© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauB2|7751 |
| Gene name | |
| Location | Contig_88:11956..13603 |
| Strand | - |
| Gene length (bp) | 1647 |
| Transcript length (bp) | 1572 |
| Coding sequence length (bp) | 1572 |
| Protein length (aa) | 524 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF07817 | GLE1 | GLE1-like protein | 3.7E-57 | 217 | 489 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|G0S7F3|GLE1_CHATD | Nucleoporin GLE1 OS=Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) GN=GLE1 PE=3 SV=1 | 1 | 522 | 1.0E-126 |
| sp|Q12315|GLE1_YEAST | Nucleoporin GLE1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GLE1 PE=1 SV=1 | 312 | 508 | 1.0E-15 |
| sp|O94652|GLE1_SCHPO | Nucleoporin gle1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gle1 PE=3 SV=1 | 307 | 520 | 5.0E-07 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016973 | poly(A)+ mRNA export from nucleus | Yes |
| GO:0005643 | nuclear pore | Yes |
| GO:0006810 | transport | No |
| GO:0051641 | cellular localization | No |
| GO:0046907 | intracellular transport | No |
| GO:0006405 | RNA export from nucleus | No |
| GO:0005575 | cellular_component | No |
| GO:0006913 | nucleocytoplasmic transport | No |
| GO:0008150 | biological_process | No |
| GO:0051649 | establishment of localization in cell | No |
| GO:0071702 | organic substance transport | No |
| GO:0050657 | nucleic acid transport | No |
| GO:0051179 | localization | No |
| GO:0051168 | nuclear export | No |
| GO:0051234 | establishment of localization | No |
| GO:0051169 | nuclear transport | No |
| GO:0140513 | nuclear protein-containing complex | No |
| GO:0071705 | nitrogen compound transport | No |
| GO:0009987 | cellular process | No |
| GO:0006406 | mRNA export from nucleus | No |
| GO:0032991 | protein-containing complex | No |
| GO:0015931 | nucleobase-containing compound transport | No |
| GO:0051028 | mRNA transport | No |
| GO:0051236 | establishment of RNA localization | No |
| GO:0050658 | RNA transport | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 15 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauB2|7751 MTRSSPTRKVAFAPSPERTSFCSFLSEDRNSQASHLDALVAAQAEHERIRQTAIRVFELHEIREEHRRILDEERQ EKERLEAEVRLAAEQQKLSELRAQQARQAQQAQQAEQARQAQQAQQAQQAQQDQQAQQAQQAKQAQQARQAQQTT QTPAIPSASNDSRQVGDKASSQTDTPASQQVASASQLVQPVPAPLQSQVQQSTTKPIQDRYLVIHQRLKALRKNL VEHAKDPNSPLKGKLGAFRREIRVAIGQLTGVKGANSKASTKVTSILKEALDGHVPSPPIDVEQIVLEPRQPVQG AINNGQTLPSLFIYLLNICAKAILNQFINECGANPKAAEPIGVFTAQLFSNRDFQWRDKSLIDVLLCKFRALCPV LFGVRGNDKTDKGRLAVGWRRDESSWIPEQNHHDRMAGLGAGFAAIALRDFSRSSRKNPYPPRNYWRALAGIVNS PAGDASSTQGVVLKSMISGYEQRILAFYGNAAVAALKVALVEFPKRLPANVAAVGSLRALADLLRTESGLILD* |
| Coding | >OphauB2|7751 ATGACTCGTTCTTCGCCGACGCGAAAGGTTGCTTTCGCACCGAGTCCCGAACGAACATCATTTTGCAGCTTCCTG TCAGAAGACCGAAACTCGCAGGCCAGTCATCTTGATGCCCTCGTGGCTGCTCAAGCAGAGCATGAGCGTATTCGC CAAACCGCCATACGTGTCTTTGAGCTCCACGAGATCCGAGAAGAACACCGGAGAATTCTGGATGAGGAGCGCCAA GAAAAGGAGAGACTTGAAGCTGAAGTCCGGCTTGCGGCAGAACAACAAAAGCTCTCTGAGCTAAGGGCACAACAA GCACGACAAGCACAGCAAGCACAGCAAGCCGAACAAGCACGACAAGCACAGCAAGCACAGCAAGCACAGCAAGCA CAACAGGATCAACAGGCACAGCAGGCACAGCAGGCAAAACAAGCACAGCAGGCACGACAAGCACAACAAACTACC CAGACGCCAGCCATACCTTCGGCGTCCAATGACTCACGACAAGTTGGCGACAAAGCTTCTTCACAAACAGACACA CCGGCTTCGCAGCAAGTCGCGTCGGCTTCACAGCTAGTTCAGCCCGTGCCAGCCCCACTACAATCTCAAGTGCAA CAATCCACGACAAAGCCCATTCAAGATCGGTACTTGGTAATACATCAGCGACTCAAGGCTTTGCGCAAGAATCTG GTGGAGCACGCAAAGGATCCAAATTCGCCTCTCAAGGGAAAACTAGGCGCATTTCGAAGAGAAATTAGAGTGGCA ATTGGCCAGCTCACTGGTGTCAAGGGAGCTAATTCCAAGGCATCTACCAAGGTCACATCCATCCTCAAGGAAGCG CTTGATGGTCATGTACCCAGTCCTCCCATCGACGTTGAACAAATCGTACTCGAGCCTCGGCAACCAGTCCAAGGC GCCATCAACAACGGGCAGACTCTACCCTCTCTCTTCATATACCTCTTGAATATATGCGCCAAGGCCATTCTCAAC CAATTCATCAACGAATGCGGCGCCAACCCGAAAGCAGCCGAGCCCATTGGCGTCTTCACTGCGCAACTGTTTTCC AACAGAGACTTTCAGTGGAGGGACAAGAGCCTAATCGACGTTTTACTATGCAAATTCCGGGCCCTCTGCCCAGTT CTCTTTGGAGTAAGAGGCAACGATAAGACAGACAAGGGCAGACTAGCTGTTGGCTGGCGAAGAGATGAGTCGTCT TGGATTCCAGAGCAGAATCATCACGATCGAATGGCAGGGCTCGGTGCAGGCTTTGCAGCGATAGCTCTGCGAGAC TTTAGCCGGTCTTCTCGAAAGAATCCCTACCCACCGAGAAACTACTGGAGGGCATTGGCTGGTATTGTCAATTCG CCAGCGGGAGACGCATCCAGCACTCAAGGCGTGGTACTCAAATCCATGATTAGTGGATATGAACAGCGTATTCTG GCATTCTATGGCAATGCAGCTGTTGCGGCTCTCAAGGTGGCATTGGTTGAATTCCCCAAGAGACTGCCGGCCAAT GTGGCTGCAGTGGGATCTCTCAGGGCGCTGGCCGATTTGCTACGCACCGAGAGCGGACTCATCTTGGACTAG |
| Transcript | >OphauB2|7751 ATGACTCGTTCTTCGCCGACGCGAAAGGTTGCTTTCGCACCGAGTCCCGAACGAACATCATTTTGCAGCTTCCTG TCAGAAGACCGAAACTCGCAGGCCAGTCATCTTGATGCCCTCGTGGCTGCTCAAGCAGAGCATGAGCGTATTCGC CAAACCGCCATACGTGTCTTTGAGCTCCACGAGATCCGAGAAGAACACCGGAGAATTCTGGATGAGGAGCGCCAA GAAAAGGAGAGACTTGAAGCTGAAGTCCGGCTTGCGGCAGAACAACAAAAGCTCTCTGAGCTAAGGGCACAACAA GCACGACAAGCACAGCAAGCACAGCAAGCCGAACAAGCACGACAAGCACAGCAAGCACAGCAAGCACAGCAAGCA CAACAGGATCAACAGGCACAGCAGGCACAGCAGGCAAAACAAGCACAGCAGGCACGACAAGCACAACAAACTACC CAGACGCCAGCCATACCTTCGGCGTCCAATGACTCACGACAAGTTGGCGACAAAGCTTCTTCACAAACAGACACA CCGGCTTCGCAGCAAGTCGCGTCGGCTTCACAGCTAGTTCAGCCCGTGCCAGCCCCACTACAATCTCAAGTGCAA CAATCCACGACAAAGCCCATTCAAGATCGGTACTTGGTAATACATCAGCGACTCAAGGCTTTGCGCAAGAATCTG GTGGAGCACGCAAAGGATCCAAATTCGCCTCTCAAGGGAAAACTAGGCGCATTTCGAAGAGAAATTAGAGTGGCA ATTGGCCAGCTCACTGGTGTCAAGGGAGCTAATTCCAAGGCATCTACCAAGGTCACATCCATCCTCAAGGAAGCG CTTGATGGTCATGTACCCAGTCCTCCCATCGACGTTGAACAAATCGTACTCGAGCCTCGGCAACCAGTCCAAGGC GCCATCAACAACGGGCAGACTCTACCCTCTCTCTTCATATACCTCTTGAATATATGCGCCAAGGCCATTCTCAAC CAATTCATCAACGAATGCGGCGCCAACCCGAAAGCAGCCGAGCCCATTGGCGTCTTCACTGCGCAACTGTTTTCC AACAGAGACTTTCAGTGGAGGGACAAGAGCCTAATCGACGTTTTACTATGCAAATTCCGGGCCCTCTGCCCAGTT CTCTTTGGAGTAAGAGGCAACGATAAGACAGACAAGGGCAGACTAGCTGTTGGCTGGCGAAGAGATGAGTCGTCT TGGATTCCAGAGCAGAATCATCACGATCGAATGGCAGGGCTCGGTGCAGGCTTTGCAGCGATAGCTCTGCGAGAC TTTAGCCGGTCTTCTCGAAAGAATCCCTACCCACCGAGAAACTACTGGAGGGCATTGGCTGGTATTGTCAATTCG CCAGCGGGAGACGCATCCAGCACTCAAGGCGTGGTACTCAAATCCATGATTAGTGGATATGAACAGCGTATTCTG GCATTCTATGGCAATGCAGCTGTTGCGGCTCTCAAGGTGGCATTGGTTGAATTCCCCAAGAGACTGCCGGCCAAT GTGGCTGCAGTGGGATCTCTCAGGGCGCTGGCCGATTTGCTACGCACCGAGAGCGGACTCATCTTGGACTAG |
| Gene | >OphauB2|7751 ATGACTCGTTCTTCGCCGACGCGAAAGGTTGCTTTCGCACCGAGTCCCGAACGAACATCATTTTGCAGCTTCCTG TCAGAAGACCGAAACTCGCAGGCCAGTCATCTTGATGCCCTCGTGGCTGCTCAAGCAGAGCATGAGCGTATTCGC CAAACCGCCATACGTGTCTTTGAGCTCCACGAGATCCGAGAAGAACACCGGAGAATTCTGGATGAGGAGCGCCAA GAAAAGGAGAGACTTGAAGCTGAAGTCCGGCTTGCGGCAGAACAACAAAAGCTCTCTGAGCTAAGGGCACAACAA GCACGACAAGCACAGCAAGCACAGCAAGCCGAACAAGCACGACAAGCACAGCAAGCACAGCAAGCACAGCAAGCA CAACAGGATCAACAGGCACAGCAGGCACAGCAGGCAAAACAAGCACAGCAGGCACGACAAGCACAACAAACTACC CAGACGCCAGCCATACCTTCGGCGTCCAATGACTCACGACAAGTTGGCGACAAAGCTTCTTCACAAACAGACACA CCGGCTTCGCAGCAAGTCGCGTCGGCTTCACAGCTAGTTCAGCCCGTGCCAGCCCCACTACAATCTCAAGTGCAA CAATCCACGACAAAGCCCATTCAAGATCGGTACTTGGTAATACATCAGCGACTCAAGGCTTTGCGCAAGAATCTG GTGGAGCACGCAAAGGATCCAAATTCGCCTCTCAAGGGAAAACTAGGCGCATTTCGAAGAGAAATTAGAGTGGCA ATTGGCCAGCTCACTGGTGTCAAGGGAGCTAATTCCAAGGCAGTAAGTGCCAGCTCTTTTGCACCTCAGTTTTTG ATTCTGTGAGACTCTTTTCACAGACTTGCTAACACCGACTAGTCTACCAAGGTCACATCCATCCTCAAGGAAGCG CTTGATGGTCATGTACCCAGTCCTCCCATCGACGTTGAACAAATCGTACTCGAGCCTCGGCAACCAGTCCAAGGC GCCATCAACAACGGGCAGACTCTACCCTCTCTCTTCATATACCTCTTGAATATATGCGCCAAGGCCATTCTCAAC CAATTCATCAACGAATGCGGCGCCAACCCGAAAGCAGCCGAGCCCATTGGCGTCTTCACTGCGCAACTGTTTTCC AACAGAGACTTTCAGTGGAGGGACAAGAGCCTAATCGACGTTTTACTATGCAAATTCCGGGCCCTCTGCCCAGTT CTCTTTGGAGTAAGAGGCAACGATAAGACAGACAAGGGCAGACTAGCTGTTGGCTGGCGAAGAGATGAGTCGTCT TGGATTCCAGAGCAGAATCATCACGATCGAATGGCAGGGCTCGGTGCAGGCTTTGCAGCGATAGCTCTGCGAGAC TTTAGCCGGTCTTCTCGAAAGAATCCCTACCCACCGAGAAACTACTGGAGGGCATTGGCTGGTATTGTCAATTCG CCAGCGGGAGACGCATCCAGCACTCAAGGCGTGGTACTCAAATCCATGATTAGTGGATATGAACAGCGTATTCTG GCATTCTATGGCAATGCAGCTGTTGCGGCTCTCAAGGTGGCATTGGTTGAATTCCCCAAGAGACTGCCGGCCAAT GTGGCTGCAGTGGGATCTCTCAGGGCGCTGGCCGATTTGCTACGCACCGAGAGCGGACTCATCTTGGACTAG |