| GO:0044238 | primary metabolic process | No |
| GO:0016874 | ligase activity | No |
| GO:0008380 | RNA splicing | No |
| GO:0090304 | nucleic acid metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0036094 | small molecule binding | No |
| GO:0032559 | adenyl ribonucleotide binding | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0032555 | purine ribonucleotide binding | No |
| GO:1901265 | nucleoside phosphate binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0006139 | nucleobase-containing compound metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauB2|8069 MATDIPYVPPDHTGVRTLLTTLEEARTAKKKDANFAVRRGQYEIVVRGYDKFFNVGEVQATKWDYMATHTKPPYE LTLKENGCIIFVSGLEDDTLLVCSKNSTGKRVEEDTSHAIAGQERIEKQLAVLGRTGTNLARELRLRNATAVIEL CDDSFEEHVLAYGPEEAGLYLHGINLNLPSFATYSSAAVQSFAEEWGFRKTGVVVMHDLQEARRFLDEAAETGAH DGRSVEGFVVRCKMSKTPGVAPYVDWFFKYKFEEPYLMYHPGLAARYNKNHGIIGLRDDFLKHKHLKGLEAANMD RSTSQCENAEELSEISQDVVLCPIATIGCGKTTLARALTHLFGWGHIQNDNITGPKRPPRFNKYILDELKHYKVA FADRNNTGASERHQLISDFNMLRPTAKLVGLHYRHDAENMDKIARLTRERVLKRGDNHQTIRAATDSKKFLDIMK NFIDRFEPCNPDTEPDNGFDLVIELDPTANTRVNLEKTVTELHRFFPRLVKNMPSPEKLDEAITVALAYRPNIKT GVPGQNKSSTDKPIEYISVQIPANRVTATLERAFGRADAQTSRFYNELKQSRRVQPKFHVTLMHRASEKQNPALW QNYKNLVEEADGAGLQLGSCNVMLERVVYDNRIMAIVVRIIDDNGKWQCFNRVAHITVGTRDSSVKPKESNDLLT KWLEHGTENGQISEVVFSPKPILDGQVKAVLSR* |
| Coding | >OphauB2|8069 ATGGCAACCGACATCCCCTACGTCCCTCCCGATCATACGGGAGTGAGGACGTTGCTCACCACGCTTGAAGAGGCT CGCACAGCGAAGAAGAAGGATGCCAACTTTGCTGTCAGACGAGGACAATATGAGATTGTTGTCAGGGGCTATGAC AAGTTTTTCAACGTGGGAGAGGTTCAGGCCACCAAATGGGACTACATGGCCACCCATACGAAGCCGCCCTACGAG CTGACGCTCAAGGAGAATGGCTGCATCATCTTCGTTTCTGGTCTCGAAGACGACACCCTGCTCGTTTGCAGCAAG AACTCGACAGGTAAGCGAGTTGAAGAGGACACTAGCCACGCAATTGCCGGCCAAGAGCGCATTGAAAAGCAGCTC GCCGTCCTGGGCAGGACAGGCACCAACTTGGCACGCGAGCTGCGACTTCGCAACGCCACGGCCGTGATTGAGCTG TGCGACGACTCTTTTGAAGAGCACGTGCTCGCCTATGGCCCTGAAGAAGCCGGACTCTATCTGCACGGCATCAAC CTCAACCTGCCTTCCTTTGCCACATACTCTAGTGCCGCTGTTCAGAGCTTCGCAGAAGAATGGGGTTTCCGTAAG ACTGGCGTCGTTGTCATGCACGACTTGCAGGAGGCCAGACGTTTTCTTGACGAGGCGGCCGAGACGGGAGCCCAC GATGGCCGCAGTGTCGAAGGCTTTGTTGTCCGCTGCAAGATGAGCAAAACGCCCGGTGTTGCACCATACGTTGAC TGGTTTTTCAAGTACAAGTTTGAGGAGCCTTACCTCATGTACCACCCTGGGCTGGCCGCCCGTTACAATAAAAAC CACGGCATCATTGGTCTGCGCGACGACTTTCTCAAACACAAACATCTCAAGGGCCTCGAGGCTGCGAATATGGAT CGTTCGACCTCTCAGTGCGAAAATGCAGAGGAGCTCTCGGAGATTAGCCAAGATGTTGTCTTGTGTCCAATTGCC ACGATTGGCTGCGGCAAGACCACCTTGGCCCGGGCCCTTACTCATCTCTTTGGATGGGGGCACATTCAGAACGAT AACATCACTGGCCCTAAACGCCCGCCCAGGTTTAACAAATATATTCTCGACGAGCTCAAACACTACAAGGTGGCG TTTGCTGATCGCAACAACACTGGAGCTAGCGAGAGACATCAGTTGATTAGTGATTTCAACATGCTGCGTCCCACG GCCAAGCTCGTCGGTCTCCATTACCGCCACGATGCCGAAAACATGGACAAGATTGCACGCCTTACTCGCGAGAGG GTCCTGAAGCGTGGCGATAACCACCAAACCATTCGTGCAGCCACAGACAGCAAGAAGTTTCTTGATATCATGAAG AATTTTATTGATCGATTTGAGCCTTGCAACCCAGATACGGAGCCAGACAATGGGTTTGACCTAGTCATTGAGCTT GACCCAACGGCTAATACCCGCGTCAATCTTGAGAAAACGGTGACGGAATTGCACAGATTTTTCCCCAGATTAGTC AAAAACATGCCGTCGCCTGAGAAGCTCGATGAAGCCATCACCGTAGCACTTGCCTACCGTCCGAATATCAAAACA GGCGTTCCCGGCCAGAATAAGTCTAGCACTGACAAGCCCATCGAGTATATTTCTGTCCAAATTCCGGCGAATCGA GTCACGGCGACTCTCGAAAGGGCCTTTGGGAGAGCAGATGCCCAAACATCACGCTTTTACAACGAGTTGAAGCAG TCGCGAAGAGTACAGCCCAAGTTTCATGTGACGCTCATGCATCGTGCATCCGAAAAGCAGAACCCAGCTCTGTGG CAAAACTACAAAAACCTTGTTGAGGAGGCTGATGGCGCCGGTTTACAGCTGGGGAGCTGCAACGTCATGCTCGAA AGGGTTGTATATGACAATCGCATCATGGCCATCGTGGTTCGTATCATTGACGACAACGGCAAATGGCAGTGCTTT AACCGCGTTGCACACATTACTGTTGGCACGCGAGACTCGTCGGTCAAGCCCAAGGAAAGTAATGATCTGCTGACA AAGTGGCTGGAACATGGCACTGAGAATGGGCAAATCTCTGAAGTTGTCTTTTCGCCAAAACCCATCCTTGACGGC CAAGTCAAAGCTGTGTTGTCAAGGTAG |
| Transcript | >OphauB2|8069 ATGGCAACCGACATCCCCTACGTCCCTCCCGATCATACGGGAGTGAGGACGTTGCTCACCACGCTTGAAGAGGCT CGCACAGCGAAGAAGAAGGATGCCAACTTTGCTGTCAGACGAGGACAATATGAGATTGTTGTCAGGGGCTATGAC AAGTTTTTCAACGTGGGAGAGGTTCAGGCCACCAAATGGGACTACATGGCCACCCATACGAAGCCGCCCTACGAG CTGACGCTCAAGGAGAATGGCTGCATCATCTTCGTTTCTGGTCTCGAAGACGACACCCTGCTCGTTTGCAGCAAG AACTCGACAGGTAAGCGAGTTGAAGAGGACACTAGCCACGCAATTGCCGGCCAAGAGCGCATTGAAAAGCAGCTC GCCGTCCTGGGCAGGACAGGCACCAACTTGGCACGCGAGCTGCGACTTCGCAACGCCACGGCCGTGATTGAGCTG TGCGACGACTCTTTTGAAGAGCACGTGCTCGCCTATGGCCCTGAAGAAGCCGGACTCTATCTGCACGGCATCAAC CTCAACCTGCCTTCCTTTGCCACATACTCTAGTGCCGCTGTTCAGAGCTTCGCAGAAGAATGGGGTTTCCGTAAG ACTGGCGTCGTTGTCATGCACGACTTGCAGGAGGCCAGACGTTTTCTTGACGAGGCGGCCGAGACGGGAGCCCAC GATGGCCGCAGTGTCGAAGGCTTTGTTGTCCGCTGCAAGATGAGCAAAACGCCCGGTGTTGCACCATACGTTGAC TGGTTTTTCAAGTACAAGTTTGAGGAGCCTTACCTCATGTACCACCCTGGGCTGGCCGCCCGTTACAATAAAAAC CACGGCATCATTGGTCTGCGCGACGACTTTCTCAAACACAAACATCTCAAGGGCCTCGAGGCTGCGAATATGGAT CGTTCGACCTCTCAGTGCGAAAATGCAGAGGAGCTCTCGGAGATTAGCCAAGATGTTGTCTTGTGTCCAATTGCC ACGATTGGCTGCGGCAAGACCACCTTGGCCCGGGCCCTTACTCATCTCTTTGGATGGGGGCACATTCAGAACGAT AACATCACTGGCCCTAAACGCCCGCCCAGGTTTAACAAATATATTCTCGACGAGCTCAAACACTACAAGGTGGCG TTTGCTGATCGCAACAACACTGGAGCTAGCGAGAGACATCAGTTGATTAGTGATTTCAACATGCTGCGTCCCACG GCCAAGCTCGTCGGTCTCCATTACCGCCACGATGCCGAAAACATGGACAAGATTGCACGCCTTACTCGCGAGAGG GTCCTGAAGCGTGGCGATAACCACCAAACCATTCGTGCAGCCACAGACAGCAAGAAGTTTCTTGATATCATGAAG AATTTTATTGATCGATTTGAGCCTTGCAACCCAGATACGGAGCCAGACAATGGGTTTGACCTAGTCATTGAGCTT GACCCAACGGCTAATACCCGCGTCAATCTTGAGAAAACGGTGACGGAATTGCACAGATTTTTCCCCAGATTAGTC AAAAACATGCCGTCGCCTGAGAAGCTCGATGAAGCCATCACCGTAGCACTTGCCTACCGTCCGAATATCAAAACA GGCGTTCCCGGCCAGAATAAGTCTAGCACTGACAAGCCCATCGAGTATATTTCTGTCCAAATTCCGGCGAATCGA GTCACGGCGACTCTCGAAAGGGCCTTTGGGAGAGCAGATGCCCAAACATCACGCTTTTACAACGAGTTGAAGCAG TCGCGAAGAGTACAGCCCAAGTTTCATGTGACGCTCATGCATCGTGCATCCGAAAAGCAGAACCCAGCTCTGTGG CAAAACTACAAAAACCTTGTTGAGGAGGCTGATGGCGCCGGTTTACAGCTGGGGAGCTGCAACGTCATGCTCGAA AGGGTTGTATATGACAATCGCATCATGGCCATCGTGGTTCGTATCATTGACGACAACGGCAAATGGCAGTGCTTT AACCGCGTTGCACACATTACTGTTGGCACGCGAGACTCGTCGGTCAAGCCCAAGGAAAGTAATGATCTGCTGACA AAGTGGCTGGAACATGGCACTGAGAATGGGCAAATCTCTGAAGTTGTCTTTTCGCCAAAACCCATCCTTGACGGC CAAGTCAAAGCTGTGTTGTCAAGGTAG |
| Gene | >OphauB2|8069 ATGGCAACCGACATCCCCTACGTCCCTCCCGATCATACGGGAGTGAGGACGTTGCTCACCACGCTTGAAGAGGCT CGCACAGCGAAGAAGAAGGATGCCAACTTTGCTGTCAGACGAGGACAATATGAGGTACAGACGTCTACGAAGCCA ATCACAGTCTCTTCATGGCGTTTTCTAGACTCAGACTACAAGCGTCGTCGCCTGCCCACCAATGCTCGAGGCCTC TTCACAGTCGACAACCAGATTGTTGTCAGGGGCTATGACAAGTTTTTCAACGTGGGAGAGGTTCAGGCCACCAAA TGGGACTACATGGCCACCCATACGAAGCCGCCCTACGAGCTGACGCTCAAGGAGAATGGCTGCATCATCTTCGTT TCTGGTCTCGAAGACGACACCCTGCTCGTTTGCAGCAAGAACTCGACAGGTAAGCGAGTTGAAGAGGACACTAGC CACGCAATTGCCGGCCAAGAGCGCATTGAAAAGCAGCTCGCCGTCCTGGGCAGGACAGGCACCAACTTGGCACGC GAGCTGCGACTTCGCAACGCCACGGCCGTGATTGAGCTGTGCGACGACTCTTTTGAAGAGCACGTGCTCGCCTAT GGCCCTGAAGAAGCCGGACTCTATCTGCACGGCATCAACCTCAACCTGCCTTCCTTTGCCACATACTCTAGTGCC GCTGTTCAGAGCTTCGCAGAAGAATGGGGTTTCCGTAAGACTGGCGTCGTTGTCATGCACGACTTGCAGGAGGCC AGACGTTTTCTTGACGAGGCGGCCGAGACGGGAGCCCACGATGGCCGCAGTGTCGAAGGCTTTGTTGTCCGCTGC AAGATGAGCAAAACGCCCGGTGTTGCACCATACGTTGACTGGTTTTTCAAGTACAAGTTTGAGGAGCCTTACCTC ATGTACCGTCAGTGGCGCGAATGTACCAAATCTCTTATTTCTGGCAAGACACCCAAATACAAGAAGCACGCGGCT ATTACCAGGCAATACCTGGCGTACGCTGCTGAGCGCTTGGCTCAAGACCCTGGGCTGGCCGCCCGTTACAATAAA AACCACGGCATCATTGGTCTGCGCGACGACTTTCTCAAACACAAACATCTCAAGGGCCTCGAGGCTGCGAATATG GATCGTTCGACCTCTCAGTGCGAAAATGCAGAGGAGCTCTCGGAGATTAGCCAAGATGTTGTCTTGTGTCCAATT GCCACGATTGGCTGCGGCAAGACCACCTTGGCCCGGGCCCTTACTCATCTCTTTGGATGGGGGCACATTCAGAAC GATAACATCACTGGCCCTAAACGCCCGCCCAGGTTTAACAAATATATTCTCGACGAGCTCAAACACTACAAGGTG GCGTTTGCTGATCGCAACAACACTGGAGCTAGCGAGAGACATCAGTTGATTAGTGATTTCAACATGCTGCGTCCC ACGGCCAAGCTCGTCGGTCTCCATTACCGCCACGATGCCGAAAACATGGACAAGATTGCACGCCTTACTCGCGAG AGGGTCCTGAAGCGTGGCGATAACCACCAAACCATTCGTGCAGCCACAGACAGCAAGAAGTTTCTTGATATCATG AAGAATTTTATTGATCGATTTGAGCCTTGCAACCCAGATACGGAGCCAGACAATGGGTTTGACCTAGTCATTGAG CTTGACCCAACGGCTAATACCCGCGTCAATCTTGAGAAAACGGTGACGGAATTGCACAGATTTTTCCCCAGATTA GTCAAAAACATGCCGTCGCCTGAGAAGCTCGATGAAGCCATCACCGTAGCACTTGCCTACCGTCCGAATATCAAA ACAGGCGTTCCCGGCCAGAATAAGTCTAGCACTGACAAGCCCATCGAGTATATTTCTGTCCAAATTCCGGCGAAT CGAGTCACGGCGACTCTCGAAAGGGCCTTTGGGAGAGCAGATGCCCAAACATCACGCTTTTACAACGAGTTGAAG CAGTCGCGAAGAGTACAGCCCAAGTTTCATGTGACGCTCATGCATCGTGCATCCGAAAAGCAGAACCCAGCTCTG TGGCAAAACTACAAAAACCTTGTTGAGGAGGCTGATGGCGCCGGTTTACAGCTGGGGAGCTGCAACGTCATGCTC GAAAGGGTATGTTTCTCTCAGACCCAATGACGATTCCAGAATTCCATGTTGCTTGAGACGAAATTGAATGCTGCG CTGACGTGAAGTTTCTCTCTCAGGTTGTATATGACAATCGCATCATGGCCATCGTGGTTCGTATCATTGACGACA ACGGCAAATGGCAGTGCTTTAACCGCGTTGCACACATTACTGTTGGCACGCGAGACTCGTCGGTCAAGCCCAAGG AAAGTAATGATCTGCTGACAAAGTGGCTGGAACATGGCACTGAGAATGGGCAAATCTCTGAAGTTGTCTTTTCGC CAAAACCCATCCTTGACGGCCAAGTCAAAGCTGTGTTGTCAAGGTAG |