Fungal Genomics

at Utrecht University

General Properties

Protein IDOphauB2|8006
Gene name
LocationContig_93:59978..60764
Strand+
Gene length (bp)786
Transcript length (bp)585
Coding sequence length (bp)585
Protein length (aa) 195

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF03357 Snf7 Snf7 3.1E-27 1 155

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|P0C149|SNF7_MAGO7 Vacuolar-sorting protein SNF7 OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=SNF7 PE=3 SV=1 1 194 9.0E-74
sp|Q871Y8|SNF7_NEUCR Vacuolar-sorting protein snf7 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=vsp-3 PE=3 SV=1 1 194 3.0E-57
sp|Q5B5E0|SNF7_EMENI Vacuolar-sorting protein snf7 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=snf7 PE=1 SV=1 1 167 2.0E-45
sp|Q9P7F7|SNF7_SCHPO Vacuolar-sorting protein snf7 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=snf7 PE=3 SV=1 1 194 2.0E-32
sp|Q6BSH2|SNF7_DEBHA Vacuolar-sorting protein SNF7 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=SNF7 PE=3 SV=2 1 194 8.0E-31
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Swissprot ID Swissprot Description Start End E-value
sp|P0C149|SNF7_MAGO7 Vacuolar-sorting protein SNF7 OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=SNF7 PE=3 SV=1 1 194 9.0E-74
sp|Q871Y8|SNF7_NEUCR Vacuolar-sorting protein snf7 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=vsp-3 PE=3 SV=1 1 194 3.0E-57
sp|Q5B5E0|SNF7_EMENI Vacuolar-sorting protein snf7 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=snf7 PE=1 SV=1 1 167 2.0E-45
sp|Q9P7F7|SNF7_SCHPO Vacuolar-sorting protein snf7 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=snf7 PE=3 SV=1 1 194 2.0E-32
sp|Q6BSH2|SNF7_DEBHA Vacuolar-sorting protein SNF7 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=SNF7 PE=3 SV=2 1 194 8.0E-31
sp|P0CR54|SNF7_CRYNJ Vacuolar-sorting protein SNF7 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=SNF7 PE=3 SV=1 1 194 2.0E-27
sp|P0CR55|SNF7_CRYNB Vacuolar-sorting protein SNF7 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=SNF7 PE=3 SV=1 1 194 2.0E-27
sp|Q753W3|SNF7_ASHGO Vacuolar-sorting protein SNF7 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=SNF7 PE=3 SV=1 1 194 6.0E-25
sp|Q6FW96|SNF7_CANGA Vacuolar-sorting protein SNF7 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=SNF7 PE=3 SV=1 1 127 3.0E-22
sp|P39929|SNF7_YEAST Vacuolar-sorting protein SNF7 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SNF7 PE=1 SV=1 1 127 2.0E-20
sp|Q5ABD0|SNF7_CANAL Vacuolar-sorting protein SNF7 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=SNF7 PE=3 SV=1 2 126 1.0E-18
sp|Q9D8B3|CHM4B_MOUSE Charged multivesicular body protein 4b OS=Mus musculus GN=Chmp4b PE=1 SV=2 1 128 1.0E-18
sp|Q9H444|CHM4B_HUMAN Charged multivesicular body protein 4b OS=Homo sapiens GN=CHMP4B PE=1 SV=1 1 128 1.0E-18
sp|Q5ZHP5|CHM4B_CHICK Charged multivesicular body protein 4b OS=Gallus gallus GN=CHMP4B PE=2 SV=1 1 128 3.0E-18
sp|Q5XGW6|CHM4B_XENLA Charged multivesicular body protein 4b OS=Xenopus laevis GN=chmp4b PE=2 SV=1 1 182 3.0E-18
sp|Q6GL11|CHM4B_XENTR Charged multivesicular body protein 4b OS=Xenopus tropicalis GN=chmp4b PE=2 SV=1 1 128 5.0E-18
sp|Q6CBS3|SNF7_YARLI Vacuolar-sorting protein SNF7 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=SNF7 PE=3 SV=1 1 194 2.0E-17
sp|Q6IQ73|CHM4C_DANRE Charged multivesicular body protein 4c OS=Danio rerio GN=chmp4c PE=2 SV=1 1 166 2.0E-17
sp|Q6CJL0|SNF7_KLULA Vacuolar-sorting protein SNF7 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=SNF7 PE=3 SV=1 1 120 2.0E-16
sp|Q7ZVC4|CHM4B_DANRE Charged multivesicular body protein 4b OS=Danio rerio GN=chmp4b PE=2 SV=1 1 128 2.0E-16
sp|Q9D7F7|CHM4C_MOUSE Charged multivesicular body protein 4c OS=Mus musculus GN=Chmp4c PE=2 SV=1 1 125 2.0E-15
sp|Q96CF2|CHM4C_HUMAN Charged multivesicular body protein 4c OS=Homo sapiens GN=CHMP4C PE=1 SV=1 1 125 4.0E-15
sp|A2VDY3|CHM4A_BOVIN Charged multivesicular body protein 4a OS=Bos taurus GN=CHMP4A PE=2 SV=1 1 193 6.0E-15
sp|Q569C1|CHM4C_RAT Charged multivesicular body protein 4c OS=Rattus norvegicus GN=Chmp4c PE=2 SV=1 1 125 1.0E-14
sp|Q9BY43|CHM4A_HUMAN Charged multivesicular body protein 4a OS=Homo sapiens GN=CHMP4A PE=1 SV=3 1 128 2.0E-14
sp|Q6GNN8|CHM4C_XENLA Charged multivesicular body protein 4c OS=Xenopus laevis GN=chmp4c PE=2 SV=1 1 127 4.0E-14
sp|P59074|CHM4P_HUMAN Putative charged multivesicular body protein 4B-like protein CHMP4BP1 OS=Homo sapiens GN=CHMP4BP1 PE=5 SV=1 1 128 2.0E-11
sp|Q86H98|CHMP4_DICDI Charged multivesicular body protein 4 OS=Dictyostelium discoideum GN=chmp4 PE=3 SV=1 1 146 2.0E-08
sp|Q5R861|CHMP6_PONAB Charged multivesicular body protein 6 OS=Pongo abelii GN=CHMP6 PE=2 SV=3 2 168 2.0E-06
sp|Q96FZ7|CHMP6_HUMAN Charged multivesicular body protein 6 OS=Homo sapiens GN=CHMP6 PE=1 SV=3 2 168 2.0E-06
sp|Q54KZ4|CHMP6_DICDI Charged multivesicular body protein 6 OS=Dictyostelium discoideum GN=chmp6 PE=3 SV=2 7 157 4.0E-06
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GO

GO Term Description Terminal node
GO:0007034 vacuolar transport Yes
GO:0046907 intracellular transport No
GO:0009987 cellular process No
GO:0051179 localization No
GO:0008150 biological_process No
GO:0051649 establishment of localization in cell No
GO:0051234 establishment of localization No
GO:0006810 transport No
GO:0051641 cellular localization No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 38 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >OphauB2|8006
MLQKREKHLQNQIDEQMAVARKNANTNKNVAKAALRRKKTVEHALDQTIAQIGTVEQQINSIESANINRETLAAM
EKASHAMKQIHGKLTPEKVDETMEKLRDQNALSEEIVSAITSASISDPIDDGEIEEELAELEQKQLDEDILKTGN
VPVADAVHKMPMPANTEPLSSRRVTQEEDDEEAELKRLQEEMAM*
Coding >OphauB2|8006
ATGCTACAGAAGCGCGAGAAGCATCTCCAGAATCAAATAGACGAGCAGATGGCAGTTGCGCGCAAGAATGCAAAT
ACAAACAAGAATGTGGCAAAGGCAGCGCTGCGACGCAAGAAGACGGTGGAGCACGCGCTGGACCAGACGATTGCG
CAGATTGGGACGGTGGAACAACAAATCAACTCGATCGAGTCGGCGAATATCAACCGGGAGACGCTGGCAGCCATG
GAAAAGGCCAGCCATGCCATGAAGCAAATCCATGGCAAGTTGACACCTGAAAAGGTGGATGAGACGATGGAGAAG
CTACGGGACCAGAATGCTCTCAGCGAGGAAATTGTATCGGCCATTACAAGCGCAAGCATTTCGGATCCGATTGAC
GATGGTGAAATCGAGGAGGAGCTTGCTGAGCTTGAGCAAAAGCAGCTGGACGAGGATATTCTCAAGACGGGCAAC
GTGCCAGTGGCGGATGCCGTGCACAAGATGCCAATGCCTGCCAATACAGAACCGCTATCTAGCAGGCGTGTGACG
CAAGAAGAGGACGACGAGGAGGCGGAGCTCAAAAGACTTCAAGAAGAAATGGCAATGTGA
Transcript >OphauB2|8006
ATGCTACAGAAGCGCGAGAAGCATCTCCAGAATCAAATAGACGAGCAGATGGCAGTTGCGCGCAAGAATGCAAAT
ACAAACAAGAATGTGGCAAAGGCAGCGCTGCGACGCAAGAAGACGGTGGAGCACGCGCTGGACCAGACGATTGCG
CAGATTGGGACGGTGGAACAACAAATCAACTCGATCGAGTCGGCGAATATCAACCGGGAGACGCTGGCAGCCATG
GAAAAGGCCAGCCATGCCATGAAGCAAATCCATGGCAAGTTGACACCTGAAAAGGTGGATGAGACGATGGAGAAG
CTACGGGACCAGAATGCTCTCAGCGAGGAAATTGTATCGGCCATTACAAGCGCAAGCATTTCGGATCCGATTGAC
GATGGTGAAATCGAGGAGGAGCTTGCTGAGCTTGAGCAAAAGCAGCTGGACGAGGATATTCTCAAGACGGGCAAC
GTGCCAGTGGCGGATGCCGTGCACAAGATGCCAATGCCTGCCAATACAGAACCGCTATCTAGCAGGCGTGTGACG
CAAGAAGAGGACGACGAGGAGGCGGAGCTCAAAAGACTTCAAGAAGAAATGGCAATGTGA
Gene >OphauB2|8006
ATGCTACAGAAGCGCGAGAAGCATCTCCAGAATCAAATAGACGAGCAGATGGCAGTTGCGCGCAAGAATGCAAAT
ACAAACAAGAATGGTGGGCATAATGTCCCGTCGACGGCCAAGGCAGGAGGGGGTGGTTTGGAACAGAGCTAATGG
AATGATAGTGGCAAAGGCAGCGCTGCGACGCAAGAAGACGGTGGAGCACGCGCTGGACCAGACGATTGCGCAGAT
TGGGACGGTGGAACAACAAATCAACTCGATCGAGTCGGCGAATATCAACCGGGAGACGCTGGCAGCCATGGAAAA
GGCCAGCCATGCCATGAAGCAAATCCATGGCAAGTTGACACCTGAAAAGGTGGATGAGACGATGTATGTGGCTCT
GCGGCTTGCCAGGGAAGAGTGGTTGTGCTTACGAATACTCCTTTTCCTTTTCTTGTACGCAGGGAGAAGCTACGG
GACCAGAATGCTCTCAGCGAGGAAATTGTATCGGCCATTACAAGCGCAAGCATTTCGGATCCGATTGACGATGGT
GAAATCGAGGAGGAGCTTGCTGAGCTTGAGCAAAAGCAGCTGGACGAGGATATTCTCAAGACGGGCAACGTGCCA
GTGGCGGATGCCGTGCACAAGATGCCAATGCCTGCCAATACAGAACGTGAGTTGCCGAGTCTTTGTGTGGGGTTG
AGAGCTTGGGTGCTGACGGACGAGGCAGCGCTATCTAGCAGGCGTGTGACGCAAGAAGAGGACGACGAGGAGGCG
GAGCTCAAAAGACTTCAAGAAGAAATGGCAATGTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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