Fungal Genomics

at Utrecht University

General Properties

Protein IDOphauB2|7856
Gene name
LocationContig_9:133922..134889
Strand-
Gene length (bp)967
Transcript length (bp)912
Coding sequence length (bp)912
Protein length (aa) 304

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01370 Epimerase NAD dependent epimerase/dehydratase family 2.2E-11 42 161
PF04321 RmlD_sub_bind RmlD substrate binding domain 2.3E-10 18 168
PF02719 Polysacc_synt_2 Polysaccharide biosynthesis protein 3.3E-06 44 113

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q9LQ04|RMLCD_ARATH Bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase OS=Arabidopsis thaliana GN=NRS/ER PE=1 SV=1 17 272 4.0E-98
sp|Q9SYM5|RHM1_ARATH Trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 OS=Arabidopsis thaliana GN=RHM1 PE=1 SV=1 16 272 8.0E-91
sp|Q9LH76|RHM3_ARATH Trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM3 OS=Arabidopsis thaliana GN=RHM3 PE=1 SV=1 16 272 6.0E-81
sp|Q9LPG6|RHM2_ARATH Trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM2 OS=Arabidopsis thaliana GN=RHM2 PE=1 SV=1 9 272 7.0E-81
sp|Q5UPS5|YL780_MIMIV Uncharacterized protein L780 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_L780 PE=4 SV=1 16 298 4.0E-63
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Swissprot ID Swissprot Description Start End E-value
sp|Q9LQ04|RMLCD_ARATH Bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase OS=Arabidopsis thaliana GN=NRS/ER PE=1 SV=1 17 272 4.0E-98
sp|Q9SYM5|RHM1_ARATH Trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 OS=Arabidopsis thaliana GN=RHM1 PE=1 SV=1 16 272 8.0E-91
sp|Q9LH76|RHM3_ARATH Trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM3 OS=Arabidopsis thaliana GN=RHM3 PE=1 SV=1 16 272 6.0E-81
sp|Q9LPG6|RHM2_ARATH Trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM2 OS=Arabidopsis thaliana GN=RHM2 PE=1 SV=1 9 272 7.0E-81
sp|Q5UPS5|YL780_MIMIV Uncharacterized protein L780 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_L780 PE=4 SV=1 16 298 4.0E-63
sp|Q9ZV36|UXS6_ARATH UDP-glucuronic acid decarboxylase 6 OS=Arabidopsis thaliana GN=UXS6 PE=2 SV=1 84 244 1.0E-06
sp|Q9FIE8|UXS3_ARATH UDP-glucuronic acid decarboxylase 3 OS=Arabidopsis thaliana GN=UXS3 PE=1 SV=1 84 244 2.0E-06
sp|Q9SN95|UXS5_ARATH UDP-glucuronic acid decarboxylase 5 OS=Arabidopsis thaliana GN=UXS5 PE=2 SV=1 84 244 2.0E-06
sp|Q8VZC0|UXS1_ARATH UDP-glucuronic acid decarboxylase 1 OS=Arabidopsis thaliana GN=UXS1 PE=1 SV=1 84 247 8.0E-06
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GO

(None)

SignalP

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SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 14 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >OphauB2|7856
MSDSSNARNKGDMAPRFLVWSTNGWIAGKLHELLQKQCKQVFLTSTRMEDRETVMEQLASVKPTHVINAAGCTGR
PNVDWCESNKEQTIRSNVIGTLNLADCCFQAGIHCTIFATGCIYNYDDAHPIGGPSFTEDDEPNFDGSFYSHSKG
HVQELLKSYQNCLVLRVRMPTSDDLSPRSFVTKILSYKHIVNIPNSHSILHDLLPAALILAENHETGILNFVNPG
AISHNEVLDLFKEIVRPSVTYQNFSIEEQAKILKAGRSNCELDTHKLVSTLEKYGLHIPEIHQAYRQCFKRMKAM
GIE*
Coding >OphauB2|7856
ATGTCGGACTCCAGCAATGCTCGAAACAAGGGCGACATGGCTCCTCGTTTCCTCGTATGGAGCACTAATGGTTGG
ATCGCAGGAAAGCTGCACGAACTGCTGCAGAAACAGTGCAAGCAAGTGTTTCTTACATCAACAAGAATGGAAGAC
CGCGAGACAGTCATGGAGCAGCTCGCCAGCGTCAAGCCCACACATGTCATCAATGCCGCGGGATGTACAGGTAGG
CCCAATGTCGACTGGTGCGAGTCAAACAAGGAGCAAACCATACGATCCAATGTGATTGGGACTCTCAACTTGGCA
GACTGCTGCTTCCAGGCAGGCATTCACTGCACCATTTTTGCCACTGGATGCATCTATAACTATGACGATGCTCAT
CCCATTGGCGGCCCTTCCTTCACTGAAGATGACGAGCCAAACTTTGATGGCAGCTTTTATTCCCATTCAAAGGGC
CATGTCCAGGAGTTGCTCAAGAGCTATCAAAACTGTTTAGTCCTGCGCGTTCGCATGCCCACGAGCGACGACCTC
AGTCCACGTAGCTTTGTGACCAAGATATTGAGCTACAAACACATTGTCAACATTCCAAATAGCCATTCAATCCTC
CATGACTTGCTTCCCGCTGCGCTGATACTGGCCGAGAATCACGAGACTGGCATACTCAACTTTGTCAATCCCGGG
GCCATCTCTCACAACGAGGTACTCGACCTCTTCAAGGAAATTGTTCGACCTAGTGTCACGTATCAGAATTTTAGT
ATCGAAGAGCAAGCCAAGATCCTCAAGGCCGGACGAAGCAACTGCGAGCTGGACACGCACAAATTGGTGTCCACG
CTCGAGAAATATGGTCTTCACATTCCAGAAATCCATCAAGCGTACCGTCAGTGTTTTAAGAGGATGAAGGCAATG
GGGATTGAGTAG
Transcript >OphauB2|7856
ATGTCGGACTCCAGCAATGCTCGAAACAAGGGCGACATGGCTCCTCGTTTCCTCGTATGGAGCACTAATGGTTGG
ATCGCAGGAAAGCTGCACGAACTGCTGCAGAAACAGTGCAAGCAAGTGTTTCTTACATCAACAAGAATGGAAGAC
CGCGAGACAGTCATGGAGCAGCTCGCCAGCGTCAAGCCCACACATGTCATCAATGCCGCGGGATGTACAGGTAGG
CCCAATGTCGACTGGTGCGAGTCAAACAAGGAGCAAACCATACGATCCAATGTGATTGGGACTCTCAACTTGGCA
GACTGCTGCTTCCAGGCAGGCATTCACTGCACCATTTTTGCCACTGGATGCATCTATAACTATGACGATGCTCAT
CCCATTGGCGGCCCTTCCTTCACTGAAGATGACGAGCCAAACTTTGATGGCAGCTTTTATTCCCATTCAAAGGGC
CATGTCCAGGAGTTGCTCAAGAGCTATCAAAACTGTTTAGTCCTGCGCGTTCGCATGCCCACGAGCGACGACCTC
AGTCCACGTAGCTTTGTGACCAAGATATTGAGCTACAAACACATTGTCAACATTCCAAATAGCCATTCAATCCTC
CATGACTTGCTTCCCGCTGCGCTGATACTGGCCGAGAATCACGAGACTGGCATACTCAACTTTGTCAATCCCGGG
GCCATCTCTCACAACGAGGTACTCGACCTCTTCAAGGAAATTGTTCGACCTAGTGTCACGTATCAGAATTTTAGT
ATCGAAGAGCAAGCCAAGATCCTCAAGGCCGGACGAAGCAACTGCGAGCTGGACACGCACAAATTGGTGTCCACG
CTCGAGAAATATGGTCTTCACATTCCAGAAATCCATCAAGCGTACCGTCAGTGTTTTAAGAGGATGAAGGCAATG
GGGATTGAGTAG
Gene >OphauB2|7856
ATGTCGGACTCCAGCAATGCTCGAAACAAGGGCGACATGGCTCCTCGTTTCCTCGTATGGAGCACTAATGGTTGG
ATCGCAGGAAAGCTGCACGAACTGCTGCAGAAACAGTGCAAGCAAGTGTTTCTTACATCAACAAGAATGGAAGAC
CGCGAGACAGTCATGGAGCAGCTCGCCAGCGTCAAGCCCACACATGTCATCAATGCCGCGGGATGTACAGGTAGG
CCCAATGTCGACTGGTGCGAGTCAAACAAGGAGCAAACCATACGATCCAATGTGATTGGGACTCTCAACTTGGCA
GACTGCTGCTTCCAGGCAGGCATTCACTGCACCATTTTTGCCACTGGATGCATCTATAACTATGACGATGCTCAT
CCCATTGGCGGCCCTTCCTTCACTGAAGATGACGAGCCAAACTTTGATGGCAGCTTTTATTCCCATTCAAAGGGC
CATGTCCAGGAGGTATGTGAAGCCATTGACTTGATGCAACGATTGCATGTTAACATGGTGCTCACAGTTGCTCAA
GAGCTATCAAAACTGTTTAGTCCTGCGCGTTCGCATGCCCACGAGCGACGACCTCAGTCCACGTAGCTTTGTGAC
CAAGATATTGAGCTACAAACACATTGTCAACATTCCAAATAGCCATTCAATCCTCCATGACTTGCTTCCCGCTGC
GCTGATACTGGCCGAGAATCACGAGACTGGCATACTCAACTTTGTCAATCCCGGGGCCATCTCTCACAACGAGGT
ACTCGACCTCTTCAAGGAAATTGTTCGACCTAGTGTCACGTATCAGAATTTTAGTATCGAAGAGCAAGCCAAGAT
CCTCAAGGCCGGACGAAGCAACTGCGAGCTGGACACGCACAAATTGGTGTCCACGCTCGAGAAATATGGTCTTCA
CATTCCAGAAATCCATCAAGCGTACCGTCAGTGTTTTAAGAGGATGAAGGCAATGGGGATTGAGTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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