© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauB2|7756 |
| Gene name | |
| Location | Contig_88:29970..31453 |
| Strand | - |
| Gene length (bp) | 1483 |
| Transcript length (bp) | 1275 |
| Coding sequence length (bp) | 1275 |
| Protein length (aa) | 425 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01068 | DNA_ligase_A_M | ATP dependent DNA ligase domain | 2.2E-20 | 1 | 181 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q6C8A3|DNLI4_YARLI | DNA ligase 4 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=LIG4 PE=3 SV=1 | 1 | 229 | 1.0E-13 |
| sp|A0RWD6|DNLI_CENSY | DNA ligase OS=Cenarchaeum symbiosum (strain A) GN=lig PE=3 SV=2 | 1 | 226 | 3.0E-11 |
| sp|P52496|DNLI4_CANAL | DNA ligase 4 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=LIG4 PE=2 SV=3 | 1 | 219 | 8.0E-10 |
| sp|Q08387|DNLI4_YEAST | DNA ligase 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DNL4 PE=1 SV=1 | 1 | 219 | 1.0E-09 |
| sp|Q9HJ26|DNLI_THEAC | DNA ligase OS=Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165) GN=lig PE=3 SV=1 | 2 | 228 | 2.0E-08 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q6C8A3|DNLI4_YARLI | DNA ligase 4 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=LIG4 PE=3 SV=1 | 1 | 229 | 1.0E-13 |
| sp|A0RWD6|DNLI_CENSY | DNA ligase OS=Cenarchaeum symbiosum (strain A) GN=lig PE=3 SV=2 | 1 | 226 | 3.0E-11 |
| sp|P52496|DNLI4_CANAL | DNA ligase 4 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=LIG4 PE=2 SV=3 | 1 | 219 | 8.0E-10 |
| sp|Q08387|DNLI4_YEAST | DNA ligase 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DNL4 PE=1 SV=1 | 1 | 219 | 1.0E-09 |
| sp|Q9HJ26|DNLI_THEAC | DNA ligase OS=Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165) GN=lig PE=3 SV=1 | 2 | 228 | 2.0E-08 |
| sp|Q5BH83|DNLI4_EMENI | DNA ligase 4 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=lig4 PE=3 SV=1 | 1 | 365 | 2.0E-08 |
| sp|Q6CSH0|DNLI4_KLULA | DNA ligase 4 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=LIG4 PE=3 SV=1 | 1 | 361 | 2.0E-08 |
| sp|Q8TSR7|DNLI1_METAC | DNA ligase 1 OS=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=lig1 PE=3 SV=1 | 2 | 378 | 1.0E-07 |
| sp|Q75CA4|DNLI4_ASHGO | DNA ligase 4 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=LIG4 PE=3 SV=1 | 1 | 219 | 2.0E-07 |
| sp|Q1DKE7|DNLI4_COCIM | DNA ligase 4 OS=Coccidioides immitis (strain RS) GN=LIG4 PE=3 SV=1 | 1 | 226 | 7.0E-07 |
| sp|B1L3V2|DNLI2_KORCO | DNA ligase 2 OS=Korarchaeum cryptofilum (strain OPF8) GN=lig2 PE=3 SV=1 | 2 | 231 | 8.0E-07 |
| sp|Q9LL84|DNLI4_ARATH | DNA ligase 4 OS=Arabidopsis thaliana GN=LIG4 PE=1 SV=1 | 2 | 212 | 3.0E-06 |
| sp|P12000|DNLI1_SCHPO | DNA ligase 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cdc17 PE=3 SV=1 | 2 | 244 | 4.0E-06 |
| sp|Q9W1H4|DNLI1_DROME | DNA ligase 1 OS=Drosophila melanogaster GN=DNA-ligI PE=1 SV=2 | 2 | 261 | 8.0E-06 |
| sp|Q8PVR7|DNLI1_METMA | DNA ligase 1 OS=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) GN=lig1 PE=3 SV=1 | 2 | 361 | 8.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006310 | DNA recombination | Yes |
| GO:0005524 | ATP binding | Yes |
| GO:0006281 | DNA repair | Yes |
| GO:0003910 | DNA ligase (ATP) activity | Yes |
| GO:0035639 | purine ribonucleoside triphosphate binding | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0003909 | DNA ligase activity | No |
| GO:0097367 | carbohydrate derivative binding | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0016886 | ligase activity, forming phosphoric ester bonds | No |
| GO:0032553 | ribonucleotide binding | No |
| GO:0140640 | catalytic activity, acting on a nucleic acid | No |
| GO:0043167 | ion binding | No |
| GO:0033554 | cellular response to stress | No |
| GO:0000166 | nucleotide binding | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:0003824 | catalytic activity | No |
| GO:0003674 | molecular_function | No |
| GO:0005488 | binding | No |
| GO:0140097 | catalytic activity, acting on DNA | No |
| GO:0008150 | biological_process | No |
| GO:0006725 | cellular aromatic compound metabolic process | No |
| GO:0006950 | response to stress | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0043168 | anion binding | No |
| GO:0046483 | heterocycle metabolic process | No |
| GO:0006974 | cellular response to DNA damage stimulus | No |
| GO:0030554 | adenyl nucleotide binding | No |
| GO:0044238 | primary metabolic process | No |
| GO:0016874 | ligase activity | No |
| GO:0009987 | cellular process | No |
| GO:0050896 | response to stimulus | No |
| GO:0036094 | small molecule binding | No |
| GO:0032559 | adenyl ribonucleotide binding | No |
| GO:0008152 | metabolic process | No |
| GO:0051716 | cellular response to stimulus | No |
| GO:0006259 | DNA metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0044260 | cellular macromolecule metabolic process | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0032555 | purine ribonucleotide binding | No |
| GO:1901265 | nucleoside phosphate binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0090304 | nucleic acid metabolic process | No |
| GO:0017076 | purine nucleotide binding | No |
| GO:0006139 | nucleobase-containing compound metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 41 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauB2|7756 MDGEYCQIHVDAAHGPPRIQIFSKSGKDSTEDRVGLHDTIAQSLKLGSLDCKVRKQCILEGELVVYSDKENKILP FHKIRNHVSRRGLFLNVEQDSPPRDCEHLMIIYFDILLLDDDSLLATRHSERFKILERIVSQRQGWSELIQRQVI DFRSHYASSDLRNAFASIIVAKDEGLVLKPDEPYFNLEGFNKSLAGCCIKLKKEYIGNFGDVGDFAVVGAGFNAA KAKSYNIPNVKWTHFFIGCITNKEKAKNPQINSEFTVVNVVELNKTQIGTLLKFGTPLPLSVSENKAIKVQVPRG IDTSTPMTVIFQNPLVFDLRCFSFDKPGNVGFWTLRFPVVSKIHFDRDYTDTVSFDELQQMAKEATTIPEVKDSQ ENLAWVAKLESADPMDSNLDAIKYKCLCLAYDSQASSTSLQIFDTTWAN* |
| Coding | >OphauB2|7756 ATGGATGGCGAGTACTGCCAGATACACGTTGATGCTGCGCACGGCCCACCACGCATCCAAATCTTCTCCAAGAGT GGCAAAGATAGCACTGAAGATAGAGTGGGATTGCACGACACCATTGCTCAATCGCTCAAACTTGGCTCTCTCGAT TGTAAAGTTCGCAAACAGTGCATCCTCGAAGGGGAGCTTGTTGTCTACAGCGACAAGGAAAACAAGATTCTTCCT TTTCACAAAATACGAAACCATGTATCGCGCCGAGGCTTATTCCTGAATGTAGAACAGGACTCTCCGCCACGGGAC TGCGAACACCTTATGATTATATATTTCGACATCTTGCTCCTAGACGATGATTCTCTCTTGGCCACTCGCCACTCT GAGAGGTTCAAAATTCTTGAAAGAATAGTTTCGCAACGTCAAGGGTGGTCCGAGTTGATTCAAAGACAAGTCATC GACTTCCGAAGCCACTATGCATCTTCTGATTTGAGGAACGCTTTCGCTAGCATTATTGTGGCAAAGGATGAGGGA CTGGTACTGAAGCCAGACGAGCCATACTTCAATCTCGAAGGGTTCAACAAGTCACTTGCAGGCTGCTGTATCAAA CTGAAGAAGGAATACATTGGTAACTTTGGCGATGTTGGTGACTTTGCCGTTGTCGGGGCAGGCTTCAATGCTGCC AAGGCCAAGTCATACAACATCCCAAATGTGAAATGGACCCACTTCTTCATCGGCTGCATCACGAACAAAGAAAAA GCCAAGAACCCCCAGATCAATTCAGAGTTTACTGTCGTCAATGTCGTTGAGCTCAACAAGACGCAAATTGGAACA CTTCTGAAGTTCGGAACGCCTCTACCACTTTCGGTCTCGGAAAACAAGGCAATCAAGGTGCAAGTTCCTCGAGGC ATCGATACAAGCACACCAATGACTGTCATCTTTCAGAACCCGCTCGTCTTTGACCTTAGATGCTTCAGTTTCGAT AAACCTGGAAACGTCGGGTTCTGGACACTGCGATTTCCAGTTGTCAGCAAAATTCACTTTGATCGCGACTACACA GACACTGTTTCGTTTGATGAATTGCAGCAAATGGCCAAAGAGGCCACCACAATTCCTGAGGTGAAAGATAGTCAG GAGAATCTGGCCTGGGTTGCCAAGCTTGAGAGCGCAGACCCTATGGACTCAAATCTCGACGCCATCAAGTACAAG TGTTTGTGCCTCGCCTATGACTCGCAAGCCAGCAGCACCAGCTTGCAGATCTTCGACACCACTTGGGCCAACTGA |
| Transcript | >OphauB2|7756 ATGGATGGCGAGTACTGCCAGATACACGTTGATGCTGCGCACGGCCCACCACGCATCCAAATCTTCTCCAAGAGT GGCAAAGATAGCACTGAAGATAGAGTGGGATTGCACGACACCATTGCTCAATCGCTCAAACTTGGCTCTCTCGAT TGTAAAGTTCGCAAACAGTGCATCCTCGAAGGGGAGCTTGTTGTCTACAGCGACAAGGAAAACAAGATTCTTCCT TTTCACAAAATACGAAACCATGTATCGCGCCGAGGCTTATTCCTGAATGTAGAACAGGACTCTCCGCCACGGGAC TGCGAACACCTTATGATTATATATTTCGACATCTTGCTCCTAGACGATGATTCTCTCTTGGCCACTCGCCACTCT GAGAGGTTCAAAATTCTTGAAAGAATAGTTTCGCAACGTCAAGGGTGGTCCGAGTTGATTCAAAGACAAGTCATC GACTTCCGAAGCCACTATGCATCTTCTGATTTGAGGAACGCTTTCGCTAGCATTATTGTGGCAAAGGATGAGGGA CTGGTACTGAAGCCAGACGAGCCATACTTCAATCTCGAAGGGTTCAACAAGTCACTTGCAGGCTGCTGTATCAAA CTGAAGAAGGAATACATTGGTAACTTTGGCGATGTTGGTGACTTTGCCGTTGTCGGGGCAGGCTTCAATGCTGCC AAGGCCAAGTCATACAACATCCCAAATGTGAAATGGACCCACTTCTTCATCGGCTGCATCACGAACAAAGAAAAA GCCAAGAACCCCCAGATCAATTCAGAGTTTACTGTCGTCAATGTCGTTGAGCTCAACAAGACGCAAATTGGAACA CTTCTGAAGTTCGGAACGCCTCTACCACTTTCGGTCTCGGAAAACAAGGCAATCAAGGTGCAAGTTCCTCGAGGC ATCGATACAAGCACACCAATGACTGTCATCTTTCAGAACCCGCTCGTCTTTGACCTTAGATGCTTCAGTTTCGAT AAACCTGGAAACGTCGGGTTCTGGACACTGCGATTTCCAGTTGTCAGCAAAATTCACTTTGATCGCGACTACACA GACACTGTTTCGTTTGATGAATTGCAGCAAATGGCCAAAGAGGCCACCACAATTCCTGAGGTGAAAGATAGTCAG GAGAATCTGGCCTGGGTTGCCAAGCTTGAGAGCGCAGACCCTATGGACTCAAATCTCGACGCCATCAAGTACAAG TGTTTGTGCCTCGCCTATGACTCGCAAGCCAGCAGCACCAGCTTGCAGATCTTCGACACCACTTGGGCCAACTGA |
| Gene | >OphauB2|7756 ATGGATGGCGAGTACTGCCAGATACACGTTGATGCTGCGCACGGCCCACCACGCATCCAAATCTTCTCCAAGAGT GGCAAAGATAGCACTGAAGATAGAGTGGGATTGCACGAGTAGGTCATACTGTCATCTCTCACCTACACGGCTTAC TGATTCCATGACTAGCACCATTGCTCAATCGCTCAAACTTGGCTCTCTCGATTGTAAAGTTCGCAAACAGTGCAT CCTCGAAGGGGAGCTTGTTGTCTACAGCGACAAGGTAGCATGGCATTCCGCTCTATTTGTCATCTGCTGACAGCC CGTAGGAAAACAAGATTCTTCCTTTTCACAAAATACGAAACCATGTATCGCGCCGAGGCTTATTCCTGAATGTAG AACAGGACTCTCCGTAAGTTGTGTCATTGTCTGTGTGATATTTCACTGACTCTGTTGACGGCACAAGGCCACGGG ACTGCGAACACCTTATGATTATATATTTCGACATCTTGCTCCTAGACGATGATTCTCTCTTGGCCACTCGCCACT CTGAGAGGTTCAAAATTCTTGAAAGAATAGTTTCGCAACGTCAAGGGTGGTCCGAGTTGATTCAAAGACAAGTCA TCGACTTCCGAAGCCACTATGCATCTTCTGATTTGAGGAACGCTTTCGCTAGCATTATTGTGGCAAAGGATGAGG GACTGGTACTGAAGCCAGACGAGCCATACTTCAATCTCGAAGGGTTCAACAAGTCACTTGCAGGCTGCTGTATCA AACTGAAGAAGGAATACATTGGTAACTTTGGCGATGTTGGTGACTTTGCCGTTGTCGGGGCAGGCTTCAATGCTG CCAAGGCCAAGTCATACAACATCCCAAATGTGAAATGGACCCACTTCTTCATCGGCTGCATCACGAACAAAGAAA AAGCCAAGAACCCCCAGATCAATTCAGAGTTTACTGTCGTCAATGTCGTTGAGCTCAACAAGACGCAAATTGGAA CACTTCTGAAGTTCGGAACGCCTCTACCACTTTCGGTCTCGGAAAACAAGGCAATCAAGGTGCAAGTTCCTCGAG GCATCGATACAAGCACACCAATGACTGTCATCTTTCAGAACCCGCTCGTCTTTGACCTTAGATGCTTCAGTTTCG ATAAACCTGGAAACGTCGGGTTCTGGACACTGCGATTTCCAGTTGTCAGCAAAATTCACTTTGATCGCGACTACA CAGACACTGTTTCGTTTGATGAATTGCAGCAAATGGCCAAAGAGGCCACCACAATTCCTGAGGTGAAAGATAGTC AGGAGAATCTGGCCTGGGTTGCCAAGCTTGAGAGCGCAGACCCTATGGACTCAAATCTCGACGCCATCAGTCAGA TGACGACAACGGCTACGATTTCAACGCTGTCAGACTCGAATTCCACCCAGAGTACAAGTGTTTGTGCCTCGCCTA TGACTCGCAAGCCAGCAGCACCAGCTTGCAGATCTTCGACACCACTTGGGCCAACTGA |