© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauB2|777 |
| Gene name | |
| Location | Contig_116:54664..55874 |
| Strand | - |
| Gene length (bp) | 1210 |
| Transcript length (bp) | 960 |
| Coding sequence length (bp) | 960 |
| Protein length (aa) | 320 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03388 | Lectin_leg-like | Legume-like lectin family | 6.1E-65 | 31 | 251 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O94401|YQF8_SCHPO | L-type lectin-like domain-containing protein C126.08c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC126.08c PE=3 SV=1 | 31 | 274 | 9.0E-55 |
| sp|P59481|LMA2L_MOUSE | VIP36-like protein OS=Mus musculus GN=Lman2l PE=1 SV=1 | 32 | 315 | 7.0E-50 |
| sp|Q5RCF0|LMA2L_PONAB | VIP36-like protein OS=Pongo abelii GN=LMAN2L PE=3 SV=1 | 32 | 315 | 6.0E-49 |
| sp|Q9H0V9|LMA2L_HUMAN | VIP36-like protein OS=Homo sapiens GN=LMAN2L PE=1 SV=1 | 32 | 247 | 7.0E-49 |
| sp|Q2HJD1|LMA2L_BOVIN | VIP36-like protein OS=Bos taurus GN=LMAN2L PE=2 SV=1 | 32 | 247 | 1.0E-48 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O94401|YQF8_SCHPO | L-type lectin-like domain-containing protein C126.08c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC126.08c PE=3 SV=1 | 31 | 274 | 9.0E-55 |
| sp|P59481|LMA2L_MOUSE | VIP36-like protein OS=Mus musculus GN=Lman2l PE=1 SV=1 | 32 | 315 | 7.0E-50 |
| sp|Q5RCF0|LMA2L_PONAB | VIP36-like protein OS=Pongo abelii GN=LMAN2L PE=3 SV=1 | 32 | 315 | 6.0E-49 |
| sp|Q9H0V9|LMA2L_HUMAN | VIP36-like protein OS=Homo sapiens GN=LMAN2L PE=1 SV=1 | 32 | 247 | 7.0E-49 |
| sp|Q2HJD1|LMA2L_BOVIN | VIP36-like protein OS=Bos taurus GN=LMAN2L PE=2 SV=1 | 32 | 247 | 1.0E-48 |
| sp|P49256|LMAN2_CANLF | Vesicular integral-membrane protein VIP36 OS=Canis lupus familiaris GN=LMAN2 PE=1 SV=1 | 32 | 247 | 7.0E-43 |
| sp|Q12907|LMAN2_HUMAN | Vesicular integral-membrane protein VIP36 OS=Homo sapiens GN=LMAN2 PE=1 SV=1 | 32 | 247 | 2.0E-42 |
| sp|Q9DBH5|LMAN2_MOUSE | Vesicular integral-membrane protein VIP36 OS=Mus musculus GN=Lman2 PE=1 SV=2 | 32 | 247 | 3.0E-42 |
| sp|Q9D0F3|LMAN1_MOUSE | Protein ERGIC-53 OS=Mus musculus GN=Lman1 PE=1 SV=1 | 34 | 257 | 3.0E-30 |
| sp|Q62902|LMAN1_RAT | Protein ERGIC-53 OS=Rattus norvegicus GN=Lman1 PE=1 SV=1 | 34 | 257 | 5.0E-30 |
| sp|P49257|LMAN1_HUMAN | Protein ERGIC-53 OS=Homo sapiens GN=LMAN1 PE=1 SV=2 | 2 | 257 | 5.0E-29 |
| sp|Q9TU32|LMAN1_CHLAE | Protein ERGIC-53 OS=Chlorocebus aethiops GN=LMAN1 PE=2 SV=1 | 34 | 257 | 7.0E-29 |
| sp|Q8VCD3|LMA1L_MOUSE | Protein ERGIC-53-like OS=Mus musculus GN=Lman1l PE=2 SV=2 | 54 | 257 | 2.0E-19 |
| sp|Q5FB95|LMA1L_RAT | Protein ERGIC-53-like OS=Rattus norvegicus GN=Lman1l PE=1 SV=1 | 54 | 258 | 6.0E-19 |
| sp|Q9HAT1|LMA1L_HUMAN | Protein ERGIC-53-like OS=Homo sapiens GN=LMAN1L PE=2 SV=2 | 54 | 252 | 7.0E-19 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016020 | membrane | Yes |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005575 | cellular_component | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 21 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 286 | 308 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauB2|777 MRLPSLSAALLAALAWTVQAEERDDLKSISLRTHSLQQPYLDSDMQSRWFDFGGDTIVRTDSYIRLTSDKPSQSG WLYSRVPLTATNWEVEVEFKISGKNHLYGDGFAMWVTKQRAEPGPVFGAVDKFEGLGIFFDTYKNNRPGVVFPYV MAMFGDGQTTYDKDSDGKETELAGCSARGVRHASVPTKLRLTYIQDKQLRLELQYKAEEDWQLCFEKEQPPAIPN IAYLGFSAETGELSDNHDIISVTTKNLYSNPGAAASSKKGKSKSKAKASGSVAGKTEGSSWTWFFTKVIFFFLAV GAAYVGYTAWRTRSRSHRF* |
| Coding | >OphauB2|777 ATGCGGCTGCCCTCCTTGTCGGCCGCGCTGCTTGCGGCGCTCGCATGGACAGTGCAAGCCGAGGAGCGCGATGAT CTTAAGAGCATATCGTTGCGCACTCATAGCTTGCAGCAGCCGTATCTCGATTCAGATATGCAAAGCCGGTGGTTT GACTTTGGCGGCGATACCATTGTGCGGACAGACTCATATATCCGACTGACTTCAGACAAGCCCTCACAGTCGGGA TGGCTGTATTCGCGCGTGCCCCTGACGGCAACGAATTGGGAGGTGGAAGTCGAGTTTAAGATTTCGGGCAAAAAC CATCTCTACGGAGACGGCTTTGCCATGTGGGTGACGAAGCAGCGCGCCGAGCCGGGACCCGTCTTTGGCGCAGTG GACAAGTTTGAAGGCCTGGGCATCTTTTTCGACACGTACAAGAATAACCGGCCGGGCGTCGTCTTTCCCTACGTC ATGGCCATGTTTGGCGACGGGCAGACGACGTACGACAAGGACTCTGACGGCAAGGAGACGGAGCTGGCTGGCTGC TCGGCACGCGGCGTCCGACACGCGTCGGTGCCGACCAAGCTGCGGCTGACGTATATCCAGGACAAGCAGCTGCGG CTCGAGCTGCAGTACAAGGCTGAGGAGGACTGGCAGCTGTGCTTTGAAAAGGAGCAGCCGCCCGCGATTCCCAAC ATTGCCTACCTGGGCTTTAGCGCCGAGACGGGCGAGCTGAGCGACAACCACGACATTATCTCGGTCACGACGAAG AATCTCTACAGCAATCCCGGGGCGGCGGCGAGCAGCAAAAAGGGCAAGAGCAAGAGCAAAGCCAAAGCCAGTGGC AGTGTTGCAGGCAAGACGGAAGGATCCTCGTGGACGTGGTTCTTTACAAAGGTCATCTTTTTCTTCTTGGCGGTG GGGGCGGCGTATGTGGGATATACGGCATGGAGGACACGAAGTAGGAGTCATCGCTTTTAA |
| Transcript | >OphauB2|777 ATGCGGCTGCCCTCCTTGTCGGCCGCGCTGCTTGCGGCGCTCGCATGGACAGTGCAAGCCGAGGAGCGCGATGAT CTTAAGAGCATATCGTTGCGCACTCATAGCTTGCAGCAGCCGTATCTCGATTCAGATATGCAAAGCCGGTGGTTT GACTTTGGCGGCGATACCATTGTGCGGACAGACTCATATATCCGACTGACTTCAGACAAGCCCTCACAGTCGGGA TGGCTGTATTCGCGCGTGCCCCTGACGGCAACGAATTGGGAGGTGGAAGTCGAGTTTAAGATTTCGGGCAAAAAC CATCTCTACGGAGACGGCTTTGCCATGTGGGTGACGAAGCAGCGCGCCGAGCCGGGACCCGTCTTTGGCGCAGTG GACAAGTTTGAAGGCCTGGGCATCTTTTTCGACACGTACAAGAATAACCGGCCGGGCGTCGTCTTTCCCTACGTC ATGGCCATGTTTGGCGACGGGCAGACGACGTACGACAAGGACTCTGACGGCAAGGAGACGGAGCTGGCTGGCTGC TCGGCACGCGGCGTCCGACACGCGTCGGTGCCGACCAAGCTGCGGCTGACGTATATCCAGGACAAGCAGCTGCGG CTCGAGCTGCAGTACAAGGCTGAGGAGGACTGGCAGCTGTGCTTTGAAAAGGAGCAGCCGCCCGCGATTCCCAAC ATTGCCTACCTGGGCTTTAGCGCCGAGACGGGCGAGCTGAGCGACAACCACGACATTATCTCGGTCACGACGAAG AATCTCTACAGCAATCCCGGGGCGGCGGCGAGCAGCAAAAAGGGCAAGAGCAAGAGCAAAGCCAAAGCCAGTGGC AGTGTTGCAGGCAAGACGGAAGGATCCTCGTGGACGTGGTTCTTTACAAAGGTCATCTTTTTCTTCTTGGCGGTG GGGGCGGCGTATGTGGGATATACGGCATGGAGGACACGAAGTAGGAGTCATCGCTTTTAA |
| Gene | >OphauB2|777 ATGCGGCTGCCCTCCTTGTCGGCCGCGCTGCTTGCGGCGCTCGCATGGACAGTGCAAGCCGAGGAGCGCGATGAT CTTAAGAGCATATCGGTTCGTCTTTAAGAATTGGAGCTACGCGGGGGTGGAATCGTTGGACTGACAGAGGAGAAT GCAGTTGCGCACTCATAGCTTGCAGCAGGTCAGTTGGCAAGGGGGGCAGCATGGAGCCCTGGGCTGACGTGGAAG CAGCCGTATCTCGATTCAGATATGCAAAGCCGGTGGTTTGACTTTGGCGGCGATACCATTGTGCGGACAGACTCG TACGTCTTGGCCCAGTGCTTCCATGACAGTTTCCCCGAGACCTCTGGACTCTCTCCTCTCACCTGGCAGCTTGTC CCTATGCAATGGCGGCTACGAGCAAGAGGCGCGCAAGCTGACGGCAAGCTTGCGGCATAGATATATCCGACTGAC TTCAGACAAGCCCTCACAGTCGGGATGGCTGTATTCGCGCGTGCCCCTGACGGCAACGAATTGGGAGGTGGAAGT CGAGTTTAAGATTTCGGGCAAAAACCATCTCTACGGAGACGGCTTTGCCATGTGGGTGACGAAGCAGCGCGCCGA GCCGGGACCCGTCTTTGGCGCAGTGGACAAGTTTGAAGGCCTGGGCATCTTTTTCGACACGTACAAGAATAACCG GCCGGGCGTCGTCTTTCCCTACGTCATGGCCATGTTTGGCGACGGGCAGACGACGTACGACAAGGACTCTGACGG CAAGGAGACGGAGCTGGCTGGCTGCTCGGCACGCGGCGTCCGACACGCGTCGGTGCCGACCAAGCTGCGGCTGAC GTATATCCAGGACAAGCAGCTGCGGCTCGAGCTGCAGTACAAGGCTGAGGAGGACTGGCAGCTGTGCTTTGAAAA GGAGCAGCCGCCCGCGATTCCCAACATTGCCTACCTGGGCTTTAGCGCCGAGACGGGCGAGCTGAGCGACAACCA CGACATTATCTCGGTCACGACGAAGAATCTCTACAGCAATCCCGGGGCGGCGGCGAGCAGCAAAAAGGGCAAGAG CAAGAGCAAAGCCAAAGCCAGTGGCAGTGTTGCAGGCAAGACGGAAGGATCCTCGTGGACGTGGTTCTTTACAAA GGTCATCTTTTTCTTCTTGGCGGTGGGGGCGGCGTATGTGGGATATACGGCATGGAGGACACGAAGTAGGAGTCA TCGCTTTTAA |