Fungal Genomics

at Utrecht University

General Properties

Protein IDOphauB2|7834
Gene name
LocationContig_9:71727..73433
Strand-
Gene length (bp)1706
Transcript length (bp)1650
Coding sequence length (bp)1650
Protein length (aa) 550

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF07766 LETM1_RBD LETM1-like, RBD 3.5E-89 181 410

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|O13920|MDM28_SCHPO LETM1 domain-containing protein mdm28, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mdm28 PE=2 SV=3 139 462 2.0E-125
sp|Q06493|YLH47_YEAST LETM1 domain-containing protein YLH47, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YLH47 PE=1 SV=1 117 462 2.0E-100
sp|Q5ZK33|LETM1_CHICK LETM1 and EF-hand domain-containing protein 1, mitochondrial OS=Gallus gallus GN=LETM1 PE=2 SV=1 135 531 1.0E-84
sp|Q08179|MDM38_YEAST Mitochondrial distribution and morphology protein 38 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MDM38 PE=1 SV=1 140 452 2.0E-84
sp|Q0VCA3|LETM1_BOVIN LETM1 and EF-hand domain-containing protein 1, mitochondrial OS=Bos taurus GN=LETM1 PE=2 SV=1 143 490 8.0E-84
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Swissprot ID Swissprot Description Start End E-value
sp|O13920|MDM28_SCHPO LETM1 domain-containing protein mdm28, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mdm28 PE=2 SV=3 139 462 2.0E-125
sp|Q06493|YLH47_YEAST LETM1 domain-containing protein YLH47, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YLH47 PE=1 SV=1 117 462 2.0E-100
sp|Q5ZK33|LETM1_CHICK LETM1 and EF-hand domain-containing protein 1, mitochondrial OS=Gallus gallus GN=LETM1 PE=2 SV=1 135 531 1.0E-84
sp|Q08179|MDM38_YEAST Mitochondrial distribution and morphology protein 38 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MDM38 PE=1 SV=1 140 452 2.0E-84
sp|Q0VCA3|LETM1_BOVIN LETM1 and EF-hand domain-containing protein 1, mitochondrial OS=Bos taurus GN=LETM1 PE=2 SV=1 143 490 8.0E-84
sp|Q0VA06|LETM1_XENTR LETM1 and EF-hand domain-containing protein 1, mitochondrial OS=Xenopus tropicalis GN=letm1 PE=2 SV=1 135 549 1.0E-79
sp|Q1LY46|LETM1_DANRE LETM1 and EF-hand domain-containing protein 1, mitochondrial OS=Danio rerio GN=letm1 PE=3 SV=2 134 476 2.0E-79
sp|O95202|LETM1_HUMAN LETM1 and EF-hand domain-containing protein 1, mitochondrial OS=Homo sapiens GN=LETM1 PE=1 SV=1 140 476 4.0E-73
sp|Q9Z2I0|LETM1_MOUSE LETM1 and EF-hand domain-containing protein 1, mitochondrial OS=Mus musculus GN=Letm1 PE=1 SV=1 142 472 6.0E-73
sp|Q5XIN6|LETM1_RAT LETM1 and EF-hand domain-containing protein 1, mitochondrial OS=Rattus norvegicus GN=Letm1 PE=1 SV=1 140 472 4.0E-72
sp|P91927|A60DA_DROME LETM1 and EF-hand domain-containing protein anon-60Da, mitochondrial OS=Drosophila melanogaster GN=Letm1 PE=2 SV=2 143 454 1.0E-70
sp|Q7TNU7|LETM2_MOUSE LETM1 domain-containing protein LETM2, mitochondrial OS=Mus musculus GN=Letm2 PE=1 SV=1 115 410 4.0E-57
sp|Q28DA8|LETM2_XENTR LETM1 domain-containing protein LETM2, mitochondrial OS=Xenopus tropicalis GN=letm2 PE=2 SV=1 142 402 4.0E-56
sp|Q2VYF4|LETM2_HUMAN LETM1 domain-containing protein LETM2, mitochondrial OS=Homo sapiens GN=LETM2 PE=2 SV=2 134 410 1.0E-55
sp|Q5PQQ5|LETM2_RAT LETM1 domain-containing protein LETM2, mitochondrial OS=Rattus norvegicus GN=Letm2 PE=2 SV=1 127 410 2.0E-55
sp|A3KN46|LTMD1_BOVIN LETM1 domain-containing protein 1 OS=Bos taurus GN=LETMD1 PE=2 SV=1 179 393 2.0E-11
sp|Q6P1Q0|LTMD1_HUMAN LETM1 domain-containing protein 1 OS=Homo sapiens GN=LETMD1 PE=1 SV=1 179 411 5.0E-09
sp|Q924L1|LTMD1_MOUSE LETM1 domain-containing protein 1 OS=Mus musculus GN=Letmd1 PE=1 SV=1 169 411 9.0E-08
sp|Q28EM8|LTMD1_XENTR LETM1 domain-containing protein 1 OS=Xenopus tropicalis GN=letmd1 PE=2 SV=1 106 396 2.0E-06
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GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 59 0.45

Transmembrane Domains

Domain # Start End Length
1 196 218 22

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >OphauB2|7834
MSTSASVAQRAITRNSLLGNGRALSRGISPALIARHSLGRNARVPAIALVVPWRFVSTEPHRPDAQNAATPPPGF
NVEQAKKPLTKENNGTTVKVADKTNKDSASTTTTKADATLTELAAAKGDAADKSELAKVEKEEKKLTLWQKVKKE
ARHYWDGSKLMAAEVRISWRLALKMAAGYDLTRREHRQLQRTVRDLGRLVPFSVFIIVPLGEALLPLALKLFPNM
LPSTFEGQKSKDAKASMLRSTRKEVSSFLRQTLKETGLPLSAATTQKEEFANFFRKVRSTGETPTAEDVIKVCKI
FRDDLTLDNLSRPQLVSMCRYMNLNTFGTDMMLRYQIRHRMRQIKRDDKAISFEGVDSLTVAELQMACAARGIRT
HSVSPARMRADLQTWLDLRLREGVPSTLLVLSNAYMYGQGSGEGQGQIDALIGTLSSIPEELFHEIELEMHNAEG
AATNKQRLEVLKEQQELIDEENEQNEESQSTGMATPRDVEDIDEKDERQAGSETNEASQAQVASSDSNQTPASEM
AKAEVEAAQVDASKKAGEGGNGQK*
Coding >OphauB2|7834
ATGAGCACTTCGGCGTCTGTTGCCCAAAGGGCAATTACCCGAAACTCTCTTCTGGGCAATGGCCGAGCACTGTCT
CGTGGCATTTCGCCTGCCCTCATTGCTCGGCACTCGCTCGGCCGTAATGCTCGCGTCCCCGCGATTGCGCTTGTC
GTCCCCTGGCGCTTCGTGAGCACCGAACCCCATCGTCCGGATGCTCAAAACGCAGCGACTCCACCACCAGGCTTC
AATGTCGAGCAGGCCAAGAAGCCCTTGACCAAGGAAAACAACGGCACCACGGTCAAGGTGGCTGACAAGACTAAC
AAGGACTCAGCCTCGACGACTACGACCAAGGCTGATGCAACGTTGACGGAGCTGGCGGCCGCCAAGGGCGATGCA
GCCGACAAGAGCGAACTGGCCAAGGTGGAAAAAGAAGAGAAAAAACTGACCTTGTGGCAAAAGGTGAAGAAGGAG
GCTCGTCACTATTGGGACGGCAGCAAACTCATGGCTGCCGAGGTGCGCATTAGCTGGCGACTTGCGCTCAAAATG
GCGGCTGGCTATGACCTGACGCGCCGGGAACACCGACAGCTGCAGCGGACCGTCCGCGATTTGGGCCGGCTGGTG
CCCTTTTCTGTCTTTATTATTGTACCTCTGGGCGAGGCGTTGCTGCCGCTTGCTCTCAAACTCTTTCCCAATATG
CTACCCAGCACGTTTGAAGGGCAAAAATCCAAGGATGCCAAGGCTAGCATGCTGCGATCGACACGCAAGGAAGTC
AGCTCCTTTCTGAGACAGACTCTCAAGGAGACGGGCTTGCCGCTGAGTGCAGCCACGACGCAAAAAGAGGAATTT
GCAAACTTTTTCCGCAAGGTGCGCTCGACGGGTGAGACGCCGACAGCCGAGGATGTCATCAAGGTGTGCAAGATA
TTTCGCGACGACTTGACGCTGGACAATTTGTCGCGGCCGCAGCTCGTGTCCATGTGCCGATATATGAACCTCAAT
ACCTTTGGCACCGACATGATGCTTCGCTATCAGATTCGCCACCGCATGCGCCAAATCAAGCGCGATGACAAGGCC
ATTAGCTTTGAAGGCGTCGACAGCCTGACGGTGGCTGAGCTGCAGATGGCTTGTGCAGCACGGGGCATCCGCACT
CACAGCGTCTCTCCTGCGCGCATGCGAGCCGACCTGCAGACGTGGCTTGATCTGCGATTGCGCGAGGGCGTGCCT
TCGACGCTTCTCGTGCTGAGCAACGCCTACATGTACGGACAGGGATCTGGCGAGGGCCAGGGACAAATTGATGCC
CTTATTGGCACCCTCTCGTCGATTCCCGAAGAGTTATTCCACGAAATCGAGCTCGAAATGCACAATGCTGAGGGA
GCGGCGACCAATAAGCAGCGTCTAGAAGTGCTCAAGGAACAGCAGGAGCTGATTGACGAGGAGAATGAACAAAAC
GAGGAGAGCCAGAGCACGGGCATGGCAACGCCACGTGACGTTGAGGACATTGATGAAAAGGACGAGCGACAAGCA
GGTTCCGAGACTAACGAAGCATCTCAAGCGCAGGTGGCAAGCAGCGACAGCAACCAGACACCGGCGAGCGAAATG
GCAAAGGCAGAAGTCGAGGCAGCACAGGTGGATGCAAGCAAGAAGGCGGGAGAGGGCGGCAATGGACAAAAGTAA
Transcript >OphauB2|7834
ATGAGCACTTCGGCGTCTGTTGCCCAAAGGGCAATTACCCGAAACTCTCTTCTGGGCAATGGCCGAGCACTGTCT
CGTGGCATTTCGCCTGCCCTCATTGCTCGGCACTCGCTCGGCCGTAATGCTCGCGTCCCCGCGATTGCGCTTGTC
GTCCCCTGGCGCTTCGTGAGCACCGAACCCCATCGTCCGGATGCTCAAAACGCAGCGACTCCACCACCAGGCTTC
AATGTCGAGCAGGCCAAGAAGCCCTTGACCAAGGAAAACAACGGCACCACGGTCAAGGTGGCTGACAAGACTAAC
AAGGACTCAGCCTCGACGACTACGACCAAGGCTGATGCAACGTTGACGGAGCTGGCGGCCGCCAAGGGCGATGCA
GCCGACAAGAGCGAACTGGCCAAGGTGGAAAAAGAAGAGAAAAAACTGACCTTGTGGCAAAAGGTGAAGAAGGAG
GCTCGTCACTATTGGGACGGCAGCAAACTCATGGCTGCCGAGGTGCGCATTAGCTGGCGACTTGCGCTCAAAATG
GCGGCTGGCTATGACCTGACGCGCCGGGAACACCGACAGCTGCAGCGGACCGTCCGCGATTTGGGCCGGCTGGTG
CCCTTTTCTGTCTTTATTATTGTACCTCTGGGCGAGGCGTTGCTGCCGCTTGCTCTCAAACTCTTTCCCAATATG
CTACCCAGCACGTTTGAAGGGCAAAAATCCAAGGATGCCAAGGCTAGCATGCTGCGATCGACACGCAAGGAAGTC
AGCTCCTTTCTGAGACAGACTCTCAAGGAGACGGGCTTGCCGCTGAGTGCAGCCACGACGCAAAAAGAGGAATTT
GCAAACTTTTTCCGCAAGGTGCGCTCGACGGGTGAGACGCCGACAGCCGAGGATGTCATCAAGGTGTGCAAGATA
TTTCGCGACGACTTGACGCTGGACAATTTGTCGCGGCCGCAGCTCGTGTCCATGTGCCGATATATGAACCTCAAT
ACCTTTGGCACCGACATGATGCTTCGCTATCAGATTCGCCACCGCATGCGCCAAATCAAGCGCGATGACAAGGCC
ATTAGCTTTGAAGGCGTCGACAGCCTGACGGTGGCTGAGCTGCAGATGGCTTGTGCAGCACGGGGCATCCGCACT
CACAGCGTCTCTCCTGCGCGCATGCGAGCCGACCTGCAGACGTGGCTTGATCTGCGATTGCGCGAGGGCGTGCCT
TCGACGCTTCTCGTGCTGAGCAACGCCTACATGTACGGACAGGGATCTGGCGAGGGCCAGGGACAAATTGATGCC
CTTATTGGCACCCTCTCGTCGATTCCCGAAGAGTTATTCCACGAAATCGAGCTCGAAATGCACAATGCTGAGGGA
GCGGCGACCAATAAGCAGCGTCTAGAAGTGCTCAAGGAACAGCAGGAGCTGATTGACGAGGAGAATGAACAAAAC
GAGGAGAGCCAGAGCACGGGCATGGCAACGCCACGTGACGTTGAGGACATTGATGAAAAGGACGAGCGACAAGCA
GGTTCCGAGACTAACGAAGCATCTCAAGCGCAGGTGGCAAGCAGCGACAGCAACCAGACACCGGCGAGCGAAATG
GCAAAGGCAGAAGTCGAGGCAGCACAGGTGGATGCAAGCAAGAAGGCGGGAGAGGGCGGCAATGGACAAAAGTAA
Gene >OphauB2|7834
ATGAGCACTTCGGCGTCTGTTGCCCAAAGGGCAATTACCCGAAACTCTCTTCTGGGCAATGGCAAGTTTTTTTTT
CTCATGCGCGATGCGATGCGTGACTGACCAAGGGCGCTACAGGCCGAGCACTGTCTCGTGGCATTTCGCCTGCCC
TCATTGCTCGGCACTCGCTCGGCCGTAATGCTCGCGTCCCCGCGATTGCGCTTGTCGTCCCCTGGCGCTTCGTGA
GCACCGAACCCCATCGTCCGGATGCTCAAAACGCAGCGACTCCACCACCAGGCTTCAATGTCGAGCAGGCCAAGA
AGCCCTTGACCAAGGAAAACAACGGCACCACGGTCAAGGTGGCTGACAAGACTAACAAGGACTCAGCCTCGACGA
CTACGACCAAGGCTGATGCAACGTTGACGGAGCTGGCGGCCGCCAAGGGCGATGCAGCCGACAAGAGCGAACTGG
CCAAGGTGGAAAAAGAAGAGAAAAAACTGACCTTGTGGCAAAAGGTGAAGAAGGAGGCTCGTCACTATTGGGACG
GCAGCAAACTCATGGCTGCCGAGGTGCGCATTAGCTGGCGACTTGCGCTCAAAATGGCGGCTGGCTATGACCTGA
CGCGCCGGGAACACCGACAGCTGCAGCGGACCGTCCGCGATTTGGGCCGGCTGGTGCCCTTTTCTGTCTTTATTA
TTGTACCTCTGGGCGAGGCGTTGCTGCCGCTTGCTCTCAAACTCTTTCCCAATATGCTACCCAGCACGTTTGAAG
GGCAAAAATCCAAGGATGCCAAGGCTAGCATGCTGCGATCGACACGCAAGGAAGTCAGCTCCTTTCTGAGACAGA
CTCTCAAGGAGACGGGCTTGCCGCTGAGTGCAGCCACGACGCAAAAAGAGGAATTTGCAAACTTTTTCCGCAAGG
TGCGCTCGACGGGTGAGACGCCGACAGCCGAGGATGTCATCAAGGTGTGCAAGATATTTCGCGACGACTTGACGC
TGGACAATTTGTCGCGGCCGCAGCTCGTGTCCATGTGCCGATATATGAACCTCAATACCTTTGGCACCGACATGA
TGCTTCGCTATCAGATTCGCCACCGCATGCGCCAAATCAAGCGCGATGACAAGGCCATTAGCTTTGAAGGCGTCG
ACAGCCTGACGGTGGCTGAGCTGCAGATGGCTTGTGCAGCACGGGGCATCCGCACTCACAGCGTCTCTCCTGCGC
GCATGCGAGCCGACCTGCAGACGTGGCTTGATCTGCGATTGCGCGAGGGCGTGCCTTCGACGCTTCTCGTGCTGA
GCAACGCCTACATGTACGGACAGGGATCTGGCGAGGGCCAGGGACAAATTGATGCCCTTATTGGCACCCTCTCGT
CGATTCCCGAAGAGTTATTCCACGAAATCGAGCTCGAAATGCACAATGCTGAGGGAGCGGCGACCAATAAGCAGC
GTCTAGAAGTGCTCAAGGAACAGCAGGAGCTGATTGACGAGGAGAATGAACAAAACGAGGAGAGCCAGAGCACGG
GCATGGCAACGCCACGTGACGTTGAGGACATTGATGAAAAGGACGAGCGACAAGCAGGTTCCGAGACTAACGAAG
CATCTCAAGCGCAGGTGGCAAGCAGCGACAGCAACCAGACACCGGCGAGCGAAATGGCAAAGGCAGAAGTCGAGG
CAGCACAGGTGGATGCAAGCAAGAAGGCGGGAGAGGGCGGCAATGGACAAAAGTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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