Fungal Genomics

at Utrecht University

General Properties

Protein ID	OphauB2\|7829
Gene name
Location	Contig_9:58533..59317
Strand	-
Gene length (bp)	784
Transcript length (bp)	690
Coding sequence length (bp)	690
Protein length (aa)	230

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF00857	Isochorismatase	Isochorismatase family	1.4E-21	10	214

Swissprot hits

Swissprot ID	Swissprot Description	Start	End	E-value
sp\|P53184\|PNC1_YEAST	Nicotinamidase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PNC1 PE=1 SV=1	10	213	6.0E-34
sp\|P21369\|PNCA_ECOLI	Pyrazinamidase/nicotinamidase OS=Escherichia coli (strain K12) GN=pncA PE=3 SV=1	10	194	7.0E-33
sp\|Q9USS0\|PNC1_SCHPO	Nicotinamidase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pnc1 PE=3 SV=2	7	226	5.0E-32

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 12	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>OphauB2\|7829 MNLNAIFRPALIVVDYQNDFLPPNGSLAVPDGLSIAPVINSLLSLPFDVKVATLDWHPRNHISFAANHAEASPFT STAVVTHPDDPSRSYETVLWPIHCVQDTHGAEHHPLLDTDKLDVTLRKGMNPAVEMYSAFYDDFHIEDSGAAALL AHRQISHVFVVGVAADYCVAATARSAVDEGYQTYIVDQGTRPVNKASWPIEKERLLASGVGIITMDGPEVARVRA LSSN*
Coding	>OphauB2\|7829 ATGAATCTCAACGCCATTTTCCGTCCCGCGCTCATCGTCGTCGACTACCAAAACGACTTTCTCCCACCTAATGGC TCCCTCGCCGTCCCTGACGGGCTCTCCATTGCTCCCGTCATCAACTCTCTCCTCTCTCTCCCCTTTGACGTCAAA GTGGCCACGCTCGACTGGCACCCGCGCAACCACATCTCCTTTGCCGCCAACCACGCCGAAGCGTCGCCTTTTACT TCCACGGCTGTGGTGACGCACCCAGACGACCCAAGCCGCAGCTACGAAACGGTGCTGTGGCCCATTCACTGCGTG CAAGACACGCATGGCGCTGAGCACCACCCTTTACTTGACACGGATAAACTCGACGTGACGCTACGCAAGGGCATG AATCCAGCCGTGGAAATGTATTCCGCCTTTTACGACGACTTTCACATTGAGGACTCGGGCGCCGCGGCGCTGCTT GCTCACAGACAAATTTCCCATGTTTTTGTCGTTGGCGTCGCGGCCGATTACTGCGTGGCTGCCACGGCGCGCAGT GCGGTGGACGAGGGCTATCAGACGTACATTGTAGATCAAGGCACGCGCCCAGTCAATAAGGCGTCGTGGCCGATA GAAAAGGAGAGGCTGTTGGCAAGTGGTGTTGGCATTATTACCATGGATGGACCAGAGGTTGCCCGCGTGCGTGCC TTGTCTAGCAATTGA
Transcript	>OphauB2\|7829 ATGAATCTCAACGCCATTTTCCGTCCCGCGCTCATCGTCGTCGACTACCAAAACGACTTTCTCCCACCTAATGGC TCCCTCGCCGTCCCTGACGGGCTCTCCATTGCTCCCGTCATCAACTCTCTCCTCTCTCTCCCCTTTGACGTCAAA GTGGCCACGCTCGACTGGCACCCGCGCAACCACATCTCCTTTGCCGCCAACCACGCCGAAGCGTCGCCTTTTACT TCCACGGCTGTGGTGACGCACCCAGACGACCCAAGCCGCAGCTACGAAACGGTGCTGTGGCCCATTCACTGCGTG CAAGACACGCATGGCGCTGAGCACCACCCTTTACTTGACACGGATAAACTCGACGTGACGCTACGCAAGGGCATG AATCCAGCCGTGGAAATGTATTCCGCCTTTTACGACGACTTTCACATTGAGGACTCGGGCGCCGCGGCGCTGCTT GCTCACAGACAAATTTCCCATGTTTTTGTCGTTGGCGTCGCGGCCGATTACTGCGTGGCTGCCACGGCGCGCAGT GCGGTGGACGAGGGCTATCAGACGTACATTGTAGATCAAGGCACGCGCCCAGTCAATAAGGCGTCGTGGCCGATA GAAAAGGAGAGGCTGTTGGCAAGTGGTGTTGGCATTATTACCATGGATGGACCAGAGGTTGCCCGCGTGCGTGCC TTGTCTAGCAATTGA
Gene	>OphauB2\|7829 ATGAATCTCAACGCCATTTTCCGTCCCGCGCTCATCGTCGTCGACTACCAAAACGACTTTCTCCCACCTGTACGT GCATCCATCATGTTTGCTTCGCCCACAAGCCTCACAAGCCTCCCCCCCTCCCATCTTGTTGATTGGAAGAAAAAA ACCCTGCTTCTAGAATGGCTCCCTCGCCGTCCCTGACGGGCTCTCCATTGCTCCCGTCATCAACTCTCTCCTCTC TCTCCCCTTTGACGTCAAAGTGGCCACGCTCGACTGGCACCCGCGCAACCACATCTCCTTTGCCGCCAACCACGC CGAAGCGTCGCCTTTTACTTCCACGGCTGTGGTGACGCACCCAGACGACCCAAGCCGCAGCTACGAAACGGTGCT GTGGCCCATTCACTGCGTGCAAGACACGCATGGCGCTGAGCACCACCCTTTACTTGACACGGATAAACTCGACGT GACGCTACGCAAGGGCATGAATCCAGCCGTGGAAATGTATTCCGCCTTTTACGACGACTTTCACATTGAGGACTC GGGCGCCGCGGCGCTGCTTGCTCACAGACAAATTTCCCATGTTTTTGTCGTTGGCGTCGCGGCCGATTACTGCGT GGCTGCCACGGCGCGCAGTGCGGTGGACGAGGGCTATCAGACGTACATTGTAGATCAAGGCACGCGCCCAGTCAA TAAGGCGTCGTGGCCGATAGAAAAGGAGAGGCTGTTGGCAAGTGGTGTTGGCATTATTACCATGGATGGACCAGA GGTTGCCCGCGTGCGTGCCTTGTCTAGCAATTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail