© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauB2|8026 |
| Gene name | |
| Location | Contig_94:48939..49770 |
| Strand | - |
| Gene length (bp) | 831 |
| Transcript length (bp) | 831 |
| Coding sequence length (bp) | 831 |
| Protein length (aa) | 277 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00929 | RNase_T | Exonuclease | 7.0E-10 | 3 | 158 |
| PF01612 | DNA_pol_A_exo1 | 3'-5' exonuclease | 3.0E-05 | 61 | 140 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q6BIK6|REXO4_DEBHA | RNA exonuclease 4 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=REX4 PE=3 SV=2 | 2 | 156 | 2.0E-11 |
| sp|Q12090|REXO3_YEAST | RNA exonuclease 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=REX3 PE=1 SV=1 | 11 | 160 | 3.0E-11 |
| sp|Q8RXK2|SDN3_ARATH | Small RNA degrading nuclease 3 OS=Arabidopsis thaliana GN=SDN3 PE=1 SV=1 | 7 | 195 | 1.0E-10 |
| sp|Q9CZI9|AEN_MOUSE | Apoptosis-enhancing nuclease OS=Mus musculus GN=Aen PE=2 SV=1 | 4 | 159 | 2.0E-10 |
| sp|B2GUW6|AEN_RAT | Apoptosis-enhancing nuclease OS=Rattus norvegicus GN=Aen PE=2 SV=1 | 4 | 159 | 3.0E-10 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q6BIK6|REXO4_DEBHA | RNA exonuclease 4 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=REX4 PE=3 SV=2 | 2 | 156 | 2.0E-11 |
| sp|Q12090|REXO3_YEAST | RNA exonuclease 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=REX3 PE=1 SV=1 | 11 | 160 | 3.0E-11 |
| sp|Q8RXK2|SDN3_ARATH | Small RNA degrading nuclease 3 OS=Arabidopsis thaliana GN=SDN3 PE=1 SV=1 | 7 | 195 | 1.0E-10 |
| sp|Q9CZI9|AEN_MOUSE | Apoptosis-enhancing nuclease OS=Mus musculus GN=Aen PE=2 SV=1 | 4 | 159 | 2.0E-10 |
| sp|B2GUW6|AEN_RAT | Apoptosis-enhancing nuclease OS=Rattus norvegicus GN=Aen PE=2 SV=1 | 4 | 159 | 3.0E-10 |
| sp|Q6CFE7|REXO3_YARLI | RNA exonuclease 3 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=REX3 PE=3 SV=1 | 11 | 165 | 4.0E-10 |
| sp|Q5AL29|REXO3_CANAL | RNA exonuclease 3 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=REX3 PE=3 SV=1 | 11 | 165 | 4.0E-10 |
| sp|Q8L7M4|SDN5_ARATH | Small RNA degrading nuclease 5 OS=Arabidopsis thaliana GN=SDN5 PE=2 SV=2 | 11 | 168 | 5.0E-10 |
| sp|A3KPE8|SDN1_ARATH | Small RNA degrading nuclease 1 OS=Arabidopsis thaliana GN=SDN1 PE=2 SV=1 | 23 | 164 | 8.0E-10 |
| sp|Q10124|PQE1_CAEEL | Putative RNA exonuclease pqe-1 OS=Caenorhabditis elegans GN=pqe-1 PE=3 SV=2 | 58 | 170 | 2.0E-09 |
| sp|Q757I9|REXO4_ASHGO | RNA exonuclease 4 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=REX4 PE=3 SV=1 | 3 | 177 | 3.0E-09 |
| sp|Q4WYA1|REXO3_ASPFU | RNA exonuclease 3 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=rex3 PE=3 SV=1 | 11 | 156 | 3.0E-09 |
| sp|Q6FIU7|REXO3_CANGA | RNA exonuclease 3 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=REX3 PE=3 SV=1 | 11 | 159 | 6.0E-09 |
| sp|Q5REE2|AEN_PONAB | Apoptosis-enhancing nuclease OS=Pongo abelii GN=AEN PE=2 SV=1 | 15 | 159 | 2.0E-08 |
| sp|P53331|REXO1_YEAST | RNA exonuclease 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RNH70 PE=1 SV=1 | 10 | 160 | 2.0E-08 |
| sp|Q9FFG1|SDN2_ARATH | Small RNA degrading nuclease 2 OS=Arabidopsis thaliana GN=SDN2 PE=2 SV=1 | 7 | 149 | 3.0E-08 |
| sp|O94375|REXO4_SCHPO | RNA exonuclease 4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rex4 PE=3 SV=1 | 1 | 178 | 4.0E-08 |
| sp|Q5B367|REXO3_EMENI | RNA exonuclease 3 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=rex3 PE=3 SV=2 | 11 | 156 | 6.0E-08 |
| sp|Q750A5|REXO3_ASHGO | RNA exonuclease 3 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=REX3 PE=3 SV=1 | 11 | 173 | 2.0E-07 |
| sp|Q4IEV5|REXO4_GIBZE | RNA exonuclease 4 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=REX4 PE=3 SV=1 | 3 | 156 | 3.0E-07 |
| sp|Q4WHF8|REXO4_ASPFU | RNA exonuclease 4 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=rex4 PE=3 SV=1 | 11 | 156 | 3.0E-07 |
| sp|Q6FQA0|REXO4_CANGA | RNA exonuclease 4 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=REX4 PE=3 SV=1 | 2 | 156 | 4.0E-07 |
| sp|Q2YDK1|I20L2_BOVIN | Interferon-stimulated 20 kDa exonuclease-like 2 OS=Bos taurus GN=ISG20L2 PE=2 SV=1 | 15 | 159 | 7.0E-07 |
| sp|Q6CJB5|REXO3_KLULA | RNA exonuclease 3 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=REX3 PE=3 SV=1 | 1 | 173 | 9.0E-07 |
| sp|Q8N1G1|REXO1_HUMAN | RNA exonuclease 1 homolog OS=Homo sapiens GN=REXO1 PE=1 SV=3 | 28 | 172 | 1.0E-06 |
| sp|Q8IX06|GOR_HUMAN | Putative exonuclease GOR OS=Homo sapiens GN=REXO1L1P PE=5 SV=2 | 28 | 166 | 2.0E-06 |
| sp|P48778|GOR_PANTR | Exonuclease GOR OS=Pan troglodytes GN=REXO1L1 PE=2 SV=3 | 28 | 162 | 3.0E-06 |
| sp|Q7TT28|REXO1_MOUSE | RNA exonuclease 1 homolog OS=Mus musculus GN=Rexo1 PE=1 SV=1 | 23 | 172 | 4.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003676 | nucleic acid binding | Yes |
| GO:0008408 | 3'-5' exonuclease activity | Yes |
| GO:0006139 | nucleobase-containing compound metabolic process | Yes |
| GO:0004518 | nuclease activity | No |
| GO:0006725 | cellular aromatic compound metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0005488 | binding | No |
| GO:0016787 | hydrolase activity | No |
| GO:0003674 | molecular_function | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:0004527 | exonuclease activity | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0003824 | catalytic activity | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0009987 | cellular process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0046483 | heterocycle metabolic process | No |
| GO:0016788 | hydrolase activity, acting on ester bonds | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 23 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauB2|8026 MAGGNGGQNLLIHVCAIDFLTGETLVQSLVYPRQMIRKWRTRCHGITRADMQEALAQNKALDGWQEARAELWKHM DATTIVVGHAAHNDLEVLRIKHTRIVDTCILTSEAVCGEEEKLRHKYGLKDLCSSLCGVKIRGDELTGSDVHDSM EDALATREVALWCLKHPDKLERWALYESEKHEPGFIAKLREQERRDCLEALGRCDSNRFMGWDDDSDDDWHDDWG GDEYLGWQDFVLGEILGSRNESLREFLGSQDDPLGLFCGMSDSEVGWEEVG* |
| Coding | >OphauB2|8026 ATGGCAGGAGGCAATGGCGGGCAAAATTTGCTGATACATGTGTGTGCCATTGACTTTCTGACGGGAGAGACGCTT GTGCAATCACTCGTCTATCCGCGGCAGATGATCCGCAAGTGGCGTACAAGGTGCCATGGCATCACACGGGCGGAC ATGCAGGAAGCTCTTGCGCAGAACAAGGCCTTGGATGGTTGGCAGGAGGCGCGAGCCGAGCTATGGAAGCACATG GATGCAACGACGATTGTGGTGGGACATGCAGCACATAATGATCTTGAGGTGCTTCGCATCAAGCATACGAGGATA GTGGACACATGTATCCTCACGTCGGAGGCCGTCTGTGGGGAGGAAGAGAAGCTGCGTCACAAGTACGGGCTCAAG GACTTGTGCAGCAGTCTTTGCGGTGTCAAGATTCGAGGCGATGAGCTGACGGGCTCCGATGTGCACGACAGCATG GAGGATGCTCTGGCAACGCGCGAGGTGGCGCTGTGGTGTTTGAAGCACCCTGATAAACTAGAGAGGTGGGCGTTA TACGAAAGCGAGAAGCACGAGCCTGGGTTTATTGCCAAATTGAGAGAGCAAGAGCGGCGAGACTGTCTTGAAGCT TTGGGCAGATGTGACAGCAACAGGTTTATGGGCTGGGATGACGACTCGGATGACGACTGGCATGACGACTGGGGG GGTGACGAATACTTGGGATGGCAAGACTTTGTTCTCGGGGAGATTTTGGGATCGCGAAACGAAAGTCTGCGGGAA TTTCTGGGCTCGCAAGATGACCCTCTGGGCCTATTTTGCGGAATGTCAGACAGCGAGGTTGGATGGGAGGAGGTG GGTTGA |
| Transcript | >OphauB2|8026 ATGGCAGGAGGCAATGGCGGGCAAAATTTGCTGATACATGTGTGTGCCATTGACTTTCTGACGGGAGAGACGCTT GTGCAATCACTCGTCTATCCGCGGCAGATGATCCGCAAGTGGCGTACAAGGTGCCATGGCATCACACGGGCGGAC ATGCAGGAAGCTCTTGCGCAGAACAAGGCCTTGGATGGTTGGCAGGAGGCGCGAGCCGAGCTATGGAAGCACATG GATGCAACGACGATTGTGGTGGGACATGCAGCACATAATGATCTTGAGGTGCTTCGCATCAAGCATACGAGGATA GTGGACACATGTATCCTCACGTCGGAGGCCGTCTGTGGGGAGGAAGAGAAGCTGCGTCACAAGTACGGGCTCAAG GACTTGTGCAGCAGTCTTTGCGGTGTCAAGATTCGAGGCGATGAGCTGACGGGCTCCGATGTGCACGACAGCATG GAGGATGCTCTGGCAACGCGCGAGGTGGCGCTGTGGTGTTTGAAGCACCCTGATAAACTAGAGAGGTGGGCGTTA TACGAAAGCGAGAAGCACGAGCCTGGGTTTATTGCCAAATTGAGAGAGCAAGAGCGGCGAGACTGTCTTGAAGCT TTGGGCAGATGTGACAGCAACAGGTTTATGGGCTGGGATGACGACTCGGATGACGACTGGCATGACGACTGGGGG GGTGACGAATACTTGGGATGGCAAGACTTTGTTCTCGGGGAGATTTTGGGATCGCGAAACGAAAGTCTGCGGGAA TTTCTGGGCTCGCAAGATGACCCTCTGGGCCTATTTTGCGGAATGTCAGACAGCGAGGTTGGATGGGAGGAGGTG GGTTGA |
| Gene | >OphauB2|8026 ATGGCAGGAGGCAATGGCGGGCAAAATTTGCTGATACATGTGTGTGCCATTGACTTTCTGACGGGAGAGACGCTT GTGCAATCACTCGTCTATCCGCGGCAGATGATCCGCAAGTGGCGTACAAGGTGCCATGGCATCACACGGGCGGAC ATGCAGGAAGCTCTTGCGCAGAACAAGGCCTTGGATGGTTGGCAGGAGGCGCGAGCCGAGCTATGGAAGCACATG GATGCAACGACGATTGTGGTGGGACATGCAGCACATAATGATCTTGAGGTGCTTCGCATCAAGCATACGAGGATA GTGGACACATGTATCCTCACGTCGGAGGCCGTCTGTGGGGAGGAAGAGAAGCTGCGTCACAAGTACGGGCTCAAG GACTTGTGCAGCAGTCTTTGCGGTGTCAAGATTCGAGGCGATGAGCTGACGGGCTCCGATGTGCACGACAGCATG GAGGATGCTCTGGCAACGCGCGAGGTGGCGCTGTGGTGTTTGAAGCACCCTGATAAACTAGAGAGGTGGGCGTTA TACGAAAGCGAGAAGCACGAGCCTGGGTTTATTGCCAAATTGAGAGAGCAAGAGCGGCGAGACTGTCTTGAAGCT TTGGGCAGATGTGACAGCAACAGGTTTATGGGCTGGGATGACGACTCGGATGACGACTGGCATGACGACTGGGGG GGTGACGAATACTTGGGATGGCAAGACTTTGTTCTCGGGGAGATTTTGGGATCGCGAAACGAAAGTCTGCGGGAA TTTCTGGGCTCGCAAGATGACCCTCTGGGCCTATTTTGCGGAATGTCAGACAGCGAGGTTGGATGGGAGGAGGTG GGTTGA |