© 2023 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | OphauB2|7769 |
| Gene name | |
| Location | Contig_88:66544..68758 |
| Strand | + |
| Gene length (bp) | 2214 |
| Transcript length (bp) | 2037 |
| Coding sequence length (bp) | 2037 |
| Protein length (aa) | 679 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04049 | ANAPC8 | Anaphase promoting complex subunit 8 / Cdc23 | 4.0E-54 | 10 | 191 |
| PF13181 | TPR_8 | Tetratricopeptide repeat | 2.8E-03 | 383 | 414 |
| PF13181 | TPR_8 | Tetratricopeptide repeat | 6.8E-05 | 417 | 447 |
| PF13181 | TPR_8 | Tetratricopeptide repeat | 1.2E-02 | 542 | 568 |
| PF13414 | TPR_11 | TPR repeat | 1.2E-06 | 423 | 462 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O94556|APC8_SCHPO | Anaphase-promoting complex subunit 8 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cut23 PE=1 SV=2 | 6 | 670 | 6.0E-137 |
| sp|P16522|CDC23_YEAST | Anaphase-promoting complex subunit CDC23 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CDC23 PE=1 SV=1 | 8 | 667 | 3.0E-99 |
| sp|Q9STS3|CDC23_ARATH | Anaphase-promoting complex subunit 8 OS=Arabidopsis thaliana GN=APC8 PE=1 SV=1 | 12 | 664 | 4.0E-89 |
| sp|A1A4R8|CDC23_BOVIN | Cell division cycle protein 23 homolog OS=Bos taurus GN=CDC23 PE=2 SV=1 | 24 | 510 | 6.0E-84 |
| sp|Q9UJX2|CDC23_HUMAN | Cell division cycle protein 23 homolog OS=Homo sapiens GN=CDC23 PE=1 SV=3 | 24 | 510 | 9.0E-84 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O94556|APC8_SCHPO | Anaphase-promoting complex subunit 8 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cut23 PE=1 SV=2 | 6 | 670 | 6.0E-137 |
| sp|P16522|CDC23_YEAST | Anaphase-promoting complex subunit CDC23 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CDC23 PE=1 SV=1 | 8 | 667 | 3.0E-99 |
| sp|Q9STS3|CDC23_ARATH | Anaphase-promoting complex subunit 8 OS=Arabidopsis thaliana GN=APC8 PE=1 SV=1 | 12 | 664 | 4.0E-89 |
| sp|A1A4R8|CDC23_BOVIN | Cell division cycle protein 23 homolog OS=Bos taurus GN=CDC23 PE=2 SV=1 | 24 | 510 | 6.0E-84 |
| sp|Q9UJX2|CDC23_HUMAN | Cell division cycle protein 23 homolog OS=Homo sapiens GN=CDC23 PE=1 SV=3 | 24 | 510 | 9.0E-84 |
| sp|Q8BGZ4|CDC23_MOUSE | Cell division cycle protein 23 homolog OS=Mus musculus GN=Cdc23 PE=1 SV=2 | 24 | 510 | 1.0E-83 |
| sp|Q86B11|CDC23_DICDI | Anaphase-promoting complex subunit 8 OS=Dictyostelium discoideum GN=anapc8 PE=3 SV=1 | 218 | 510 | 2.0E-73 |
| sp|Q19294|CDC23_CAEEL | Cell division cycle protein 23 homolog OS=Caenorhabditis elegans GN=mat-3 PE=1 SV=2 | 21 | 600 | 2.0E-41 |
| sp|Q06AN9|CD27A_ARATH | Cell division cycle protein 27 homolog A OS=Arabidopsis thaliana GN=CDC27A PE=1 SV=2 | 260 | 560 | 2.0E-26 |
| sp|Q8LGU6|CD27B_ARATH | Cell division cycle protein 27 homolog B OS=Arabidopsis thaliana GN=CDC27B PE=1 SV=1 | 329 | 514 | 1.0E-24 |
| sp|P17885|BIMA_EMENI | Protein bimA OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=bimA PE=2 SV=1 | 333 | 510 | 2.0E-24 |
| sp|P30260|CDC27_HUMAN | Cell division cycle protein 27 homolog OS=Homo sapiens GN=CDC27 PE=1 SV=2 | 325 | 514 | 3.0E-24 |
| sp|A7Z061|CDC27_BOVIN | Cell division cycle protein 27 homolog OS=Bos taurus GN=CDC27 PE=2 SV=1 | 325 | 514 | 3.0E-24 |
| sp|Q54J83|APC3_DICDI | Anaphase-promoting complex subunit 3 OS=Dictyostelium discoideum GN=anapc3 PE=3 SV=1 | 324 | 511 | 4.0E-24 |
| sp|A2A6Q5|CDC27_MOUSE | Cell division cycle protein 27 homolog OS=Mus musculus GN=Cdc27 PE=1 SV=1 | 325 | 514 | 4.0E-24 |
| sp|Q4V8A2|CDC27_RAT | Cell division cycle protein 27 homolog OS=Rattus norvegicus GN=Cdc27 PE=2 SV=1 | 325 | 514 | 5.0E-24 |
| sp|P10505|APC3_SCHPO | Anaphase-promoting complex subunit 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nuc2 PE=1 SV=3 | 312 | 514 | 3.0E-19 |
| sp|Q9N593|CDC27_CAEEL | Cell division cycle protein 27 homolog OS=Caenorhabditis elegans GN=mat-1 PE=1 SV=1 | 343 | 539 | 1.0E-17 |
| sp|P38042|CDC27_YEAST | Anaphase-promoting complex subunit CDC27 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CDC27 PE=1 SV=2 | 337 | 505 | 2.0E-15 |
| sp|O60184|CYC8_SCHPO | General transcriptional corepressor ssn6 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ssn6 PE=1 SV=1 | 285 | 510 | 6.0E-08 |
| sp|Q9FMA3|PEX5_ARATH | Peroxisome biogenesis protein 5 OS=Arabidopsis thaliana GN=PEX5 PE=1 SV=1 | 368 | 487 | 2.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005515 | protein binding | Yes |
| GO:0005680 | anaphase-promoting complex | Yes |
| GO:0030071 | regulation of mitotic metaphase/anaphase transition | Yes |
| GO:0051128 | regulation of cellular component organization | No |
| GO:0010564 | regulation of cell cycle process | No |
| GO:0033043 | regulation of organelle organization | No |
| GO:0005575 | cellular_component | No |
| GO:1902099 | regulation of metaphase/anaphase transition of cell cycle | No |
| GO:0033045 | regulation of sister chromatid segregation | No |
| GO:0007346 | regulation of mitotic cell cycle | No |
| GO:0005488 | binding | No |
| GO:0008150 | biological_process | No |
| GO:0003674 | molecular_function | No |
| GO:0051983 | regulation of chromosome segregation | No |
| GO:0000151 | ubiquitin ligase complex | No |
| GO:0140535 | intracellular protein-containing complex | No |
| GO:1990234 | transferase complex | No |
| GO:1901990 | regulation of mitotic cell cycle phase transition | No |
| GO:1902494 | catalytic complex | No |
| GO:0050789 | regulation of biological process | No |
| GO:0051726 | regulation of cell cycle | No |
| GO:0010965 | regulation of mitotic sister chromatid separation | No |
| GO:1901987 | regulation of cell cycle phase transition | No |
| GO:1905818 | regulation of chromosome separation | No |
| GO:0031461 | cullin-RING ubiquitin ligase complex | No |
| GO:0065007 | biological regulation | No |
| GO:0033044 | regulation of chromosome organization | No |
| GO:0000152 | nuclear ubiquitin ligase complex | No |
| GO:0050794 | regulation of cellular process | No |
| GO:0140513 | nuclear protein-containing complex | No |
| GO:0032991 | protein-containing complex | No |
| Orthofinder run ID | 4 |
| Orthogroup | 3500 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauB2|7769 MPLTPQEVAQLRIALQDAVVKCSERCLYQSAKWAAELLNALPEADTRDAEGDADLYSSYMSPLLSPNSDPEEAAL EAQEVGKYLLAKSFFDCKEFDRCAAVFLPETLLSAVLESHTVDATTSTTTQKDKAKAKAQDAGAALSSSKSPLPR ISQKSLFLALYAKFMSGEKSKYEESEMVMGPQDVGTVVNKQLLPVGRYLAAWFAERTSDDGDCPANQGWLEYLYG MVLAKEKNDSKALELLIRSVHKMPMNWGCWLEMASLISRVEELNKVLKHCPQNIVAFMFHLHMALELYQQSSSLA VNLEKLLRIFPTSSFLLSCNALLAYHAKDLIAAEQQFSQLLALHPHRLDSLDHYSNILYILNRRPKLAFVAQLCS SVDKFRPESCVVIGNYYSLLSMHEKAVQFFRRALTLDRTCLSAWTLMGHEYVELKNTHAAIESYRRAVDVNRRDY RAWYGLGQTYEMLEMHAYALWYYKKAAGLRPWDGKMWLAVGTCMQKMGRERDGIKALKRALLADTYYDAGSSLGG GRNIFGAHKPTGCMDPEILLQIAVMYDQVGDEDEAKAYMELCVAQEVGSSAMAAAADGSPGDSAMARNDSPGGSD DYDNNGGSGDEGTGVTPATSKARIWLARHAMRTADYVTANRLATELCQDGVEVEEAKALVREIRSIMDSTSAGFD STG* |
| Coding | >OphauB2|7769 ATGCCGCTGACCCCTCAAGAGGTGGCGCAGCTGCGCATCGCTCTGCAGGATGCTGTCGTCAAATGCTCGGAGCGA TGCCTTTATCAATCGGCGAAATGGGCGGCCGAGCTTCTCAATGCACTGCCAGAAGCAGACACACGCGATGCAGAA GGCGACGCCGATTTATATTCGAGCTACATGTCCCCATTGCTGTCGCCCAACTCGGACCCGGAAGAGGCGGCGCTC GAAGCTCAGGAAGTGGGCAAATACCTCTTGGCCAAGTCGTTTTTTGACTGCAAAGAGTTTGATCGCTGCGCCGCC GTTTTCCTGCCCGAGACGCTGCTCTCGGCTGTTTTGGAATCACATACGGTGGATGCGACGACGTCGACAACGACA CAAAAGGACAAGGCTAAAGCCAAGGCTCAAGATGCGGGCGCAGCCTTGTCATCAAGCAAGAGTCCCCTGCCGCGA ATCAGCCAAAAGAGCTTGTTTCTCGCTCTCTATGCCAAGTTTATGTCTGGTGAAAAGAGCAAATACGAAGAGTCG GAAATGGTCATGGGTCCGCAAGACGTGGGCACTGTTGTCAACAAGCAGCTTTTGCCTGTTGGGCGTTATTTGGCT GCCTGGTTTGCCGAGAGGACAAGCGACGATGGCGATTGCCCGGCAAATCAAGGCTGGCTCGAGTACTTATACGGC ATGGTCCTTGCCAAAGAGAAGAATGACTCCAAGGCCCTCGAGTTGCTGATACGAAGCGTGCACAAGATGCCCATG AACTGGGGCTGCTGGCTCGAGATGGCTTCACTCATTTCTAGGGTGGAAGAGTTGAACAAGGTGTTGAAGCACTGC CCGCAGAACATTGTCGCCTTCATGTTCCATCTCCACATGGCACTCGAGTTGTACCAGCAATCTTCTAGCCTGGCA GTCAACCTGGAGAAGCTGTTGCGCATCTTTCCAACTTCGTCCTTTCTCCTGAGCTGCAACGCGCTGCTTGCATAC CACGCCAAGGATCTGATTGCTGCCGAGCAACAATTTAGCCAGCTGCTGGCTCTCCACCCCCACAGACTCGACTCG CTGGACCACTACTCCAACATACTCTACATTCTGAATCGCCGGCCGAAACTGGCCTTTGTGGCGCAGCTTTGCTCA AGCGTGGACAAGTTTCGGCCAGAGTCGTGCGTTGTTATTGGAAACTACTACTCGCTGCTTTCTATGCACGAGAAG GCGGTTCAGTTCTTCCGCAGAGCCCTGACGCTGGACCGGACCTGTCTCTCAGCCTGGACGCTCATGGGCCACGAA TACGTGGAGCTCAAGAACACACACGCCGCCATTGAGTCGTATCGGCGCGCCGTTGACGTCAACCGACGAGACTAT CGAGCCTGGTACGGGCTGGGGCAGACGTACGAGATGCTGGAAATGCACGCGTATGCGCTCTGGTACTACAAAAAG GCGGCTGGTCTCCGGCCGTGGGACGGCAAGATGTGGCTGGCTGTGGGCACGTGCATGCAAAAGATGGGCCGTGAG CGAGACGGCATCAAGGCGCTCAAGCGAGCGCTGCTGGCCGACACATACTATGACGCGGGCAGCAGTCTTGGGGGC GGGCGCAACATCTTTGGCGCCCACAAGCCCACGGGCTGCATGGATCCCGAGATATTGCTGCAGATTGCTGTCATG TACGACCAAGTGGGCGACGAGGACGAGGCCAAGGCATACATGGAGCTTTGTGTGGCGCAAGAGGTGGGAAGCAGC GCCATGGCGGCGGCGGCAGACGGTAGTCCCGGCGACTCTGCCATGGCGCGCAACGACTCACCAGGCGGCTCCGAC GACTACGATAACAATGGCGGCAGTGGCGACGAGGGCACAGGCGTCACTCCAGCCACGAGCAAGGCGCGCATCTGG CTCGCCCGCCACGCAATGCGCACCGCCGACTATGTCACGGCAAACAGACTGGCCACGGAGCTATGCCAGGACGGA GTAGAGGTTGAGGAAGCAAAGGCCCTGGTGCGCGAAATCCGCTCCATCATGGACTCGACGAGTGCTGGCTTTGAC TCGACTGGCTAG |
| Transcript | >OphauB2|7769 ATGCCGCTGACCCCTCAAGAGGTGGCGCAGCTGCGCATCGCTCTGCAGGATGCTGTCGTCAAATGCTCGGAGCGA TGCCTTTATCAATCGGCGAAATGGGCGGCCGAGCTTCTCAATGCACTGCCAGAAGCAGACACACGCGATGCAGAA GGCGACGCCGATTTATATTCGAGCTACATGTCCCCATTGCTGTCGCCCAACTCGGACCCGGAAGAGGCGGCGCTC GAAGCTCAGGAAGTGGGCAAATACCTCTTGGCCAAGTCGTTTTTTGACTGCAAAGAGTTTGATCGCTGCGCCGCC GTTTTCCTGCCCGAGACGCTGCTCTCGGCTGTTTTGGAATCACATACGGTGGATGCGACGACGTCGACAACGACA CAAAAGGACAAGGCTAAAGCCAAGGCTCAAGATGCGGGCGCAGCCTTGTCATCAAGCAAGAGTCCCCTGCCGCGA ATCAGCCAAAAGAGCTTGTTTCTCGCTCTCTATGCCAAGTTTATGTCTGGTGAAAAGAGCAAATACGAAGAGTCG GAAATGGTCATGGGTCCGCAAGACGTGGGCACTGTTGTCAACAAGCAGCTTTTGCCTGTTGGGCGTTATTTGGCT GCCTGGTTTGCCGAGAGGACAAGCGACGATGGCGATTGCCCGGCAAATCAAGGCTGGCTCGAGTACTTATACGGC ATGGTCCTTGCCAAAGAGAAGAATGACTCCAAGGCCCTCGAGTTGCTGATACGAAGCGTGCACAAGATGCCCATG AACTGGGGCTGCTGGCTCGAGATGGCTTCACTCATTTCTAGGGTGGAAGAGTTGAACAAGGTGTTGAAGCACTGC CCGCAGAACATTGTCGCCTTCATGTTCCATCTCCACATGGCACTCGAGTTGTACCAGCAATCTTCTAGCCTGGCA GTCAACCTGGAGAAGCTGTTGCGCATCTTTCCAACTTCGTCCTTTCTCCTGAGCTGCAACGCGCTGCTTGCATAC CACGCCAAGGATCTGATTGCTGCCGAGCAACAATTTAGCCAGCTGCTGGCTCTCCACCCCCACAGACTCGACTCG CTGGACCACTACTCCAACATACTCTACATTCTGAATCGCCGGCCGAAACTGGCCTTTGTGGCGCAGCTTTGCTCA AGCGTGGACAAGTTTCGGCCAGAGTCGTGCGTTGTTATTGGAAACTACTACTCGCTGCTTTCTATGCACGAGAAG GCGGTTCAGTTCTTCCGCAGAGCCCTGACGCTGGACCGGACCTGTCTCTCAGCCTGGACGCTCATGGGCCACGAA TACGTGGAGCTCAAGAACACACACGCCGCCATTGAGTCGTATCGGCGCGCCGTTGACGTCAACCGACGAGACTAT CGAGCCTGGTACGGGCTGGGGCAGACGTACGAGATGCTGGAAATGCACGCGTATGCGCTCTGGTACTACAAAAAG GCGGCTGGTCTCCGGCCGTGGGACGGCAAGATGTGGCTGGCTGTGGGCACGTGCATGCAAAAGATGGGCCGTGAG CGAGACGGCATCAAGGCGCTCAAGCGAGCGCTGCTGGCCGACACATACTATGACGCGGGCAGCAGTCTTGGGGGC GGGCGCAACATCTTTGGCGCCCACAAGCCCACGGGCTGCATGGATCCCGAGATATTGCTGCAGATTGCTGTCATG TACGACCAAGTGGGCGACGAGGACGAGGCCAAGGCATACATGGAGCTTTGTGTGGCGCAAGAGGTGGGAAGCAGC GCCATGGCGGCGGCGGCAGACGGTAGTCCCGGCGACTCTGCCATGGCGCGCAACGACTCACCAGGCGGCTCCGAC GACTACGATAACAATGGCGGCAGTGGCGACGAGGGCACAGGCGTCACTCCAGCCACGAGCAAGGCGCGCATCTGG CTCGCCCGCCACGCAATGCGCACCGCCGACTATGTCACGGCAAACAGACTGGCCACGGAGCTATGCCAGGACGGA GTAGAGGTTGAGGAAGCAAAGGCCCTGGTGCGCGAAATCCGCTCCATCATGGACTCGACGAGTGCTGGCTTTGAC TCGACTGGCTAG |
| Gene | >OphauB2|7769 ATGCCGCTGACCCCTCAAGAGGTGGCGCAGCTGCGCATCGCTCTGCAGGATGCTGTCGTCAAATGCTCGGAGCGA TGCCTTTATCAATCGGCGAAATGGTACATGCCAGTCGTTTTGTCTTGGTCATGGAGCTTGAGGGCGCTGACGGCT TTACAGGGCGGCCGAGCTTCTCAATGCACTGCCAGAAGCAGACACACGCGATGCAGAAGGCGACGCCGATTTATA TTCGAGCTACATGTCCCCATTGCTGTCGCCCAACTCGGACCCGGAAGAGGCGGCGCTCGAAGCTCAGGAAGTGGG CAAATACCTCTTGGCCAAGTCGTTTTTTGACTGCAAAGAGTTTGATCGCTGCGCCGCCGTTTTCCTGCCCGAGAC GCTGCTCTCGGCTGTTTTGGAATCACATACGGTGGATGCGACGACGTCGACAACGACACAAAAGGACAAGGCTAA AGCCAAGGCTCAAGATGCGGGCGCAGCCTTGTCATCAAGCAAGAGTCCCCTGCCGCGAATCAGCCAAAAGAGCTT GTTTCTCGCTCTCTATGCCAAGTTTATGTCTGGTGAAAAGAGCAAATACGAAGAGTCGGAAATGGTCATGGGTCC GCAAGACGTGGGCACTGTTGTCAACAAGCAGCTTTTGCCTGTTGGGCGTTATTTGGCTGCCTGGTTTGCCGAGAG GACAAGCGACGATGGCGATTGCCCGGCAAATCAAGGCTGGCTCGAGTACTTGTATGGCGTCTTGTCTATGTACTG TATTGCTTGAAAACACCACAGCTAATGATCCTGCTCCAGATACGGCATGGTCCTTGCCAAAGAGAAGAATGACTC CAAGGCCCTCGAGTTGCTGATACGAAGCGTGCACAAGATGCCCATGAACTGGGGCTGCTGGCTCGAGATGGCTTC ACTCATTTCTAGGGTGGAAGAGGTAGGTTGGCTGCGTCTCACGGCTGCTCAGTACAAGGCTTACTAACGATTGCG CAGTTGAACAAGGTGTTGAAGCACTGCCCGCAGAACATTGTCGCCTTCATGTTCCATCTCCACATGGCACTCGAG TTGTACCAGCAATCTTCTAGCCTGGCAGTCAACCTGGAGAAGCTGTTGCGCATCTTTCCAACTTCGTCCTTTCTC CTGAGCTGCAACGCGCTGCTTGCATACCACGCCAAGGATCTGATTGCTGCCGAGCAACAATTTAGCCAGCTGCTG GCTCTCCACCCCCACAGACTCGACTCGCTGGACCACTACTCCAACATACTCTACATTCTGAATCGCCGGCCGAAA CTGGCCTTTGTGGCGCAGCTTTGCTCAAGCGTGGACAAGTTTCGGCCAGAGTCGTGCGTTGTTATTGGAAACTAC TACTCGCTGCTTTCTATGCACGAGAAGGCGGTTCAGTTCTTCCGCAGAGCCCTGACGCTGGACCGGACCTGTCTC TCAGCCTGGACGCTCATGGGCCACGAATACGTGGAGCTCAAGAACACACACGCCGCCATTGAGTCGTATCGGCGC GCCGTTGACGTCAACCGACGAGACTATCGAGCCTGGTACGGGCTGGGGCAGACGTACGAGATGCTGGAAATGCAC GCGTATGCGCTCTGGTACTACAAAAAGGCGGCTGGTCTCCGGCCGTGGGACGGCAAGATGTGGCTGGCTGTGGGC ACGTGCATGCAAAAGATGGGCCGTGAGCGAGACGGCATCAAGGCGCTCAAGCGAGCGCTGCTGGCCGACACATAC TATGACGCGGGCAGCAGTCTTGGGGGCGGGCGCAACATCTTTGGCGCCCACAAGCCCACGGGCTGCATGGATCCC GAGATATTGCTGCAGATTGCTGTCATGTACGACCAAGTGGGCGACGAGGACGAGGCCAAGGCATACATGGAGCTT TGTGTGGCGCAAGAGGTGGGAAGCAGCGCCATGGCGGCGGCGGCAGACGGTAGTCCCGGCGACTCTGCCATGGCG CGCAACGACTCACCAGGCGGCTCCGACGACTACGATAACAATGGCGGCAGTGGCGACGAGGGCACAGGCGTCACT CCAGCCACGAGCAAGGCGCGCATCTGGCTCGCCCGCCACGCAATGCGCACCGCCGACTATGTCACGGCAAACAGA CTGGCCACGGAGCTATGCCAGGACGGAGTAGAGGTTGAGGAAGCAAAGGCCCTGGTGCGCGAAATCCGCTCCATC ATGGACTCGACGAGTGCTGGCTTTGACTCGACTGGCTAG |