Fungal Genomics

at Utrecht University

General Properties

Protein ID	OphauB2\|7810
Gene name
Location	Contig_9:6799..8248
Strand	+
Gene length (bp)	1449
Transcript length (bp)	1242
Coding sequence length (bp)	1242
Protein length (aa)	414

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF04652	Vta1	Vta1 like	7.2E-46	59	203
PF18097	Vta1_C	Vta1 C-terminal domain	7.8E-16	375	410

Swissprot hits

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Swissprot ID	Swissprot Description	Start	End	E-value
sp\|O13703\|VTA1_SCHPO	Vacuolar protein sorting-associated protein vts1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vts1 PE=3 SV=2	56	410	3.0E-21
sp\|Q32L63\|VTA1_BOVIN	Vacuolar protein sorting-associated protein VTA1 homolog OS=Bos taurus GN=VTA1 PE=2 SV=1	75	412	4.0E-19
sp\|Q9SZ15\|LIP5_ARATH	Protein HOMOLOG OF MAMMALIAN LYST-INTERACTING PROTEIN 5 OS=Arabidopsis thaliana GN=LIP5 PE=1 SV=1	63	222	3.0E-15
sp\|Q5R5W5\|VTA1_PONAB	Vacuolar protein sorting-associated protein VTA1 homolog OS=Pongo abelii GN=VTA1 PE=2 SV=1	75	207	6.0E-12
sp\|Q9NP79\|VTA1_HUMAN	Vacuolar protein sorting-associated protein VTA1 homolog OS=Homo sapiens GN=VTA1 PE=1 SV=1	75	207	6.0E-12

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Swissprot ID	Swissprot Description	Start	End	E-value
sp\|O13703\|VTA1_SCHPO	Vacuolar protein sorting-associated protein vts1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vts1 PE=3 SV=2	56	410	3.0E-21
sp\|Q32L63\|VTA1_BOVIN	Vacuolar protein sorting-associated protein VTA1 homolog OS=Bos taurus GN=VTA1 PE=2 SV=1	75	412	4.0E-19
sp\|Q9SZ15\|LIP5_ARATH	Protein HOMOLOG OF MAMMALIAN LYST-INTERACTING PROTEIN 5 OS=Arabidopsis thaliana GN=LIP5 PE=1 SV=1	63	222	3.0E-15
sp\|Q5R5W5\|VTA1_PONAB	Vacuolar protein sorting-associated protein VTA1 homolog OS=Pongo abelii GN=VTA1 PE=2 SV=1	75	207	6.0E-12
sp\|Q9NP79\|VTA1_HUMAN	Vacuolar protein sorting-associated protein VTA1 homolog OS=Homo sapiens GN=VTA1 PE=1 SV=1	75	207	6.0E-12
sp\|Q9CR26\|VTA1_MOUSE	Vacuolar protein sorting-associated protein VTA1 homolog OS=Mus musculus GN=Vta1 PE=1 SV=1	75	207	9.0E-12
sp\|Q55B11\|VTA1_DICDI	Vacuolar protein sorting-associated protein VTA1 homolog OS=Dictyostelium discoideum GN=vta1 PE=3 SV=1	47	208	7.0E-11
sp\|Q9CR26\|VTA1_MOUSE	Vacuolar protein sorting-associated protein VTA1 homolog OS=Mus musculus GN=Vta1 PE=1 SV=1	291	412	1.0E-05

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GO

(None)

SignalP

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SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 17	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>OphauB2\|7810 MQQALKENHTWRELSPSACRNDDFLPHAIIQRATPAPSYSPLHISQEMAELPASLKLPDISRFVNRANQLRIIKP AIAYWCEYHAVNQIVSKSLHNADDEAFAFTRGLIERLESTKAARADDDAIVDNDAGRAYVEQFAEETFARAERTL RANKVTRQTADTFDAAATFFELGREWGSLEDETAQRIRFAKWNAARILRAIREGTDPNETNPKPTTSLDDTTGEQ ELRPGAGEGSGFRPLPASVEDVPETTGFPLESDGASLDSSKLDQDAILKPKATGPMDFGVIAQDSATPSAPDLPN QAPPASGTQIPLQPSPHIPTKLPPEFQLSEEAPSDIALPPVAPVAQTPPPQQVIRPPPPPVAPAAPPAPEAVNLR DIGQAQKHAKWAISALNFEDVPTAVNELRNALAALGTR*
Coding	>OphauB2\|7810 ATGCAGCAAGCGTTGAAGGAAAACCACACGTGGCGCGAGCTTTCTCCATCTGCCTGTCGCAATGACGACTTTCTG CCGCATGCCATTATTCAACGTGCCACGCCAGCGCCCTCTTATTCACCTCTACACATTAGCCAGGAAATGGCGGAG CTTCCAGCGTCGCTCAAGCTTCCAGACATTAGTCGCTTCGTCAACCGGGCAAATCAGCTGCGGATCATTAAGCCC GCCATTGCCTATTGGTGCGAATACCATGCCGTGAATCAAATCGTCAGCAAAAGCCTACACAATGCCGATGATGAA GCATTTGCCTTTACGAGGGGCCTTATCGAGCGGCTAGAGAGCACCAAGGCGGCGCGGGCAGATGATGATGCCATT GTAGACAATGACGCTGGGCGGGCCTATGTTGAGCAATTCGCCGAAGAGACATTTGCGCGCGCGGAGCGAACGCTG CGAGCAAATAAAGTAACGAGGCAGACGGCGGATACGTTTGATGCGGCGGCCACGTTTTTCGAACTCGGACGCGAA TGGGGCAGCTTGGAGGATGAAACGGCGCAGAGAATCAGGTTTGCCAAATGGAATGCTGCGCGGATCCTGCGCGCT ATTCGCGAGGGCACTGATCCGAATGAAACAAATCCGAAGCCTACGACAAGTCTTGACGATACTACAGGGGAGCAA GAACTGAGGCCAGGCGCTGGCGAGGGATCGGGATTCAGGCCGTTGCCTGCTTCTGTCGAAGACGTCCCTGAGACG ACGGGCTTTCCCCTAGAGTCTGATGGCGCATCTTTGGACTCGTCGAAACTAGATCAAGACGCTATTTTGAAGCCC AAAGCAACTGGACCTATGGACTTTGGAGTCATAGCCCAAGATTCAGCGACTCCCTCTGCCCCAGACTTGCCAAAC CAAGCTCCGCCGGCGTCGGGGACACAAATACCTTTACAACCTTCACCTCACATCCCGACAAAACTGCCTCCGGAA TTTCAGCTATCAGAGGAAGCTCCCTCAGATATAGCCTTGCCTCCCGTGGCACCAGTGGCGCAAACCCCTCCTCCG CAGCAAGTTATCCGCCCTCCGCCTCCCCCTGTCGCGCCAGCTGCGCCTCCAGCGCCGGAAGCAGTCAACCTTCGC GATATTGGGCAAGCGCAAAAACACGCAAAGTGGGCCATATCGGCGCTGAATTTTGAGGACGTCCCTACAGCTGTC AACGAACTGCGAAATGCACTGGCGGCGCTAGGAACCCGGTAG
Transcript	>OphauB2\|7810 ATGCAGCAAGCGTTGAAGGAAAACCACACGTGGCGCGAGCTTTCTCCATCTGCCTGTCGCAATGACGACTTTCTG CCGCATGCCATTATTCAACGTGCCACGCCAGCGCCCTCTTATTCACCTCTACACATTAGCCAGGAAATGGCGGAG CTTCCAGCGTCGCTCAAGCTTCCAGACATTAGTCGCTTCGTCAACCGGGCAAATCAGCTGCGGATCATTAAGCCC GCCATTGCCTATTGGTGCGAATACCATGCCGTGAATCAAATCGTCAGCAAAAGCCTACACAATGCCGATGATGAA GCATTTGCCTTTACGAGGGGCCTTATCGAGCGGCTAGAGAGCACCAAGGCGGCGCGGGCAGATGATGATGCCATT GTAGACAATGACGCTGGGCGGGCCTATGTTGAGCAATTCGCCGAAGAGACATTTGCGCGCGCGGAGCGAACGCTG CGAGCAAATAAAGTAACGAGGCAGACGGCGGATACGTTTGATGCGGCGGCCACGTTTTTCGAACTCGGACGCGAA TGGGGCAGCTTGGAGGATGAAACGGCGCAGAGAATCAGGTTTGCCAAATGGAATGCTGCGCGGATCCTGCGCGCT ATTCGCGAGGGCACTGATCCGAATGAAACAAATCCGAAGCCTACGACAAGTCTTGACGATACTACAGGGGAGCAA GAACTGAGGCCAGGCGCTGGCGAGGGATCGGGATTCAGGCCGTTGCCTGCTTCTGTCGAAGACGTCCCTGAGACG ACGGGCTTTCCCCTAGAGTCTGATGGCGCATCTTTGGACTCGTCGAAACTAGATCAAGACGCTATTTTGAAGCCC AAAGCAACTGGACCTATGGACTTTGGAGTCATAGCCCAAGATTCAGCGACTCCCTCTGCCCCAGACTTGCCAAAC CAAGCTCCGCCGGCGTCGGGGACACAAATACCTTTACAACCTTCACCTCACATCCCGACAAAACTGCCTCCGGAA TTTCAGCTATCAGAGGAAGCTCCCTCAGATATAGCCTTGCCTCCCGTGGCACCAGTGGCGCAAACCCCTCCTCCG CAGCAAGTTATCCGCCCTCCGCCTCCCCCTGTCGCGCCAGCTGCGCCTCCAGCGCCGGAAGCAGTCAACCTTCGC GATATTGGGCAAGCGCAAAAACACGCAAAGTGGGCCATATCGGCGCTGAATTTTGAGGACGTCCCTACAGCTGTC AACGAACTGCGAAATGCACTGGCGGCGCTAGGAACCCGGTAG
Gene	>OphauB2\|7810 ATGCAGCAAGCGTTGAAGGAAAAGTACGCCAAGCTTAGCTAGCTGTTGAAGCCACTGTGGTGTGACATCGTATTC GTATCTCTAGCCACACGTGGCGCGAGCTTTCTCCATCTGCCTGTCGCAATGACGACTTTCTGCCGCATGCCATTA TTCAACGTGCCACGCCAGCGCCCTCTTATTCACCTCTACACATTAGCCAGGAAATGGCGGAGCTTCCAGCGTCGC TCAAGCTTCCAGACATTAGTCGCTTCGTCAACCGGGCAAATCAGCTGCGGATCATTAAGCCCGCCATTGCCTATT GGTGTCTGTGAAACCCCCCAGCCAAAACCTCCCCGAAAAAGAGAAGCAGAGACACGAAACAAGTTTTGTTGCTCA CGCGTTGGGCCATAGGCGAATACCATGCCGTGAATCAAATCGTCAGCAAAAGCCTACACAATGCCGATGATGAAG CATTTGCCTTTACGAGGGGCCTTATCGAGCGGCTAGAGAGCACCAAGGCGGCGCGGGCAGATGATGATGCCATTG TAGACAATGACGCTGGGCGGGCCTATGTTGAGCAATTCGCCGAAGAGACATTTGCGCGCGCGGAGCGAACGCTGC GAGCAAATAAAGTAACGAGGTAAATGTTGTCATCTTGTGGTCGCGAGCGAAGGAGCGGAAAGCTCATGTGTGGAT AGGCAGACGGCGGATACGTTTGATGCGGCGGCCACGTTTTTCGAACTCGGACGCGAATGGGGCAGCTTGGAGGAT GAAACGGCGCAGAGAATCAGGTTTGCCAAATGGAATGCTGCGCGGATCCTGCGCGCTATTCGCGAGGGCACTGAT CCGAATGAAACAAATCCGAAGCCTACGACAAGTCTTGACGATACTACAGGGGAGCAAGAACTGAGGCCAGGCGCT GGCGAGGGATCGGGATTCAGGCCGTTGCCTGCTTCTGTCGAAGACGTCCCTGAGACGACGGGCTTTCCCCTAGAG TCTGATGGCGCATCTTTGGACTCGTCGAAACTAGATCAAGACGCTATTTTGAAGCCCAAAGCAACTGGACCTATG GACTTTGGAGTCATAGCCCAAGATTCAGCGACTCCCTCTGCCCCAGACTTGCCAAACCAAGCTCCGCCGGCGTCG GGGACACAAATACCTTTACAACCTTCACCTCACATCCCGACAAAACTGCCTCCGGAATTTCAGCTATCAGAGGAA GCTCCCTCAGATATAGCCTTGCCTCCCGTGGCACCAGTGGCGCAAACCCCTCCTCCGCAGCAAGTTATCCGCCCT CCGCCTCCCCCTGTCGCGCCAGCTGCGCCTCCAGCGCCGGAAGCAGTCAACCTTCGCGATATTGGGCAAGCGCAA AAACACGCAAAGTGGGCCATATCGGCGCTGAATTTTGAGGACGTCCCTACAGCTGTCAACGAACTGCGAAATGCA CTGGCGGCGCTAGGAACCCGGTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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