© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauB2|7899 |
| Gene name | |
| Location | Contig_9:251789..252849 |
| Strand | - |
| Gene length (bp) | 1060 |
| Transcript length (bp) | 999 |
| Coding sequence length (bp) | 999 |
| Protein length (aa) | 333 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02144 | Rad1 | Repair protein Rad1/Rec1/Rad17 | 5.4E-70 | 8 | 287 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9QWZ1|RAD1_MOUSE | Cell cycle checkpoint protein RAD1 OS=Mus musculus GN=Rad1 PE=1 SV=1 | 15 | 303 | 4.0E-30 |
| sp|Q5R7X9|RAD1_PONAB | Cell cycle checkpoint protein RAD1 OS=Pongo abelii GN=RAD1 PE=2 SV=1 | 15 | 303 | 4.0E-29 |
| sp|O60671|RAD1_HUMAN | Cell cycle checkpoint protein RAD1 OS=Homo sapiens GN=RAD1 PE=1 SV=1 | 15 | 303 | 4.0E-29 |
| sp|P22193|RAD1_SCHPO | DNA damage checkpoint control protein rad1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rad1 PE=1 SV=2 | 8 | 303 | 3.0E-28 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0000077 | DNA damage checkpoint signaling | Yes |
| GO:0050789 | regulation of biological process | No |
| GO:0010564 | regulation of cell cycle process | No |
| GO:0006950 | response to stress | No |
| GO:0008150 | biological_process | No |
| GO:0010948 | negative regulation of cell cycle process | No |
| GO:0033554 | cellular response to stress | No |
| GO:0045786 | negative regulation of cell cycle | No |
| GO:1901988 | negative regulation of cell cycle phase transition | No |
| GO:0042770 | signal transduction in response to DNA damage | No |
| GO:0007165 | signal transduction | No |
| GO:0035556 | intracellular signal transduction | No |
| GO:0048519 | negative regulation of biological process | No |
| GO:0051726 | regulation of cell cycle | No |
| GO:0051716 | cellular response to stimulus | No |
| GO:1901987 | regulation of cell cycle phase transition | No |
| GO:0065007 | biological regulation | No |
| GO:0031570 | DNA integrity checkpoint signaling | No |
| GO:0048523 | negative regulation of cellular process | No |
| GO:0050794 | regulation of cellular process | No |
| GO:0050896 | response to stimulus | No |
| GO:0009987 | cellular process | No |
| GO:0000075 | cell cycle checkpoint signaling | No |
| GO:0006974 | cellular response to DNA damage stimulus | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 35 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauB2|7899 MAQVAPPVFRAVATSTRPLYQLLRCINFAPRVHVQITDEGIRLTADHARVMQGVAFLDKALFSAYTVNLGPPQGE EAPEQPTFQISLVALLEALQIFGAVDVATRAQKAEQDPYRSNLRNYRPDAFSNQALGISGTCTLLYAQEGDAFKV TIEESGVKTTAGLTTYLPEIPQDIPFDRNDLSFKIIMQSRCLLDCMSEISPMGPIKLTITATKSSPHLLLSSTSD HGTSDVDFARARELLETFSIWRRWSQTFKFDFVKSASEAMRIASKVSLRGDGQGVLSLQFMVDMEDGKRSFLDFR FIPYAPEDAEDGDEDEEQEGLAMEEEDVEFGT* |
| Coding | >OphauB2|7899 ATGGCGCAAGTGGCGCCCCCTGTGTTCCGAGCGGTTGCCACCTCTACGCGTCCCTTGTACCAACTGCTTCGCTGC ATCAACTTTGCGCCACGAGTCCACGTGCAGATAACTGACGAAGGCATCCGTCTCACGGCCGATCACGCACGGGTT ATGCAAGGAGTTGCATTCTTGGACAAGGCTCTCTTCTCGGCCTATACTGTCAATCTCGGGCCGCCGCAAGGCGAA GAAGCGCCCGAGCAGCCCACTTTTCAGATTTCGCTCGTGGCTTTGCTCGAGGCGCTTCAGATATTCGGGGCTGTG GATGTGGCTACTCGGGCGCAAAAGGCTGAACAGGATCCATACCGAAGCAACTTGCGTAACTACCGCCCTGATGCA TTCAGCAACCAGGCGCTTGGAATTTCGGGCACATGCACCCTCTTGTATGCCCAAGAGGGCGATGCATTCAAGGTT ACCATTGAAGAGTCTGGCGTCAAGACGACGGCTGGTCTAACGACGTATCTGCCCGAAATTCCTCAAGACATCCCC TTTGACCGCAACGACTTGAGCTTCAAGATCATCATGCAATCTCGCTGCCTGCTCGACTGCATGTCGGAGATTTCG CCAATGGGCCCTATTAAACTCACTATTACTGCCACAAAGTCTTCCCCACATCTCCTTCTCTCCAGCACCAGCGAC CACGGCACATCTGACGTGGACTTTGCACGCGCTCGCGAACTGCTTGAGACGTTTAGCATTTGGCGCCGTTGGTCA CAGACATTCAAGTTTGACTTTGTCAAGAGCGCAAGCGAGGCAATGCGTATTGCGTCAAAAGTGAGCCTTCGCGGC GATGGCCAGGGCGTGCTGAGTCTGCAGTTCATGGTGGACATGGAGGACGGGAAACGTAGTTTTCTTGACTTTCGC TTCATCCCATATGCTCCTGAGGATGCTGAGGATGGAGACGAGGATGAAGAGCAAGAGGGCCTGGCCATGGAGGAA GAGGATGTTGAGTTTGGGACATGA |
| Transcript | >OphauB2|7899 ATGGCGCAAGTGGCGCCCCCTGTGTTCCGAGCGGTTGCCACCTCTACGCGTCCCTTGTACCAACTGCTTCGCTGC ATCAACTTTGCGCCACGAGTCCACGTGCAGATAACTGACGAAGGCATCCGTCTCACGGCCGATCACGCACGGGTT ATGCAAGGAGTTGCATTCTTGGACAAGGCTCTCTTCTCGGCCTATACTGTCAATCTCGGGCCGCCGCAAGGCGAA GAAGCGCCCGAGCAGCCCACTTTTCAGATTTCGCTCGTGGCTTTGCTCGAGGCGCTTCAGATATTCGGGGCTGTG GATGTGGCTACTCGGGCGCAAAAGGCTGAACAGGATCCATACCGAAGCAACTTGCGTAACTACCGCCCTGATGCA TTCAGCAACCAGGCGCTTGGAATTTCGGGCACATGCACCCTCTTGTATGCCCAAGAGGGCGATGCATTCAAGGTT ACCATTGAAGAGTCTGGCGTCAAGACGACGGCTGGTCTAACGACGTATCTGCCCGAAATTCCTCAAGACATCCCC TTTGACCGCAACGACTTGAGCTTCAAGATCATCATGCAATCTCGCTGCCTGCTCGACTGCATGTCGGAGATTTCG CCAATGGGCCCTATTAAACTCACTATTACTGCCACAAAGTCTTCCCCACATCTCCTTCTCTCCAGCACCAGCGAC CACGGCACATCTGACGTGGACTTTGCACGCGCTCGCGAACTGCTTGAGACGTTTAGCATTTGGCGCCGTTGGTCA CAGACATTCAAGTTTGACTTTGTCAAGAGCGCAAGCGAGGCAATGCGTATTGCGTCAAAAGTGAGCCTTCGCGGC GATGGCCAGGGCGTGCTGAGTCTGCAGTTCATGGTGGACATGGAGGACGGGAAACGTAGTTTTCTTGACTTTCGC TTCATCCCATATGCTCCTGAGGATGCTGAGGATGGAGACGAGGATGAAGAGCAAGAGGGCCTGGCCATGGAGGAA GAGGATGTTGAGTTTGGGACATGA |
| Gene | >OphauB2|7899 ATGGCGCAAGTGGCGCCCCCTGTGTTCCGAGCGGTTGCCACCTCTACGCGTCCCTTGTACCAACTGCTTCGCTGC ATCAACTTTGCGCCACGAGTCCACGTGCAGATAACTGACGAAGGCATCCGTCTCACGGCCGATCACGCACGGGTT ATGCAAGGTAAATAAATGTTGGTTTGTTGTGGGGGTATTGTGGCCGACTGCTAACCTTGGTTGCGTAGGAGTTGC ATTCTTGGACAAGGCTCTCTTCTCGGCCTATACTGTCAATCTCGGGCCGCCGCAAGGCGAAGAAGCGCCCGAGCA GCCCACTTTTCAGATTTCGCTCGTGGCTTTGCTCGAGGCGCTTCAGATATTCGGGGCTGTGGATGTGGCTACTCG GGCGCAAAAGGCTGAACAGGATCCATACCGAAGCAACTTGCGTAACTACCGCCCTGATGCATTCAGCAACCAGGC GCTTGGAATTTCGGGCACATGCACCCTCTTGTATGCCCAAGAGGGCGATGCATTCAAGGTTACCATTGAAGAGTC TGGCGTCAAGACGACGGCTGGTCTAACGACGTATCTGCCCGAAATTCCTCAAGACATCCCCTTTGACCGCAACGA CTTGAGCTTCAAGATCATCATGCAATCTCGCTGCCTGCTCGACTGCATGTCGGAGATTTCGCCAATGGGCCCTAT TAAACTCACTATTACTGCCACAAAGTCTTCCCCACATCTCCTTCTCTCCAGCACCAGCGACCACGGCACATCTGA CGTGGACTTTGCACGCGCTCGCGAACTGCTTGAGACGTTTAGCATTTGGCGCCGTTGGTCACAGACATTCAAGTT TGACTTTGTCAAGAGCGCAAGCGAGGCAATGCGTATTGCGTCAAAAGTGAGCCTTCGCGGCGATGGCCAGGGCGT GCTGAGTCTGCAGTTCATGGTGGACATGGAGGACGGGAAACGTAGTTTTCTTGACTTTCGCTTCATCCCATATGC TCCTGAGGATGCTGAGGATGGAGACGAGGATGAAGAGCAAGAGGGCCTGGCCATGGAGGAAGAGGATGTTGAGTT TGGGACATGA |