Fungal Genomics

at Utrecht University

General Properties

Protein IDOphauB2|7786
Gene name
LocationContig_89:22444..23640
Strand+
Gene length (bp)1196
Transcript length (bp)987
Coding sequence length (bp)987
Protein length (aa) 329

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF04080 Per1 Per1-like family 3.6E-110 57 316

Swissprot hits

[Show all]
Swissprot ID Swissprot Description Start End E-value
sp|Q9P6N9|PER1_SCHPO Protein PER1 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC823.07 PE=3 SV=1 14 321 2.0E-71
sp|P25625|PER1_YEAST Protein PER1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PER1 PE=1 SV=1 13 315 2.0E-54
sp|Q0VFE3|PGAP3_XENTR Post-GPI attachment to proteins factor 3 OS=Xenopus tropicalis GN=pgap3 PE=2 SV=1 17 315 9.0E-53
sp|Q68EV0|PGAP3_XENLA Post-GPI attachment to proteins factor 3 OS=Xenopus laevis GN=pgap3 PE=2 SV=1 17 324 2.0E-52
sp|Q7K0P4|PGAP3_DROME Post-GPI attachment to proteins factor 3 OS=Drosophila melanogaster GN=PGAP3 PE=1 SV=2 12 310 2.0E-50
[Show all]
[Show less]
Swissprot ID Swissprot Description Start End E-value
sp|Q9P6N9|PER1_SCHPO Protein PER1 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC823.07 PE=3 SV=1 14 321 2.0E-71
sp|P25625|PER1_YEAST Protein PER1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PER1 PE=1 SV=1 13 315 2.0E-54
sp|Q0VFE3|PGAP3_XENTR Post-GPI attachment to proteins factor 3 OS=Xenopus tropicalis GN=pgap3 PE=2 SV=1 17 315 9.0E-53
sp|Q68EV0|PGAP3_XENLA Post-GPI attachment to proteins factor 3 OS=Xenopus laevis GN=pgap3 PE=2 SV=1 17 324 2.0E-52
sp|Q7K0P4|PGAP3_DROME Post-GPI attachment to proteins factor 3 OS=Drosophila melanogaster GN=PGAP3 PE=1 SV=2 12 310 2.0E-50
sp|A2V7M9|PGAP3_CRIGR Post-GPI attachment to proteins factor 3 OS=Cricetulus griseus GN=PGAP3 PE=2 SV=1 26 315 4.0E-49
sp|Q96FM1|PGAP3_HUMAN Post-GPI attachment to proteins factor 3 OS=Homo sapiens GN=PGAP3 PE=1 SV=2 25 315 3.0E-48
sp|A7YWP2|PGAP3_BOVIN Post-GPI attachment to proteins factor 3 OS=Bos taurus GN=PGAP3 PE=2 SV=1 25 315 3.0E-48
sp|A8WFS8|PGAP3_DANRE Post-GPI attachment to proteins factor 3 OS=Danio rerio GN=pgap3 PE=2 SV=1 25 315 5.0E-47
sp|A2A559|PGAP3_MOUSE Post-GPI attachment to proteins factor 3 OS=Mus musculus GN=Pgap3 PE=2 SV=1 26 315 3.0E-46
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GO

GO Term Description Terminal node
GO:0006506 GPI anchor biosynthetic process Yes
GO:0009247 glycolipid biosynthetic process No
GO:0045017 glycerolipid biosynthetic process No
GO:0036211 protein modification process No
GO:0006796 phosphate-containing compound metabolic process No
GO:1901137 carbohydrate derivative biosynthetic process No
GO:1903509 liposaccharide metabolic process No
GO:0006644 phospholipid metabolic process No
GO:0006664 glycolipid metabolic process No
GO:0006497 protein lipidation No
GO:0046474 glycerophospholipid biosynthetic process No
GO:1901576 organic substance biosynthetic process No
GO:0006793 phosphorus metabolic process No
GO:0046467 membrane lipid biosynthetic process No
GO:0090407 organophosphate biosynthetic process No
GO:0006661 phosphatidylinositol biosynthetic process No
GO:0044255 cellular lipid metabolic process No
GO:0008150 biological_process No
GO:0008610 lipid biosynthetic process No
GO:0043170 macromolecule metabolic process No
GO:0006650 glycerophospholipid metabolic process No
GO:0008152 metabolic process No
GO:0006629 lipid metabolic process No
GO:1901564 organonitrogen compound metabolic process No
GO:0019538 protein metabolic process No
GO:0006643 membrane lipid metabolic process No
GO:0009058 biosynthetic process No
GO:0046486 glycerolipid metabolic process No
GO:0044238 primary metabolic process No
GO:0009987 cellular process No
GO:0008654 phospholipid biosynthetic process No
GO:0006807 nitrogen compound metabolic process No
GO:0043412 macromolecule modification No
GO:0044237 cellular metabolic process No
GO:0071704 organic substance metabolic process No
GO:0044249 cellular biosynthetic process No
GO:0006505 GPI anchor metabolic process No
GO:1901135 carbohydrate derivative metabolic process No
GO:0046488 phosphatidylinositol metabolic process No
GO:0019637 organophosphate metabolic process No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 27 0.45

Transmembrane Domains

Domain # Start End Length
1 7 29 22
2 97 119 22
3 140 162 22
4 172 191 19
5 203 221 18
6 231 253 22
7 262 281 19
8 296 313 17

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >OphauB2|7786
MASHRGRLLHATALVALLALCTSVTASLGDRLPEFRQCLEVCEAENCGSGTHVTPIPLGLRLLLWTCPSECDYTC
QHIVTNARVAHGQPIVQFHGKWPFYRFLGMQEPFSVLFSLGNLAAHCNGLRKMRSRIPANYALRPWYIWLARIGI
VTWICSALFHTRDFGLTEELDYFAAGASVCYGMYYTPIRVFRLDRPDPRRRSVLRAWSLICALLYLAHVAYLKGV
RWDYTYNMAANVAAGIVQNILWSWFSVVRYRSSRRTWTIWPGLVVAWVTLAMSMELFDFPPWLGCIDAHSLWHLM
TIGPTILWYNFLVKDVQADLAVTQRLKG*
Coding >OphauB2|7786
ATGGCATCGCACCGGGGCCGGCTTCTTCATGCCACTGCACTCGTCGCCCTGCTGGCCCTCTGCACCAGTGTGACT
GCCTCGCTGGGCGACCGGCTCCCAGAGTTTCGGCAATGTCTCGAGGTCTGCGAGGCTGAGAATTGCGGCTCCGGA
ACCCACGTTACACCCATCCCCTTGGGCCTTCGCCTCCTGCTGTGGACGTGTCCGTCTGAATGTGACTATACTTGC
CAGCACATTGTCACCAACGCCCGCGTCGCCCATGGCCAGCCCATTGTCCAGTTCCATGGCAAATGGCCCTTTTAC
CGCTTCCTTGGCATGCAGGAGCCCTTTTCCGTGCTCTTTTCTCTCGGCAATCTGGCCGCCCACTGCAACGGCCTG
CGCAAGATGCGCTCCCGCATTCCTGCCAACTATGCTCTCCGGCCATGGTACATATGGCTGGCCCGCATCGGCATC
GTCACTTGGATCTGCAGCGCCCTCTTCCACACGCGAGACTTTGGCCTCACGGAAGAGCTCGACTACTTTGCCGCT
GGAGCGTCTGTTTGCTACGGCATGTACTACACGCCAATACGCGTCTTCCGCCTCGACCGCCCCGACCCGCGCCGC
CGCTCTGTGCTCCGTGCCTGGTCTCTCATCTGCGCCTTGCTCTACTTGGCCCACGTAGCTTACCTCAAAGGAGTA
CGCTGGGACTATACGTATAACATGGCGGCCAATGTGGCTGCTGGCATTGTGCAGAATATACTCTGGTCCTGGTTC
AGTGTTGTGCGTTATCGTTCCTCACGCCGCACGTGGACCATCTGGCCTGGTCTAGTCGTTGCTTGGGTCACGCTG
GCCATGAGCATGGAGCTCTTTGACTTTCCTCCCTGGCTTGGATGCATCGACGCCCACAGTCTGTGGCACTTGATG
ACAATTGGCCCCACCATTCTCTGGTACAACTTCTTGGTCAAGGACGTGCAGGCCGATCTTGCTGTCACACAACGC
CTCAAAGGCTAA
Transcript >OphauB2|7786
ATGGCATCGCACCGGGGCCGGCTTCTTCATGCCACTGCACTCGTCGCCCTGCTGGCCCTCTGCACCAGTGTGACT
GCCTCGCTGGGCGACCGGCTCCCAGAGTTTCGGCAATGTCTCGAGGTCTGCGAGGCTGAGAATTGCGGCTCCGGA
ACCCACGTTACACCCATCCCCTTGGGCCTTCGCCTCCTGCTGTGGACGTGTCCGTCTGAATGTGACTATACTTGC
CAGCACATTGTCACCAACGCCCGCGTCGCCCATGGCCAGCCCATTGTCCAGTTCCATGGCAAATGGCCCTTTTAC
CGCTTCCTTGGCATGCAGGAGCCCTTTTCCGTGCTCTTTTCTCTCGGCAATCTGGCCGCCCACTGCAACGGCCTG
CGCAAGATGCGCTCCCGCATTCCTGCCAACTATGCTCTCCGGCCATGGTACATATGGCTGGCCCGCATCGGCATC
GTCACTTGGATCTGCAGCGCCCTCTTCCACACGCGAGACTTTGGCCTCACGGAAGAGCTCGACTACTTTGCCGCT
GGAGCGTCTGTTTGCTACGGCATGTACTACACGCCAATACGCGTCTTCCGCCTCGACCGCCCCGACCCGCGCCGC
CGCTCTGTGCTCCGTGCCTGGTCTCTCATCTGCGCCTTGCTCTACTTGGCCCACGTAGCTTACCTCAAAGGAGTA
CGCTGGGACTATACGTATAACATGGCGGCCAATGTGGCTGCTGGCATTGTGCAGAATATACTCTGGTCCTGGTTC
AGTGTTGTGCGTTATCGTTCCTCACGCCGCACGTGGACCATCTGGCCTGGTCTAGTCGTTGCTTGGGTCACGCTG
GCCATGAGCATGGAGCTCTTTGACTTTCCTCCCTGGCTTGGATGCATCGACGCCCACAGTCTGTGGCACTTGATG
ACAATTGGCCCCACCATTCTCTGGTACAACTTCTTGGTCAAGGACGTGCAGGCCGATCTTGCTGTCACACAACGC
CTCAAAGGCTAA
Gene >OphauB2|7786
ATGGCATCGCACCGGGGCCGGCTTCTTCATGCCACTGCACTCGTCGCCCTGCTGGCCCTCTGCACCAGTGTGACT
GCCTCGCTGGGCGACCGGCTCCCAGAGTTTCGGCAATGTCTCGAGGTTGGCTGCTCTCCCCCATGGTCCGTGGCG
TCGCTCATGGCCCTTGTGGCTACAGGTCTGCGAGGCTGAGAATTGCGGCTCCGGAACCCACGTTACACCCATCCG
TATGCCCCCCCCCCCCTTTCCACGTCTTCCCATCTTCTCGCGGCCGCCAGTTGACAAGAAACGCTCTCGACGCCT
TGAATATACAAAGCCTTGGGCCTTCGCCTCCTGCTGTGGACGTGTCCGTCTGAATGTGACTATACTTGCCAGCAC
ATTGTCACCAACGCCCGCGTCGCCCATGGCCAGCCCATTGTCCAGTTCCATGGCAAATGGCCCTTTTACCGCTTC
CTTGGCATGCAGGAGCCCTTTTCCGTGCTCTTTTCTCTCGGCAATCTGGCCGCCCACTGCAACGGCCTGCGCAAG
ATGCGCTCCCGCATTCCTGCCAACTATGCTCTCCGGCCATGGTACATATGGCTGGCCCGCATCGGCATCGTCACT
TGGATCTGCAGCGCCCTCTTCCACACGCGAGACTTTGGCCTCACGGAAGAGCTCGACTACTTTGCCGCTGGAGCG
TCTGTTTGCTACGGCATGTACTACACGCCAATACGCGTCTTCCGCCTCGACCGCCCCGACCCGCGCCGCCGCTCT
GTGCTCCGTGCCTGGTCTCTCATCTGCGCCTTGCTCTACTTGGCCCACGTAGCTTACCTCAAAGGAGTACGCTGG
GACTATACGTATAACATGGCGGCCAATGTGGCTGCTGGCATTGTGCAGAATATACTCTGGTCCTGGTTCAGTGTT
GTGCGTTATCGTTCCTCACGCCGCACGTGGACCATCTGGCCTGGTCTAGTCGTTGCTTGGGTCACGCTGGCCATG
AGCATGGAGCTCTTTGACTTTCCTCCCTGGCTTGGATGCATCGACGCCCACAGTCTGTGGCACTTGATGACAATT
GGCCCCACCATTCTCTGGTACAAGTAAGTTGTAGCAAGTCTTGATGCGCCATACATGGCTGTCGACTAACCATGC
CATGTTGATGCAGCTTCTTGGTCAAGGACGTGCAGGCCGATCTTGCTGTCACACAACGCCTCAAAGGCTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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