Fungal Genomics

at Utrecht University

General Properties

Protein IDOphauB2|7764
Gene name
LocationContig_88:53517..55594
Strand+
Gene length (bp)2077
Transcript length (bp)1956
Coding sequence length (bp)1956
Protein length (aa) 652

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF08418 Pol_alpha_B_N DNA polymerase alpha subunit B N-terminal 2.4E-68 18 252
PF04042 DNA_pol_E_B DNA polymerase alpha/epsilon subunit B 5.8E-42 361 594

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|P38121|DPOA2_YEAST DNA polymerase alpha subunit B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=POL12 PE=1 SV=1 8 649 5.0E-92
sp|O74946|DPOA2_SCHPO DNA polymerase alpha subunit B OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pol12 PE=1 SV=1 23 651 2.0E-88
sp|Q14181|DPOA2_HUMAN DNA polymerase alpha subunit B OS=Homo sapiens GN=POLA2 PE=1 SV=2 164 629 7.0E-50
sp|O89043|DPOA2_RAT DNA polymerase alpha subunit B OS=Rattus norvegicus GN=Pola2 PE=1 SV=2 164 622 2.0E-46
sp|P33611|DPOA2_MOUSE DNA polymerase alpha subunit B OS=Mus musculus GN=Pola2 PE=1 SV=2 164 622 5.0E-44
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Swissprot ID Swissprot Description Start End E-value
sp|P38121|DPOA2_YEAST DNA polymerase alpha subunit B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=POL12 PE=1 SV=1 8 649 5.0E-92
sp|O74946|DPOA2_SCHPO DNA polymerase alpha subunit B OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pol12 PE=1 SV=1 23 651 2.0E-88
sp|Q14181|DPOA2_HUMAN DNA polymerase alpha subunit B OS=Homo sapiens GN=POLA2 PE=1 SV=2 164 629 7.0E-50
sp|O89043|DPOA2_RAT DNA polymerase alpha subunit B OS=Rattus norvegicus GN=Pola2 PE=1 SV=2 164 622 2.0E-46
sp|P33611|DPOA2_MOUSE DNA polymerase alpha subunit B OS=Mus musculus GN=Pola2 PE=1 SV=2 164 622 5.0E-44
sp|Q58D13|DPOA2_BOVIN DNA polymerase alpha subunit B OS=Bos taurus GN=POLA2 PE=2 SV=1 164 596 2.0E-39
sp|Q9VB62|DPOA2_DROME DNA polymerase alpha subunit B OS=Drosophila melanogaster GN=DNApol-alpha73 PE=1 SV=2 3 640 3.0E-31
sp|Q21625|DPOA2_CAEEL DNA polymerase alpha subunit B OS=Caenorhabditis elegans GN=div-1 PE=3 SV=3 229 651 2.0E-19
sp|Q54S08|DPOA2_DICDI DNA polymerase alpha subunit B OS=Dictyostelium discoideum GN=polA2 PE=3 SV=2 300 626 3.0E-15
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GO

GO Term Description Terminal node
GO:0006260 DNA replication Yes
GO:0003677 DNA binding Yes
GO:1901363 heterocyclic compound binding No
GO:0043170 macromolecule metabolic process No
GO:0006725 cellular aromatic compound metabolic process No
GO:0008150 biological_process No
GO:0005488 binding No
GO:0003674 molecular_function No
GO:0034641 cellular nitrogen compound metabolic process No
GO:0006807 nitrogen compound metabolic process No
GO:1901360 organic cyclic compound metabolic process No
GO:0090304 nucleic acid metabolic process No
GO:0097159 organic cyclic compound binding No
GO:0006139 nucleobase-containing compound metabolic process No
GO:0044260 cellular macromolecule metabolic process No
GO:0071704 organic substance metabolic process No
GO:0006259 DNA metabolic process No
GO:0044237 cellular metabolic process No
GO:0008152 metabolic process No
GO:0009987 cellular process No
GO:0044238 primary metabolic process No
GO:0003676 nucleic acid binding No
GO:0046483 heterocycle metabolic process No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 36 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >OphauB2|7764
MAETELESRFSPNKALEPDVAAELRSMMRLHELSAEDLFYKWESFCIKMDIDAQDVGLEAVRNLKQNIQDALEKD
QRQQGRSEGQRKAVAATPRAHGGTDMVGMLDGMVPSTPAAGSRKLARPGLGNASASSRKRDREGAFGSSPAGGAR
QGVDEANGSQPYSFKARRHAGQVVEILNERLKAAEAAAGPYGEARIKLTAGSDQKKMAYRPLAMKLSEASEILDD
AIDDFAERVQAHHGLADSAFGSAARQSTAEVVAVGRIASDAGEGRLNAASLVLEMSRRSGMGLRVRLRMERVACW
SFFPGQVVAVRGSNASGSEFVVDEVLSVPLLANAASSQSALAAHRQRLMGTEHDEPAPLSILLASGPYTADDNVD
YEPLDALCSQAAHGHVDALILAGPFVDADHPLVATGSFDLPPDASYSADTATMATVFRFLFAPALNRLASASPHT
TIILVPSVRDVISKHVAWPQDALPRRDLGLPKTARIVSNPMTLSINEVVMGLCSQDILYQLRAEELVQGAPPGDS
KGRLGRYLLEQRHYFPLFPPMDRSRLPKTGTQQGLATGAALDLSYLKLGEMVNVRPDVMLTPSALPPFAMVVESV
LMINPGHLSKRRGAGTFARMSLHAPKLNGDAPDNMVSHQVYDRARVEIVRI*
Coding >OphauB2|7764
ATGGCTGAGACGGAACTCGAGAGTCGGTTCTCGCCCAATAAGGCTCTGGAGCCAGACGTGGCAGCTGAGCTGAGG
TCCATGATGCGGCTGCACGAGCTGTCGGCTGAAGACCTCTTTTACAAATGGGAGTCGTTTTGCATCAAGATGGAT
ATTGATGCGCAAGACGTGGGACTGGAGGCGGTGCGGAATCTCAAGCAAAACATACAAGATGCCTTGGAAAAAGAC
CAGCGACAACAGGGGCGGAGCGAGGGGCAGCGCAAGGCAGTAGCGGCAACACCAAGGGCGCATGGCGGTACAGAT
ATGGTGGGCATGTTGGATGGCATGGTGCCGAGCACGCCGGCTGCTGGGTCGCGGAAGCTGGCGCGACCTGGGCTG
GGCAATGCGAGCGCGTCGAGCAGGAAGAGGGACCGAGAAGGCGCCTTTGGGAGCTCACCGGCAGGCGGCGCGCGG
CAAGGAGTGGACGAGGCCAATGGCTCGCAGCCGTATTCCTTCAAGGCGAGACGGCATGCGGGCCAAGTGGTGGAA
ATCCTCAACGAGCGCCTCAAAGCAGCAGAGGCGGCAGCTGGGCCGTATGGCGAGGCGCGCATCAAGCTGACGGCG
GGGTCGGACCAGAAGAAGATGGCATACCGGCCACTGGCAATGAAGCTGTCGGAGGCGAGCGAGATTCTGGACGAC
GCCATCGACGACTTTGCCGAGCGTGTGCAGGCGCACCACGGGCTGGCCGACTCGGCCTTTGGCAGCGCGGCGAGG
CAGAGCACGGCCGAGGTGGTTGCAGTCGGGCGCATCGCGTCGGACGCGGGCGAGGGCCGGCTCAATGCGGCGTCG
CTGGTGCTGGAGATGTCGCGCCGCAGCGGCATGGGCCTGCGAGTTCGACTGCGCATGGAGCGGGTGGCATGCTGG
AGCTTCTTCCCGGGCCAGGTGGTGGCTGTGCGGGGGAGCAATGCCTCGGGCTCCGAGTTTGTCGTGGACGAGGTG
CTGTCGGTGCCGCTGCTGGCCAATGCGGCGTCGAGCCAGTCGGCGCTGGCGGCCCATCGTCAGCGTCTCATGGGC
ACCGAGCATGACGAGCCGGCGCCGCTCAGCATCTTGCTGGCATCGGGCCCATATACCGCCGACGACAATGTCGAC
TACGAGCCGCTAGACGCGCTGTGCTCCCAGGCTGCCCATGGCCATGTCGACGCCCTCATCCTCGCCGGCCCCTTT
GTCGACGCCGACCACCCCCTCGTTGCCACGGGCAGCTTTGACCTGCCGCCCGACGCATCCTACAGTGCCGACACG
GCAACCATGGCCACCGTCTTTCGCTTCCTCTTTGCCCCGGCGCTCAACCGCCTCGCCTCGGCCAGCCCCCACACT
ACCATTATCCTGGTGCCCTCGGTGCGCGACGTCATTTCCAAGCACGTCGCATGGCCGCAAGACGCCCTGCCGCGT
CGCGACCTCGGCCTGCCCAAGACGGCGCGCATCGTGTCCAATCCCATGACGCTCTCCATCAACGAAGTCGTCATG
GGCCTCTGCAGCCAAGACATTCTCTACCAGCTGCGCGCCGAGGAGCTGGTACAGGGCGCACCTCCCGGCGACTCC
AAGGGCCGCCTGGGCCGATATCTGCTCGAGCAGCGACACTATTTCCCCCTTTTTCCCCCCATGGACCGCTCCAGA
CTGCCCAAGACGGGCACCCAGCAGGGCCTTGCCACGGGCGCTGCGCTCGACTTGAGCTATCTCAAGCTCGGCGAA
ATGGTCAATGTGCGCCCAGATGTCATGCTGACGCCCAGTGCGTTGCCGCCCTTTGCCATGGTTGTGGAAAGCGTC
CTCATGATTAACCCGGGCCATCTCTCCAAGCGCAGAGGAGCAGGCACATTTGCTCGCATGAGCTTGCATGCGCCA
AAGCTAAATGGCGACGCGCCCGACAACATGGTTAGTCACCAAGTCTACGACCGAGCCCGAGTCGAAATTGTAAGG
ATATGA
Transcript >OphauB2|7764
ATGGCTGAGACGGAACTCGAGAGTCGGTTCTCGCCCAATAAGGCTCTGGAGCCAGACGTGGCAGCTGAGCTGAGG
TCCATGATGCGGCTGCACGAGCTGTCGGCTGAAGACCTCTTTTACAAATGGGAGTCGTTTTGCATCAAGATGGAT
ATTGATGCGCAAGACGTGGGACTGGAGGCGGTGCGGAATCTCAAGCAAAACATACAAGATGCCTTGGAAAAAGAC
CAGCGACAACAGGGGCGGAGCGAGGGGCAGCGCAAGGCAGTAGCGGCAACACCAAGGGCGCATGGCGGTACAGAT
ATGGTGGGCATGTTGGATGGCATGGTGCCGAGCACGCCGGCTGCTGGGTCGCGGAAGCTGGCGCGACCTGGGCTG
GGCAATGCGAGCGCGTCGAGCAGGAAGAGGGACCGAGAAGGCGCCTTTGGGAGCTCACCGGCAGGCGGCGCGCGG
CAAGGAGTGGACGAGGCCAATGGCTCGCAGCCGTATTCCTTCAAGGCGAGACGGCATGCGGGCCAAGTGGTGGAA
ATCCTCAACGAGCGCCTCAAAGCAGCAGAGGCGGCAGCTGGGCCGTATGGCGAGGCGCGCATCAAGCTGACGGCG
GGGTCGGACCAGAAGAAGATGGCATACCGGCCACTGGCAATGAAGCTGTCGGAGGCGAGCGAGATTCTGGACGAC
GCCATCGACGACTTTGCCGAGCGTGTGCAGGCGCACCACGGGCTGGCCGACTCGGCCTTTGGCAGCGCGGCGAGG
CAGAGCACGGCCGAGGTGGTTGCAGTCGGGCGCATCGCGTCGGACGCGGGCGAGGGCCGGCTCAATGCGGCGTCG
CTGGTGCTGGAGATGTCGCGCCGCAGCGGCATGGGCCTGCGAGTTCGACTGCGCATGGAGCGGGTGGCATGCTGG
AGCTTCTTCCCGGGCCAGGTGGTGGCTGTGCGGGGGAGCAATGCCTCGGGCTCCGAGTTTGTCGTGGACGAGGTG
CTGTCGGTGCCGCTGCTGGCCAATGCGGCGTCGAGCCAGTCGGCGCTGGCGGCCCATCGTCAGCGTCTCATGGGC
ACCGAGCATGACGAGCCGGCGCCGCTCAGCATCTTGCTGGCATCGGGCCCATATACCGCCGACGACAATGTCGAC
TACGAGCCGCTAGACGCGCTGTGCTCCCAGGCTGCCCATGGCCATGTCGACGCCCTCATCCTCGCCGGCCCCTTT
GTCGACGCCGACCACCCCCTCGTTGCCACGGGCAGCTTTGACCTGCCGCCCGACGCATCCTACAGTGCCGACACG
GCAACCATGGCCACCGTCTTTCGCTTCCTCTTTGCCCCGGCGCTCAACCGCCTCGCCTCGGCCAGCCCCCACACT
ACCATTATCCTGGTGCCCTCGGTGCGCGACGTCATTTCCAAGCACGTCGCATGGCCGCAAGACGCCCTGCCGCGT
CGCGACCTCGGCCTGCCCAAGACGGCGCGCATCGTGTCCAATCCCATGACGCTCTCCATCAACGAAGTCGTCATG
GGCCTCTGCAGCCAAGACATTCTCTACCAGCTGCGCGCCGAGGAGCTGGTACAGGGCGCACCTCCCGGCGACTCC
AAGGGCCGCCTGGGCCGATATCTGCTCGAGCAGCGACACTATTTCCCCCTTTTTCCCCCCATGGACCGCTCCAGA
CTGCCCAAGACGGGCACCCAGCAGGGCCTTGCCACGGGCGCTGCGCTCGACTTGAGCTATCTCAAGCTCGGCGAA
ATGGTCAATGTGCGCCCAGATGTCATGCTGACGCCCAGTGCGTTGCCGCCCTTTGCCATGGTTGTGGAAAGCGTC
CTCATGATTAACCCGGGCCATCTCTCCAAGCGCAGAGGAGCAGGCACATTTGCTCGCATGAGCTTGCATGCGCCA
AAGCTAAATGGCGACGCGCCCGACAACATGGTTAGTCACCAAGTCTACGACCGAGCCCGAGTCGAAATTGTAAGG
ATATGA
Gene >OphauB2|7764
ATGGCTGAGACGGAACTCGAGAGTCGGTTCTCGCCCAATAAGGCTCTGGAGCCAGACGTGGCAGCTGAGCTGAGG
TCCATGATGCGGCTGCACGAGCTGTCGGCTGAAGACCTCTTTTACAAATGGGAGTCGTTTTGCATCAAGATGGAT
ATTGATGCGCAAGACGTGGGACTGGAGGCGGTGCGGAATCTCAAGCAAAACATACAAGATGCCTTGGAAAAAGAC
CAGCGACAACAGGGGCGGAGCGAGGGGCAGCGCAAGGCAGTAGCGGCAACACCAAGGGCGCATGGCGGTACAGAT
ATGGTGGGCATGTTGGATGGCATGGTGCCGAGCACGCCGGCTGCTGGGTCGCGGAAGCTGGCGCGACCTGGGCTG
GGCAATGCGAGCGCGTCGAGCAGGAAGAGGGACCGAGAAGGCGCCTTTGGGAGCTCACCGGCAGGCGGCGCGCGG
CAAGGAGTGGACGAGGCCAATGGCTCGCAGTAAGTATGGTGTGTCAGTCGCGGCAGAGGGGCGGGGGCTCACGTG
TTTGCAGGCCGTATTCCTTCAAGGCGAGACGGCATGCGGGCCAAGTGGTGGAAATCCTCAACGAGCGCCTCAAAG
CAGCAGAGGCGGCAGCTGGGCCGTATGGCGAGGCGCGCATCAAGCTGACGGCGGGGTCGGACCAGAAGAAGATGG
CATACCGGCCACTGGCAATGAAGCTGTCGGAGGCGAGCGAGATTCTGGACGACGCCATCGACGACTTTGCCGAGC
GTGTGCAGGCGCACCACGGGCTGGCCGACTCGGCCTTTGGCAGCGCGGCGAGGCAGAGCACGGCCGAGGTGGTTG
CAGTCGGGCGCATCGCGTCGGACGCGGGCGAGGGCCGGCTCAATGCGGCGTCGCTGGTGCTGGAGATGTCGCGCC
GCAGCGGCATGGGCCTGCGAGTTCGACTGCGCATGGAGCGGGTGGCATGCTGGAGCTTCTTCCCGGGCCAGGTGG
TGGCTGTGCGGGGGAGCAATGCCTCGGGCTCCGAGTTTGTCGTGGACGAGGTGCTGTCGGTGCCGCTGCTGGCCA
ATGCGGCGTCGAGCCAGTCGGCGCTGGCGGCCCATCGTCAGCGTCTCATGGGCACCGAGCATGACGAGCCGGCGC
CGCTCAGCATCTTGCTGGCATCGGGCCCATATACCGCCGACGACAATGTCGACTACGAGCCGCTAGACGCGCTGT
GCTCCCAGGCTGCCCATGGCCATGTCGACGCCCTCATCCTCGCCGGCCCCTTTGTCGACGCCGACCACCCCCTCG
TTGCCACGGGCAGCTTTGACCTGCCGCCCGACGCATCCTACAGTGCCGACACGGCAACCATGGCCACCGTCTTTC
GCTTCCTCTTTGCCCCGGCGCTCAACCGCCTCGCCTCGGCCAGCCCCCACACTACCATTATCCTGGTGCCCTCGG
TGCGCGACGTCATTTCCAAGCACGTCGCATGGCCGCAAGACGCCCTGCCGCGTCGCGACCTCGGCCTGCCCAAGA
CGGCGCGCATCGTGTCCAATCCCATGACGCTCTCCATCAACGAAGTCGTCATGGGCCTCTGCAGCCAAGACATTC
TCTACCAGCTGCGCGCCGAGGAGCTGGTACAGGGCGCACCTCCCGGCGACTCCAAGGGCCGCCTGGGCCGATATC
TGCTCGAGCAGCGACACTATTTCCCCCTTTTTCCCCCCATGGACCGCTCCAGACTGCCCAAGACGGGCACCCAGC
AGGGCCTTGCCACGGGCGCTGCGCTCGACTTGAGCTATCTCAAGCTCGGCGAAATGGTCAATGTGCGCCCAGATG
TCATGCTGACGCCCAGTGCGTTGCCGCCCTTTGCCATGGTGAGAAGAAGAAGAAGCCAACTCGATCTGCACAAGT
CTTGGTACATGGGGCTAACTGTGTGTGGCAGGTTGTGGAAAGCGTCCTCATGATTAACCCGGGCCATCTCTCCAA
GCGCAGAGGAGCAGGCACATTTGCTCGCATGAGCTTGCATGCGCCAAAGCTAAATGGCGACGCGCCCGACAACAT
GGTTAGTCACCAAGTCTACGACCGAGCCCGAGTCGAAATTGTAAGGATATGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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