Fungal Genomics

at Utrecht University

General Properties

Protein IDOphauB2|8026
Gene name
LocationContig_94:48939..49770
Strand-
Gene length (bp)831
Transcript length (bp)831
Coding sequence length (bp)831
Protein length (aa) 277

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00929 RNase_T Exonuclease 7.0E-10 3 158
PF01612 DNA_pol_A_exo1 3'-5' exonuclease 3.0E-05 61 140

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q6BIK6|REXO4_DEBHA RNA exonuclease 4 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=REX4 PE=3 SV=2 2 156 2.0E-11
sp|Q12090|REXO3_YEAST RNA exonuclease 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=REX3 PE=1 SV=1 11 160 3.0E-11
sp|Q8RXK2|SDN3_ARATH Small RNA degrading nuclease 3 OS=Arabidopsis thaliana GN=SDN3 PE=1 SV=1 7 195 1.0E-10
sp|Q9CZI9|AEN_MOUSE Apoptosis-enhancing nuclease OS=Mus musculus GN=Aen PE=2 SV=1 4 159 2.0E-10
sp|B2GUW6|AEN_RAT Apoptosis-enhancing nuclease OS=Rattus norvegicus GN=Aen PE=2 SV=1 4 159 3.0E-10
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Swissprot ID Swissprot Description Start End E-value
sp|Q6BIK6|REXO4_DEBHA RNA exonuclease 4 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=REX4 PE=3 SV=2 2 156 2.0E-11
sp|Q12090|REXO3_YEAST RNA exonuclease 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=REX3 PE=1 SV=1 11 160 3.0E-11
sp|Q8RXK2|SDN3_ARATH Small RNA degrading nuclease 3 OS=Arabidopsis thaliana GN=SDN3 PE=1 SV=1 7 195 1.0E-10
sp|Q9CZI9|AEN_MOUSE Apoptosis-enhancing nuclease OS=Mus musculus GN=Aen PE=2 SV=1 4 159 2.0E-10
sp|B2GUW6|AEN_RAT Apoptosis-enhancing nuclease OS=Rattus norvegicus GN=Aen PE=2 SV=1 4 159 3.0E-10
sp|Q6CFE7|REXO3_YARLI RNA exonuclease 3 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=REX3 PE=3 SV=1 11 165 4.0E-10
sp|Q5AL29|REXO3_CANAL RNA exonuclease 3 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=REX3 PE=3 SV=1 11 165 4.0E-10
sp|Q8L7M4|SDN5_ARATH Small RNA degrading nuclease 5 OS=Arabidopsis thaliana GN=SDN5 PE=2 SV=2 11 168 5.0E-10
sp|A3KPE8|SDN1_ARATH Small RNA degrading nuclease 1 OS=Arabidopsis thaliana GN=SDN1 PE=2 SV=1 23 164 8.0E-10
sp|Q10124|PQE1_CAEEL Putative RNA exonuclease pqe-1 OS=Caenorhabditis elegans GN=pqe-1 PE=3 SV=2 58 170 2.0E-09
sp|Q757I9|REXO4_ASHGO RNA exonuclease 4 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=REX4 PE=3 SV=1 3 177 3.0E-09
sp|Q4WYA1|REXO3_ASPFU RNA exonuclease 3 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=rex3 PE=3 SV=1 11 156 3.0E-09
sp|Q6FIU7|REXO3_CANGA RNA exonuclease 3 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=REX3 PE=3 SV=1 11 159 6.0E-09
sp|Q5REE2|AEN_PONAB Apoptosis-enhancing nuclease OS=Pongo abelii GN=AEN PE=2 SV=1 15 159 2.0E-08
sp|P53331|REXO1_YEAST RNA exonuclease 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RNH70 PE=1 SV=1 10 160 2.0E-08
sp|Q9FFG1|SDN2_ARATH Small RNA degrading nuclease 2 OS=Arabidopsis thaliana GN=SDN2 PE=2 SV=1 7 149 3.0E-08
sp|O94375|REXO4_SCHPO RNA exonuclease 4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rex4 PE=3 SV=1 1 178 4.0E-08
sp|Q5B367|REXO3_EMENI RNA exonuclease 3 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=rex3 PE=3 SV=2 11 156 6.0E-08
sp|Q750A5|REXO3_ASHGO RNA exonuclease 3 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=REX3 PE=3 SV=1 11 173 2.0E-07
sp|Q4IEV5|REXO4_GIBZE RNA exonuclease 4 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=REX4 PE=3 SV=1 3 156 3.0E-07
sp|Q4WHF8|REXO4_ASPFU RNA exonuclease 4 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=rex4 PE=3 SV=1 11 156 3.0E-07
sp|Q6FQA0|REXO4_CANGA RNA exonuclease 4 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=REX4 PE=3 SV=1 2 156 4.0E-07
sp|Q2YDK1|I20L2_BOVIN Interferon-stimulated 20 kDa exonuclease-like 2 OS=Bos taurus GN=ISG20L2 PE=2 SV=1 15 159 7.0E-07
sp|Q6CJB5|REXO3_KLULA RNA exonuclease 3 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=REX3 PE=3 SV=1 1 173 9.0E-07
sp|Q8N1G1|REXO1_HUMAN RNA exonuclease 1 homolog OS=Homo sapiens GN=REXO1 PE=1 SV=3 28 172 1.0E-06
sp|Q8IX06|GOR_HUMAN Putative exonuclease GOR OS=Homo sapiens GN=REXO1L1P PE=5 SV=2 28 166 2.0E-06
sp|P48778|GOR_PANTR Exonuclease GOR OS=Pan troglodytes GN=REXO1L1 PE=2 SV=3 28 162 3.0E-06
sp|Q7TT28|REXO1_MOUSE RNA exonuclease 1 homolog OS=Mus musculus GN=Rexo1 PE=1 SV=1 23 172 4.0E-06
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GO

GO Term Description Terminal node
GO:0003676 nucleic acid binding Yes
GO:0008408 3'-5' exonuclease activity Yes
GO:0006139 nucleobase-containing compound metabolic process Yes
GO:0004518 nuclease activity No
GO:0006725 cellular aromatic compound metabolic process No
GO:0008150 biological_process No
GO:0005488 binding No
GO:0016787 hydrolase activity No
GO:0003674 molecular_function No
GO:0034641 cellular nitrogen compound metabolic process No
GO:0004527 exonuclease activity No
GO:0006807 nitrogen compound metabolic process No
GO:1901360 organic cyclic compound metabolic process No
GO:0003824 catalytic activity No
GO:0097159 organic cyclic compound binding No
GO:1901363 heterocyclic compound binding No
GO:0071704 organic substance metabolic process No
GO:0044237 cellular metabolic process No
GO:0008152 metabolic process No
GO:0009987 cellular process No
GO:0044238 primary metabolic process No
GO:0046483 heterocycle metabolic process No
GO:0016788 hydrolase activity, acting on ester bonds No

Deeploc

Deeploc data not available for this genome

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

Gene cluster ID Type of secondary metabolism gene
Cluster 37 (None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID4
Orthogroup8072
Change Orthofinder run
Species Protein ID
Ophiocordyceps australis 1348a (Ghana) OphauG2|5749
Ophiocordyceps australis map64 (Brazil) OphauB2|8026 (this protein)

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >OphauB2|8026
MAGGNGGQNLLIHVCAIDFLTGETLVQSLVYPRQMIRKWRTRCHGITRADMQEALAQNKALDGWQEARAELWKHM
DATTIVVGHAAHNDLEVLRIKHTRIVDTCILTSEAVCGEEEKLRHKYGLKDLCSSLCGVKIRGDELTGSDVHDSM
EDALATREVALWCLKHPDKLERWALYESEKHEPGFIAKLREQERRDCLEALGRCDSNRFMGWDDDSDDDWHDDWG
GDEYLGWQDFVLGEILGSRNESLREFLGSQDDPLGLFCGMSDSEVGWEEVG*
Coding >OphauB2|8026
ATGGCAGGAGGCAATGGCGGGCAAAATTTGCTGATACATGTGTGTGCCATTGACTTTCTGACGGGAGAGACGCTT
GTGCAATCACTCGTCTATCCGCGGCAGATGATCCGCAAGTGGCGTACAAGGTGCCATGGCATCACACGGGCGGAC
ATGCAGGAAGCTCTTGCGCAGAACAAGGCCTTGGATGGTTGGCAGGAGGCGCGAGCCGAGCTATGGAAGCACATG
GATGCAACGACGATTGTGGTGGGACATGCAGCACATAATGATCTTGAGGTGCTTCGCATCAAGCATACGAGGATA
GTGGACACATGTATCCTCACGTCGGAGGCCGTCTGTGGGGAGGAAGAGAAGCTGCGTCACAAGTACGGGCTCAAG
GACTTGTGCAGCAGTCTTTGCGGTGTCAAGATTCGAGGCGATGAGCTGACGGGCTCCGATGTGCACGACAGCATG
GAGGATGCTCTGGCAACGCGCGAGGTGGCGCTGTGGTGTTTGAAGCACCCTGATAAACTAGAGAGGTGGGCGTTA
TACGAAAGCGAGAAGCACGAGCCTGGGTTTATTGCCAAATTGAGAGAGCAAGAGCGGCGAGACTGTCTTGAAGCT
TTGGGCAGATGTGACAGCAACAGGTTTATGGGCTGGGATGACGACTCGGATGACGACTGGCATGACGACTGGGGG
GGTGACGAATACTTGGGATGGCAAGACTTTGTTCTCGGGGAGATTTTGGGATCGCGAAACGAAAGTCTGCGGGAA
TTTCTGGGCTCGCAAGATGACCCTCTGGGCCTATTTTGCGGAATGTCAGACAGCGAGGTTGGATGGGAGGAGGTG
GGTTGA
Transcript >OphauB2|8026
ATGGCAGGAGGCAATGGCGGGCAAAATTTGCTGATACATGTGTGTGCCATTGACTTTCTGACGGGAGAGACGCTT
GTGCAATCACTCGTCTATCCGCGGCAGATGATCCGCAAGTGGCGTACAAGGTGCCATGGCATCACACGGGCGGAC
ATGCAGGAAGCTCTTGCGCAGAACAAGGCCTTGGATGGTTGGCAGGAGGCGCGAGCCGAGCTATGGAAGCACATG
GATGCAACGACGATTGTGGTGGGACATGCAGCACATAATGATCTTGAGGTGCTTCGCATCAAGCATACGAGGATA
GTGGACACATGTATCCTCACGTCGGAGGCCGTCTGTGGGGAGGAAGAGAAGCTGCGTCACAAGTACGGGCTCAAG
GACTTGTGCAGCAGTCTTTGCGGTGTCAAGATTCGAGGCGATGAGCTGACGGGCTCCGATGTGCACGACAGCATG
GAGGATGCTCTGGCAACGCGCGAGGTGGCGCTGTGGTGTTTGAAGCACCCTGATAAACTAGAGAGGTGGGCGTTA
TACGAAAGCGAGAAGCACGAGCCTGGGTTTATTGCCAAATTGAGAGAGCAAGAGCGGCGAGACTGTCTTGAAGCT
TTGGGCAGATGTGACAGCAACAGGTTTATGGGCTGGGATGACGACTCGGATGACGACTGGCATGACGACTGGGGG
GGTGACGAATACTTGGGATGGCAAGACTTTGTTCTCGGGGAGATTTTGGGATCGCGAAACGAAAGTCTGCGGGAA
TTTCTGGGCTCGCAAGATGACCCTCTGGGCCTATTTTGCGGAATGTCAGACAGCGAGGTTGGATGGGAGGAGGTG
GGTTGA
Gene >OphauB2|8026
ATGGCAGGAGGCAATGGCGGGCAAAATTTGCTGATACATGTGTGTGCCATTGACTTTCTGACGGGAGAGACGCTT
GTGCAATCACTCGTCTATCCGCGGCAGATGATCCGCAAGTGGCGTACAAGGTGCCATGGCATCACACGGGCGGAC
ATGCAGGAAGCTCTTGCGCAGAACAAGGCCTTGGATGGTTGGCAGGAGGCGCGAGCCGAGCTATGGAAGCACATG
GATGCAACGACGATTGTGGTGGGACATGCAGCACATAATGATCTTGAGGTGCTTCGCATCAAGCATACGAGGATA
GTGGACACATGTATCCTCACGTCGGAGGCCGTCTGTGGGGAGGAAGAGAAGCTGCGTCACAAGTACGGGCTCAAG
GACTTGTGCAGCAGTCTTTGCGGTGTCAAGATTCGAGGCGATGAGCTGACGGGCTCCGATGTGCACGACAGCATG
GAGGATGCTCTGGCAACGCGCGAGGTGGCGCTGTGGTGTTTGAAGCACCCTGATAAACTAGAGAGGTGGGCGTTA
TACGAAAGCGAGAAGCACGAGCCTGGGTTTATTGCCAAATTGAGAGAGCAAGAGCGGCGAGACTGTCTTGAAGCT
TTGGGCAGATGTGACAGCAACAGGTTTATGGGCTGGGATGACGACTCGGATGACGACTGGCATGACGACTGGGGG
GGTGACGAATACTTGGGATGGCAAGACTTTGTTCTCGGGGAGATTTTGGGATCGCGAAACGAAAGTCTGCGGGAA
TTTCTGGGCTCGCAAGATGACCCTCTGGGCCTATTTTGCGGAATGTCAGACAGCGAGGTTGGATGGGAGGAGGTG
GGTTGA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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