Fungal Genomics

at Utrecht University

General Properties

Protein IDOphauB2|8002
Gene name
LocationContig_93:46880..48537
Strand+
Gene length (bp)1657
Transcript length (bp)1461
Coding sequence length (bp)1461
Protein length (aa) 487

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01585 G-patch G-patch domain 1.2E-12 317 357
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.5E-04 423 467

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|P42698|DR111_ARATH DNA-damage-repair/toleration protein DRT111, chloroplastic OS=Arabidopsis thaliana GN=DRT111 PE=1 SV=2 316 479 1.0E-15
sp|Q8JZX4|SPF45_MOUSE Splicing factor 45 OS=Mus musculus GN=Rbm17 PE=1 SV=1 321 477 5.0E-12
sp|Q96I25|SPF45_HUMAN Splicing factor 45 OS=Homo sapiens GN=RBM17 PE=1 SV=1 321 477 1.0E-11

GO

GO Term Description Terminal node
GO:0003723 RNA binding Yes
GO:0003676 nucleic acid binding Yes
GO:0003674 molecular_function No
GO:0005488 binding No
GO:1901363 heterocyclic compound binding No
GO:0097159 organic cyclic compound binding No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 12 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >OphauB2|8002
MAAPPPPPAAARPGLSLYADLHDPNESSNATISAAPVVYGQTNASSTETHKLNAALQFQPHIRRPPVKQSKSKPA
FAKKIVKSDTADTAPAPPAAPTATTQAAPKTSLADWAPTEQDEWMYGTGEKRQRGGRKKKKRQQQDRTEETNWDE
FYDPSKPTNVEEYVKSDEKITEVLDWKAQLYRHRKRRASSDISSDEDDAPSMQTQFAPPPSMAFAPPPMSPPRPA
SPHRTDNEPYDRHPNTTEAPVSDLNPPPPPPPPSQPASNPTPPPPSAGATISRAPVMYTQMPSSDKSPGHGEPPA
PEDDNPEEPERSKRPGQSGFALRLMSKYGWTRGTGLGANESGIVNPLRVHVDKRRKKADADGGGWAEPAGKGKII
GGHRKAEQSKFGKMSEVIVLGNMLENMPDLQSEIANGLGQEIGEECGEKYGRVERIYIDQEHRQVFIKFTDQVSA
LRAVNELDERVFNGNTIAPRFYDAEKFERGVYTSKK*
Coding >OphauB2|8002
ATGGCAGCTCCTCCTCCGCCTCCTGCTGCTGCGCGTCCCGGCCTCTCCCTGTACGCTGATTTACACGATCCCAAC
GAATCTTCCAATGCAACCATTTCCGCCGCGCCAGTAGTATACGGCCAGACCAACGCATCGTCGACAGAGACTCAC
AAGCTCAATGCCGCTCTCCAGTTTCAGCCACATATTCGCCGCCCGCCCGTCAAGCAATCAAAGTCTAAGCCAGCG
TTTGCAAAGAAAATCGTCAAAAGTGACACGGCGGACACAGCTCCTGCACCACCGGCGGCCCCTACAGCCACTACT
CAAGCAGCGCCAAAGACTTCACTGGCTGACTGGGCTCCCACTGAGCAGGATGAATGGATGTACGGCACTGGGGAG
AAGCGTCAGCGTGGCGGCCGCAAGAAAAAGAAGAGGCAGCAGCAAGACAGGACCGAGGAGACCAACTGGGACGAG
TTTTATGACCCGAGCAAGCCGACCAATGTCGAGGAATATGTAAAGAGCGATGAGAAGATTACCGAGGTGCTCGAT
TGGAAGGCCCAGCTATACAGACATCGCAAGAGACGTGCCTCGAGCGACATCTCAAGTGATGAAGACGATGCCCCG
TCTATGCAGACGCAATTCGCACCACCCCCGTCAATGGCATTTGCGCCACCGCCCATGTCACCTCCACGACCTGCC
TCGCCCCATCGCACCGACAATGAACCATACGACCGCCATCCAAACACTACCGAAGCGCCTGTATCAGACTTGAAT
CCTCCTCCACCTCCTCCTCCTCCATCACAACCAGCCAGCAATCCTACCCCTCCACCCCCATCTGCCGGAGCCACT
ATATCACGGGCCCCGGTAATGTACACGCAAATGCCTTCTTCAGATAAATCTCCCGGCCATGGCGAGCCTCCTGCC
CCCGAGGACGACAACCCCGAGGAGCCGGAGCGTTCAAAACGACCTGGCCAATCTGGCTTCGCCCTCCGCCTCATG
AGCAAGTACGGCTGGACAAGAGGCACTGGCCTCGGCGCAAACGAGTCTGGCATCGTCAACCCGCTCCGCGTCCAC
GTCGACAAGCGTCGCAAAAAGGCTGATGCCGACGGCGGCGGCTGGGCCGAGCCTGCAGGCAAGGGCAAGATTATT
GGTGGACACCGCAAGGCAGAGCAAAGCAAATTTGGCAAAATGAGCGAAGTCATTGTCTTGGGCAATATGCTCGAG
AATATGCCAGACCTGCAAAGCGAAATTGCAAATGGACTTGGCCAAGAAATTGGTGAAGAGTGCGGAGAAAAGTAC
GGCCGCGTAGAACGTATATACATTGACCAAGAACACCGCCAAGTCTTCATCAAGTTTACCGACCAAGTATCAGCT
CTTCGCGCCGTCAACGAGCTCGATGAGCGCGTCTTTAATGGCAACACCATTGCCCCAAGGTTTTACGATGCAGAA
AAGTTTGAGCGAGGCGTCTACACGTCGAAAAAGTAG
Transcript >OphauB2|8002
ATGGCAGCTCCTCCTCCGCCTCCTGCTGCTGCGCGTCCCGGCCTCTCCCTGTACGCTGATTTACACGATCCCAAC
GAATCTTCCAATGCAACCATTTCCGCCGCGCCAGTAGTATACGGCCAGACCAACGCATCGTCGACAGAGACTCAC
AAGCTCAATGCCGCTCTCCAGTTTCAGCCACATATTCGCCGCCCGCCCGTCAAGCAATCAAAGTCTAAGCCAGCG
TTTGCAAAGAAAATCGTCAAAAGTGACACGGCGGACACAGCTCCTGCACCACCGGCGGCCCCTACAGCCACTACT
CAAGCAGCGCCAAAGACTTCACTGGCTGACTGGGCTCCCACTGAGCAGGATGAATGGATGTACGGCACTGGGGAG
AAGCGTCAGCGTGGCGGCCGCAAGAAAAAGAAGAGGCAGCAGCAAGACAGGACCGAGGAGACCAACTGGGACGAG
TTTTATGACCCGAGCAAGCCGACCAATGTCGAGGAATATGTAAAGAGCGATGAGAAGATTACCGAGGTGCTCGAT
TGGAAGGCCCAGCTATACAGACATCGCAAGAGACGTGCCTCGAGCGACATCTCAAGTGATGAAGACGATGCCCCG
TCTATGCAGACGCAATTCGCACCACCCCCGTCAATGGCATTTGCGCCACCGCCCATGTCACCTCCACGACCTGCC
TCGCCCCATCGCACCGACAATGAACCATACGACCGCCATCCAAACACTACCGAAGCGCCTGTATCAGACTTGAAT
CCTCCTCCACCTCCTCCTCCTCCATCACAACCAGCCAGCAATCCTACCCCTCCACCCCCATCTGCCGGAGCCACT
ATATCACGGGCCCCGGTAATGTACACGCAAATGCCTTCTTCAGATAAATCTCCCGGCCATGGCGAGCCTCCTGCC
CCCGAGGACGACAACCCCGAGGAGCCGGAGCGTTCAAAACGACCTGGCCAATCTGGCTTCGCCCTCCGCCTCATG
AGCAAGTACGGCTGGACAAGAGGCACTGGCCTCGGCGCAAACGAGTCTGGCATCGTCAACCCGCTCCGCGTCCAC
GTCGACAAGCGTCGCAAAAAGGCTGATGCCGACGGCGGCGGCTGGGCCGAGCCTGCAGGCAAGGGCAAGATTATT
GGTGGACACCGCAAGGCAGAGCAAAGCAAATTTGGCAAAATGAGCGAAGTCATTGTCTTGGGCAATATGCTCGAG
AATATGCCAGACCTGCAAAGCGAAATTGCAAATGGACTTGGCCAAGAAATTGGTGAAGAGTGCGGAGAAAAGTAC
GGCCGCGTAGAACGTATATACATTGACCAAGAACACCGCCAAGTCTTCATCAAGTTTACCGACCAAGTATCAGCT
CTTCGCGCCGTCAACGAGCTCGATGAGCGCGTCTTTAATGGCAACACCATTGCCCCAAGGTTTTACGATGCAGAA
AAGTTTGAGCGAGGCGTCTACACGTCGAAAAAGTAG
Gene >OphauB2|8002
ATGGCAGCTCCTCCTCCGCCTCCTGCTGCTGCGCGTCCCGGCCTCTCCCTGTACGCTGATTTACACGATCCCAAC
GAATCTTCCAATGCAACCATTTCCGCCGCGCCAGTAGTATACGGCCAGACCAACGCATCGTCGACAGAGACTCAC
AAGCTCAATGCCGCTCTCCAGTTTCAGCCACATATTCGCCGCCCGCCCGTCAAGCAATCAAAGTCTAAGCCAGCG
TTTGCAAAGAAAATCGTCAAAAGTGACACGGCGGACACAGCTCCTGCACCACCGGCGGCCCCTACAGCCACTACT
CAAGCAGCGCCAAAGACTTCACTGGCTGACTGGGCTCCCACTGAGCAGGATGAATGGATGTACGGCACTGGGGAG
AAGCGTCAGCGTGGCGGCCGCAAGAAAAAGAAGAGGCAGCAGCAAGACAGGACCGAGGAGACCAACTGGGACGAG
TTTTATGACCCGAGCAAGCCGACCAATGTCGAGGAATATGTAAAGAGCGATGAGAAGATTACCGAGGTGCTCGAT
TGGAAGGCCCAGCTATACAGACATCGCAAGAGACGTGCCTCGAGCGACATCTCAAGTGATGAAGACGATGCCCCG
TCTATGCAGAGTAGGTTCTTATTTTTTTTATCTTTAGCCCGTGGATATACTCATTCTCTTTATAGCGCAATTCGC
ACCACCCCCGTCAATGGCATTTGCGCCACCGCCCATGTCACCTCCACGACCTGCCTCGCCCCATCGCACCGACAA
TGAACCATACGACCGCCATCCAAACACTACCGAAGCGCCTGTATCAGACTTGAATCCTCCTCCACCTCCTCCTCC
TCCATCACAACCAGCCAGCAATCCTACCCCTCCACCCCCATCTGCCGGAGCCACTATATCACGGGCCCCGGTAAT
GTACACGCAAATGCCTTCTTCAGATAAATCTCCCGGCCATGGCGAGCCTCCTGCCCCCGAGGACGACAACCCCGA
GGAGCCGGAGCGTTCAAAACGACCTGGCCAATCTGGCTTCGCCCTCCGCCTCATGAGCAAGTACGGCTGGACAAG
AGGCACTGGCCTCGGCGCAAACGAGTCTGGCATCGTCAACCCGCTCCGCGTCCACGTCGACAAGCGTCGCAAAAA
GGCTGATGCCGACGGCGGCGGCTGGGCCGAGCCTGCAGGCAAGGGCAAGATTATTGGTGGACACCGCAAGGCAGA
GCAAAGCAAATTTGGCAAAATGAGCGAAGTCATTGTCTTGGGCAATATGCTCGAGAATATGCCAGACCTGCAAAG
CGAAATTGCAAATGGACTTGGCCAAGAAATTGGTGAAGAGTGCGGAGAAAAGGTGAGCTCGCATACAAAGACTCT
TTTCCTCACTTTTGTTTTGGCCTATAAAGCCTTTTCGACACCAACTAACGAGCCACACAGTACGGCCGCGTAGAA
CGTATATACATTGACCAAGAACACCGCCAAGTCTTCATCAAGTTTACCGACCAAGTATCAGCTCTTCGCGTACGT
CATTCCTGCCCTGCTACTTCCTTTTCAGACGCTTACACTTCATCACTTGCAGGCCGTCAACGAGCTCGATGAGCG
CGTCTTTAATGGCAACACCATTGCCCCAAGGTTTTACGATGCAGAAAAGTTTGAGCGAGGCGTCTACACGTCGAA
AAAGTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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