© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauB2|7764 |
| Gene name | |
| Location | Contig_88:53517..55594 |
| Strand | + |
| Gene length (bp) | 2077 |
| Transcript length (bp) | 1956 |
| Coding sequence length (bp) | 1956 |
| Protein length (aa) | 652 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF08418 | Pol_alpha_B_N | DNA polymerase alpha subunit B N-terminal | 2.4E-68 | 18 | 252 |
| PF04042 | DNA_pol_E_B | DNA polymerase alpha/epsilon subunit B | 5.8E-42 | 361 | 594 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P38121|DPOA2_YEAST | DNA polymerase alpha subunit B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=POL12 PE=1 SV=1 | 8 | 649 | 5.0E-92 |
| sp|O74946|DPOA2_SCHPO | DNA polymerase alpha subunit B OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pol12 PE=1 SV=1 | 23 | 651 | 2.0E-88 |
| sp|Q14181|DPOA2_HUMAN | DNA polymerase alpha subunit B OS=Homo sapiens GN=POLA2 PE=1 SV=2 | 164 | 629 | 7.0E-50 |
| sp|O89043|DPOA2_RAT | DNA polymerase alpha subunit B OS=Rattus norvegicus GN=Pola2 PE=1 SV=2 | 164 | 622 | 2.0E-46 |
| sp|P33611|DPOA2_MOUSE | DNA polymerase alpha subunit B OS=Mus musculus GN=Pola2 PE=1 SV=2 | 164 | 622 | 5.0E-44 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P38121|DPOA2_YEAST | DNA polymerase alpha subunit B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=POL12 PE=1 SV=1 | 8 | 649 | 5.0E-92 |
| sp|O74946|DPOA2_SCHPO | DNA polymerase alpha subunit B OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pol12 PE=1 SV=1 | 23 | 651 | 2.0E-88 |
| sp|Q14181|DPOA2_HUMAN | DNA polymerase alpha subunit B OS=Homo sapiens GN=POLA2 PE=1 SV=2 | 164 | 629 | 7.0E-50 |
| sp|O89043|DPOA2_RAT | DNA polymerase alpha subunit B OS=Rattus norvegicus GN=Pola2 PE=1 SV=2 | 164 | 622 | 2.0E-46 |
| sp|P33611|DPOA2_MOUSE | DNA polymerase alpha subunit B OS=Mus musculus GN=Pola2 PE=1 SV=2 | 164 | 622 | 5.0E-44 |
| sp|Q58D13|DPOA2_BOVIN | DNA polymerase alpha subunit B OS=Bos taurus GN=POLA2 PE=2 SV=1 | 164 | 596 | 2.0E-39 |
| sp|Q9VB62|DPOA2_DROME | DNA polymerase alpha subunit B OS=Drosophila melanogaster GN=DNApol-alpha73 PE=1 SV=2 | 3 | 640 | 3.0E-31 |
| sp|Q21625|DPOA2_CAEEL | DNA polymerase alpha subunit B OS=Caenorhabditis elegans GN=div-1 PE=3 SV=3 | 229 | 651 | 2.0E-19 |
| sp|Q54S08|DPOA2_DICDI | DNA polymerase alpha subunit B OS=Dictyostelium discoideum GN=polA2 PE=3 SV=2 | 300 | 626 | 3.0E-15 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006260 | DNA replication | Yes |
| GO:0003677 | DNA binding | Yes |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0006725 | cellular aromatic compound metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0005488 | binding | No |
| GO:0003674 | molecular_function | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0090304 | nucleic acid metabolic process | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0006139 | nucleobase-containing compound metabolic process | No |
| GO:0044260 | cellular macromolecule metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0006259 | DNA metabolic process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0009987 | cellular process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0003676 | nucleic acid binding | No |
| GO:0046483 | heterocycle metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 36 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauB2|7764 MAETELESRFSPNKALEPDVAAELRSMMRLHELSAEDLFYKWESFCIKMDIDAQDVGLEAVRNLKQNIQDALEKD QRQQGRSEGQRKAVAATPRAHGGTDMVGMLDGMVPSTPAAGSRKLARPGLGNASASSRKRDREGAFGSSPAGGAR QGVDEANGSQPYSFKARRHAGQVVEILNERLKAAEAAAGPYGEARIKLTAGSDQKKMAYRPLAMKLSEASEILDD AIDDFAERVQAHHGLADSAFGSAARQSTAEVVAVGRIASDAGEGRLNAASLVLEMSRRSGMGLRVRLRMERVACW SFFPGQVVAVRGSNASGSEFVVDEVLSVPLLANAASSQSALAAHRQRLMGTEHDEPAPLSILLASGPYTADDNVD YEPLDALCSQAAHGHVDALILAGPFVDADHPLVATGSFDLPPDASYSADTATMATVFRFLFAPALNRLASASPHT TIILVPSVRDVISKHVAWPQDALPRRDLGLPKTARIVSNPMTLSINEVVMGLCSQDILYQLRAEELVQGAPPGDS KGRLGRYLLEQRHYFPLFPPMDRSRLPKTGTQQGLATGAALDLSYLKLGEMVNVRPDVMLTPSALPPFAMVVESV LMINPGHLSKRRGAGTFARMSLHAPKLNGDAPDNMVSHQVYDRARVEIVRI* |
| Coding | >OphauB2|7764 ATGGCTGAGACGGAACTCGAGAGTCGGTTCTCGCCCAATAAGGCTCTGGAGCCAGACGTGGCAGCTGAGCTGAGG TCCATGATGCGGCTGCACGAGCTGTCGGCTGAAGACCTCTTTTACAAATGGGAGTCGTTTTGCATCAAGATGGAT ATTGATGCGCAAGACGTGGGACTGGAGGCGGTGCGGAATCTCAAGCAAAACATACAAGATGCCTTGGAAAAAGAC CAGCGACAACAGGGGCGGAGCGAGGGGCAGCGCAAGGCAGTAGCGGCAACACCAAGGGCGCATGGCGGTACAGAT ATGGTGGGCATGTTGGATGGCATGGTGCCGAGCACGCCGGCTGCTGGGTCGCGGAAGCTGGCGCGACCTGGGCTG GGCAATGCGAGCGCGTCGAGCAGGAAGAGGGACCGAGAAGGCGCCTTTGGGAGCTCACCGGCAGGCGGCGCGCGG CAAGGAGTGGACGAGGCCAATGGCTCGCAGCCGTATTCCTTCAAGGCGAGACGGCATGCGGGCCAAGTGGTGGAA ATCCTCAACGAGCGCCTCAAAGCAGCAGAGGCGGCAGCTGGGCCGTATGGCGAGGCGCGCATCAAGCTGACGGCG GGGTCGGACCAGAAGAAGATGGCATACCGGCCACTGGCAATGAAGCTGTCGGAGGCGAGCGAGATTCTGGACGAC GCCATCGACGACTTTGCCGAGCGTGTGCAGGCGCACCACGGGCTGGCCGACTCGGCCTTTGGCAGCGCGGCGAGG CAGAGCACGGCCGAGGTGGTTGCAGTCGGGCGCATCGCGTCGGACGCGGGCGAGGGCCGGCTCAATGCGGCGTCG CTGGTGCTGGAGATGTCGCGCCGCAGCGGCATGGGCCTGCGAGTTCGACTGCGCATGGAGCGGGTGGCATGCTGG AGCTTCTTCCCGGGCCAGGTGGTGGCTGTGCGGGGGAGCAATGCCTCGGGCTCCGAGTTTGTCGTGGACGAGGTG CTGTCGGTGCCGCTGCTGGCCAATGCGGCGTCGAGCCAGTCGGCGCTGGCGGCCCATCGTCAGCGTCTCATGGGC ACCGAGCATGACGAGCCGGCGCCGCTCAGCATCTTGCTGGCATCGGGCCCATATACCGCCGACGACAATGTCGAC TACGAGCCGCTAGACGCGCTGTGCTCCCAGGCTGCCCATGGCCATGTCGACGCCCTCATCCTCGCCGGCCCCTTT GTCGACGCCGACCACCCCCTCGTTGCCACGGGCAGCTTTGACCTGCCGCCCGACGCATCCTACAGTGCCGACACG GCAACCATGGCCACCGTCTTTCGCTTCCTCTTTGCCCCGGCGCTCAACCGCCTCGCCTCGGCCAGCCCCCACACT ACCATTATCCTGGTGCCCTCGGTGCGCGACGTCATTTCCAAGCACGTCGCATGGCCGCAAGACGCCCTGCCGCGT CGCGACCTCGGCCTGCCCAAGACGGCGCGCATCGTGTCCAATCCCATGACGCTCTCCATCAACGAAGTCGTCATG GGCCTCTGCAGCCAAGACATTCTCTACCAGCTGCGCGCCGAGGAGCTGGTACAGGGCGCACCTCCCGGCGACTCC AAGGGCCGCCTGGGCCGATATCTGCTCGAGCAGCGACACTATTTCCCCCTTTTTCCCCCCATGGACCGCTCCAGA CTGCCCAAGACGGGCACCCAGCAGGGCCTTGCCACGGGCGCTGCGCTCGACTTGAGCTATCTCAAGCTCGGCGAA ATGGTCAATGTGCGCCCAGATGTCATGCTGACGCCCAGTGCGTTGCCGCCCTTTGCCATGGTTGTGGAAAGCGTC CTCATGATTAACCCGGGCCATCTCTCCAAGCGCAGAGGAGCAGGCACATTTGCTCGCATGAGCTTGCATGCGCCA AAGCTAAATGGCGACGCGCCCGACAACATGGTTAGTCACCAAGTCTACGACCGAGCCCGAGTCGAAATTGTAAGG ATATGA |
| Transcript | >OphauB2|7764 ATGGCTGAGACGGAACTCGAGAGTCGGTTCTCGCCCAATAAGGCTCTGGAGCCAGACGTGGCAGCTGAGCTGAGG TCCATGATGCGGCTGCACGAGCTGTCGGCTGAAGACCTCTTTTACAAATGGGAGTCGTTTTGCATCAAGATGGAT ATTGATGCGCAAGACGTGGGACTGGAGGCGGTGCGGAATCTCAAGCAAAACATACAAGATGCCTTGGAAAAAGAC CAGCGACAACAGGGGCGGAGCGAGGGGCAGCGCAAGGCAGTAGCGGCAACACCAAGGGCGCATGGCGGTACAGAT ATGGTGGGCATGTTGGATGGCATGGTGCCGAGCACGCCGGCTGCTGGGTCGCGGAAGCTGGCGCGACCTGGGCTG GGCAATGCGAGCGCGTCGAGCAGGAAGAGGGACCGAGAAGGCGCCTTTGGGAGCTCACCGGCAGGCGGCGCGCGG CAAGGAGTGGACGAGGCCAATGGCTCGCAGCCGTATTCCTTCAAGGCGAGACGGCATGCGGGCCAAGTGGTGGAA ATCCTCAACGAGCGCCTCAAAGCAGCAGAGGCGGCAGCTGGGCCGTATGGCGAGGCGCGCATCAAGCTGACGGCG GGGTCGGACCAGAAGAAGATGGCATACCGGCCACTGGCAATGAAGCTGTCGGAGGCGAGCGAGATTCTGGACGAC GCCATCGACGACTTTGCCGAGCGTGTGCAGGCGCACCACGGGCTGGCCGACTCGGCCTTTGGCAGCGCGGCGAGG CAGAGCACGGCCGAGGTGGTTGCAGTCGGGCGCATCGCGTCGGACGCGGGCGAGGGCCGGCTCAATGCGGCGTCG CTGGTGCTGGAGATGTCGCGCCGCAGCGGCATGGGCCTGCGAGTTCGACTGCGCATGGAGCGGGTGGCATGCTGG AGCTTCTTCCCGGGCCAGGTGGTGGCTGTGCGGGGGAGCAATGCCTCGGGCTCCGAGTTTGTCGTGGACGAGGTG CTGTCGGTGCCGCTGCTGGCCAATGCGGCGTCGAGCCAGTCGGCGCTGGCGGCCCATCGTCAGCGTCTCATGGGC ACCGAGCATGACGAGCCGGCGCCGCTCAGCATCTTGCTGGCATCGGGCCCATATACCGCCGACGACAATGTCGAC TACGAGCCGCTAGACGCGCTGTGCTCCCAGGCTGCCCATGGCCATGTCGACGCCCTCATCCTCGCCGGCCCCTTT GTCGACGCCGACCACCCCCTCGTTGCCACGGGCAGCTTTGACCTGCCGCCCGACGCATCCTACAGTGCCGACACG GCAACCATGGCCACCGTCTTTCGCTTCCTCTTTGCCCCGGCGCTCAACCGCCTCGCCTCGGCCAGCCCCCACACT ACCATTATCCTGGTGCCCTCGGTGCGCGACGTCATTTCCAAGCACGTCGCATGGCCGCAAGACGCCCTGCCGCGT CGCGACCTCGGCCTGCCCAAGACGGCGCGCATCGTGTCCAATCCCATGACGCTCTCCATCAACGAAGTCGTCATG GGCCTCTGCAGCCAAGACATTCTCTACCAGCTGCGCGCCGAGGAGCTGGTACAGGGCGCACCTCCCGGCGACTCC AAGGGCCGCCTGGGCCGATATCTGCTCGAGCAGCGACACTATTTCCCCCTTTTTCCCCCCATGGACCGCTCCAGA CTGCCCAAGACGGGCACCCAGCAGGGCCTTGCCACGGGCGCTGCGCTCGACTTGAGCTATCTCAAGCTCGGCGAA ATGGTCAATGTGCGCCCAGATGTCATGCTGACGCCCAGTGCGTTGCCGCCCTTTGCCATGGTTGTGGAAAGCGTC CTCATGATTAACCCGGGCCATCTCTCCAAGCGCAGAGGAGCAGGCACATTTGCTCGCATGAGCTTGCATGCGCCA AAGCTAAATGGCGACGCGCCCGACAACATGGTTAGTCACCAAGTCTACGACCGAGCCCGAGTCGAAATTGTAAGG ATATGA |
| Gene | >OphauB2|7764 ATGGCTGAGACGGAACTCGAGAGTCGGTTCTCGCCCAATAAGGCTCTGGAGCCAGACGTGGCAGCTGAGCTGAGG TCCATGATGCGGCTGCACGAGCTGTCGGCTGAAGACCTCTTTTACAAATGGGAGTCGTTTTGCATCAAGATGGAT ATTGATGCGCAAGACGTGGGACTGGAGGCGGTGCGGAATCTCAAGCAAAACATACAAGATGCCTTGGAAAAAGAC CAGCGACAACAGGGGCGGAGCGAGGGGCAGCGCAAGGCAGTAGCGGCAACACCAAGGGCGCATGGCGGTACAGAT ATGGTGGGCATGTTGGATGGCATGGTGCCGAGCACGCCGGCTGCTGGGTCGCGGAAGCTGGCGCGACCTGGGCTG GGCAATGCGAGCGCGTCGAGCAGGAAGAGGGACCGAGAAGGCGCCTTTGGGAGCTCACCGGCAGGCGGCGCGCGG CAAGGAGTGGACGAGGCCAATGGCTCGCAGTAAGTATGGTGTGTCAGTCGCGGCAGAGGGGCGGGGGCTCACGTG TTTGCAGGCCGTATTCCTTCAAGGCGAGACGGCATGCGGGCCAAGTGGTGGAAATCCTCAACGAGCGCCTCAAAG CAGCAGAGGCGGCAGCTGGGCCGTATGGCGAGGCGCGCATCAAGCTGACGGCGGGGTCGGACCAGAAGAAGATGG CATACCGGCCACTGGCAATGAAGCTGTCGGAGGCGAGCGAGATTCTGGACGACGCCATCGACGACTTTGCCGAGC GTGTGCAGGCGCACCACGGGCTGGCCGACTCGGCCTTTGGCAGCGCGGCGAGGCAGAGCACGGCCGAGGTGGTTG CAGTCGGGCGCATCGCGTCGGACGCGGGCGAGGGCCGGCTCAATGCGGCGTCGCTGGTGCTGGAGATGTCGCGCC GCAGCGGCATGGGCCTGCGAGTTCGACTGCGCATGGAGCGGGTGGCATGCTGGAGCTTCTTCCCGGGCCAGGTGG TGGCTGTGCGGGGGAGCAATGCCTCGGGCTCCGAGTTTGTCGTGGACGAGGTGCTGTCGGTGCCGCTGCTGGCCA ATGCGGCGTCGAGCCAGTCGGCGCTGGCGGCCCATCGTCAGCGTCTCATGGGCACCGAGCATGACGAGCCGGCGC CGCTCAGCATCTTGCTGGCATCGGGCCCATATACCGCCGACGACAATGTCGACTACGAGCCGCTAGACGCGCTGT GCTCCCAGGCTGCCCATGGCCATGTCGACGCCCTCATCCTCGCCGGCCCCTTTGTCGACGCCGACCACCCCCTCG TTGCCACGGGCAGCTTTGACCTGCCGCCCGACGCATCCTACAGTGCCGACACGGCAACCATGGCCACCGTCTTTC GCTTCCTCTTTGCCCCGGCGCTCAACCGCCTCGCCTCGGCCAGCCCCCACACTACCATTATCCTGGTGCCCTCGG TGCGCGACGTCATTTCCAAGCACGTCGCATGGCCGCAAGACGCCCTGCCGCGTCGCGACCTCGGCCTGCCCAAGA CGGCGCGCATCGTGTCCAATCCCATGACGCTCTCCATCAACGAAGTCGTCATGGGCCTCTGCAGCCAAGACATTC TCTACCAGCTGCGCGCCGAGGAGCTGGTACAGGGCGCACCTCCCGGCGACTCCAAGGGCCGCCTGGGCCGATATC TGCTCGAGCAGCGACACTATTTCCCCCTTTTTCCCCCCATGGACCGCTCCAGACTGCCCAAGACGGGCACCCAGC AGGGCCTTGCCACGGGCGCTGCGCTCGACTTGAGCTATCTCAAGCTCGGCGAAATGGTCAATGTGCGCCCAGATG TCATGCTGACGCCCAGTGCGTTGCCGCCCTTTGCCATGGTGAGAAGAAGAAGAAGCCAACTCGATCTGCACAAGT CTTGGTACATGGGGCTAACTGTGTGTGGCAGGTTGTGGAAAGCGTCCTCATGATTAACCCGGGCCATCTCTCCAA GCGCAGAGGAGCAGGCACATTTGCTCGCATGAGCTTGCATGCGCCAAAGCTAAATGGCGACGCGCCCGACAACAT GGTTAGTCACCAAGTCTACGACCGAGCCCGAGTCGAAATTGTAAGGATATGA |