Fungal Genomics

at Utrecht University

General Properties

Protein IDOphauB2|7491
Gene name
LocationContig_8:256450..257841
Strand-
Gene length (bp)1391
Transcript length (bp)1314
Coding sequence length (bp)1314
Protein length (aa) 438

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01263 Aldose_epim Aldose 1-epimerase 2.6E-46 82 411

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|D4AMB9|GALM_ARTBC Probable aldose 1-epimerase ARB_05372 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_05372 PE=1 SV=1 51 432 1.0E-80
sp|Q9GKX6|GALM_PIG Aldose 1-epimerase OS=Sus scrofa GN=GALM PE=2 SV=1 77 410 1.0E-34
sp|Q5EA79|GALM_BOVIN Aldose 1-epimerase OS=Bos taurus GN=GALM PE=2 SV=1 70 410 3.0E-34
sp|Q96C23|GALM_HUMAN Aldose 1-epimerase OS=Homo sapiens GN=GALM PE=1 SV=1 77 410 3.0E-34
sp|Q66HG4|GALM_RAT Aldose 1-epimerase OS=Rattus norvegicus GN=Galm PE=1 SV=1 77 410 1.0E-33
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Swissprot ID Swissprot Description Start End E-value
sp|D4AMB9|GALM_ARTBC Probable aldose 1-epimerase ARB_05372 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_05372 PE=1 SV=1 51 432 1.0E-80
sp|Q9GKX6|GALM_PIG Aldose 1-epimerase OS=Sus scrofa GN=GALM PE=2 SV=1 77 410 1.0E-34
sp|Q5EA79|GALM_BOVIN Aldose 1-epimerase OS=Bos taurus GN=GALM PE=2 SV=1 70 410 3.0E-34
sp|Q96C23|GALM_HUMAN Aldose 1-epimerase OS=Homo sapiens GN=GALM PE=1 SV=1 77 410 3.0E-34
sp|Q66HG4|GALM_RAT Aldose 1-epimerase OS=Rattus norvegicus GN=Galm PE=1 SV=1 77 410 1.0E-33
sp|Q8K157|GALM_MOUSE Aldose 1-epimerase OS=Mus musculus GN=Galm PE=1 SV=1 77 410 3.0E-33
sp|Q5R8U1|GALM_PONAB Aldose 1-epimerase OS=Pongo abelii GN=GALM PE=2 SV=1 77 410 6.0E-33
sp|P05149|GALM_ACICA Aldose 1-epimerase OS=Acinetobacter calcoaceticus GN=mro PE=1 SV=1 84 410 1.0E-26
sp|P0A9C3|GALM_ECOLI Aldose 1-epimerase OS=Escherichia coli (strain K12) GN=galM PE=1 SV=1 84 431 2.0E-25
sp|P0A9C4|GALM_SHIFL Aldose 1-epimerase OS=Shigella flexneri GN=galM PE=3 SV=1 84 431 2.0E-25
sp|Q9HDU3|GAL10_SCHPO Bifunctional protein gal10 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gal10 PE=3 SV=1 74 415 2.0E-22
sp|P31765|GALM_HAEIN Aldose 1-epimerase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=galM PE=3 SV=2 129 410 4.0E-21
sp|P04397|GAL10_YEAST Bifunctional protein GAL10 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GAL10 PE=1 SV=2 75 410 5.0E-18
sp|P09609|GAL10_KLULA Bifunctional protein GAL10 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=GAL10 PE=2 SV=2 49 434 3.0E-17
sp|P21955|GALM_STRTR Aldose 1-epimerase OS=Streptococcus thermophilus GN=galM PE=3 SV=1 84 408 5.0E-14
sp|P40801|GAL10_PACTA Bifunctional protein GAL10 OS=Pachysolen tannophilus GN=GAL10 PE=2 SV=1 92 243 9.0E-14
sp|Q03PA4|MALEP_LACBA Maltose epimerase OS=Lactobacillus brevis (strain ATCC 367 / JCM 1170) GN=LVIS_1908 PE=1 SV=1 64 432 8.0E-13
sp|P38893|YH10_YEAST Uncharacterized isomerase YHR210C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YHR210C PE=3 SV=1 82 281 8.0E-06
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GO

GO Term Description Terminal node
GO:0005975 carbohydrate metabolic process Yes
GO:0016853 isomerase activity Yes
GO:0003824 catalytic activity No
GO:0044238 primary metabolic process No
GO:0003674 molecular_function No
GO:0008152 metabolic process No
GO:0008150 biological_process No
GO:0071704 organic substance metabolic process No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 21 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >OphauB2|7491
MKWWTTILPLLAALGQRGSAVVQAGGTGGSGGSGGSDYGSGGSGYGSDYGSEGSGSGGSGSGGSSSSKTLGPDKD
GKYWIYGQGLAAAFVPYGASISNLILSDRQGVERDVVGGFDNASYYSMDKQHPHFGGVPGRYANRIRNSTFSIGE
QTFHVAPNENGGRNTLHGGPDGWDWRNFSVVSHTPSAITFSLVDAAGKEGFPGEVVSLVTYALRGRSWDMTMMAM
ATTDATPIMLSSHTYWNLDGFANTDTNLVLNHSMHMPYSGQRIEVDNILIPTGNIVANLPGSVNDFWSRPKQIGA
SFDHPDMPNNCGFNCTGYDNCFTVDRAALGPYDWRTQGPVATLSSQWSGIQLDVYTNQHAMQMYSCSGMNGSMAL
KTTQGTPEFPRTIPKYGCLVLEVQDYIDGINHPEWMRKQIYGPSDAPYVLQATYTFSLLSEP*
Coding >OphauB2|7491
ATGAAGTGGTGGACGACGATTTTGCCGCTGCTGGCGGCGCTGGGACAGAGGGGGAGCGCAGTGGTGCAGGCGGGG
GGGACGGGGGGCAGTGGCGGCAGTGGTGGCAGTGATTATGGCAGTGGTGGCAGTGGTTATGGCAGTGATTATGGC
AGTGAGGGCAGTGGCAGTGGTGGCAGTGGCAGTGGTGGCAGCAGCAGCAGCAAGACTCTCGGGCCCGACAAGGAC
GGCAAGTACTGGATCTACGGCCAAGGACTGGCGGCGGCATTTGTGCCATATGGCGCCTCCATCTCCAACCTCATA
TTGAGCGACCGACAGGGCGTGGAGCGCGACGTGGTGGGCGGCTTTGACAATGCCTCGTACTACTCAATGGACAAG
CAGCACCCGCACTTTGGCGGAGTGCCAGGGCGATATGCCAACCGCATCCGCAACAGCACCTTTAGCATTGGCGAG
CAAACGTTTCACGTGGCGCCCAACGAGAATGGCGGCCGCAACACGCTGCACGGCGGGCCCGACGGCTGGGACTGG
CGCAACTTCAGCGTCGTGTCGCACACGCCCTCGGCCATTACCTTTTCGCTCGTCGACGCGGCCGGCAAGGAGGGC
TTCCCCGGCGAGGTGGTGTCGTTGGTGACGTATGCGCTGCGCGGCCGCAGCTGGGACATGACCATGATGGCCATG
GCCACGACTGACGCCACCCCCATTATGCTGAGCAGCCACACCTACTGGAACCTCGACGGCTTTGCCAACACGGAC
ACCAACCTGGTGCTCAACCACTCCATGCACATGCCCTACAGCGGCCAGCGCATCGAGGTGGACAATATCCTCATT
CCCACGGGCAACATTGTCGCCAACCTGCCCGGCTCTGTCAACGACTTTTGGAGCCGGCCCAAGCAGATTGGCGCC
TCGTTTGACCACCCAGACATGCCCAACAACTGCGGCTTCAACTGCACCGGCTACGACAACTGCTTCACCGTCGAC
CGGGCCGCCCTGGGCCCCTACGACTGGCGCACCCAGGGCCCCGTGGCCACGCTGTCGTCGCAGTGGTCGGGCATC
CAGCTCGACGTCTATACCAACCAGCATGCCATGCAAATGTACTCTTGCAGCGGCATGAATGGCTCCATGGCCCTC
AAGACGACCCAGGGCACCCCCGAGTTCCCGCGCACCATTCCCAAGTACGGCTGTCTCGTGCTCGAGGTCCAGGAC
TACATTGACGGCATCAACCATCCAGAGTGGATGCGCAAGCAAATCTATGGCCCGTCGGATGCCCCCTATGTCTTG
CAGGCCACCTATACCTTTAGCCTGCTGTCGGAACCTTGA
Transcript >OphauB2|7491
ATGAAGTGGTGGACGACGATTTTGCCGCTGCTGGCGGCGCTGGGACAGAGGGGGAGCGCAGTGGTGCAGGCGGGG
GGGACGGGGGGCAGTGGCGGCAGTGGTGGCAGTGATTATGGCAGTGGTGGCAGTGGTTATGGCAGTGATTATGGC
AGTGAGGGCAGTGGCAGTGGTGGCAGTGGCAGTGGTGGCAGCAGCAGCAGCAAGACTCTCGGGCCCGACAAGGAC
GGCAAGTACTGGATCTACGGCCAAGGACTGGCGGCGGCATTTGTGCCATATGGCGCCTCCATCTCCAACCTCATA
TTGAGCGACCGACAGGGCGTGGAGCGCGACGTGGTGGGCGGCTTTGACAATGCCTCGTACTACTCAATGGACAAG
CAGCACCCGCACTTTGGCGGAGTGCCAGGGCGATATGCCAACCGCATCCGCAACAGCACCTTTAGCATTGGCGAG
CAAACGTTTCACGTGGCGCCCAACGAGAATGGCGGCCGCAACACGCTGCACGGCGGGCCCGACGGCTGGGACTGG
CGCAACTTCAGCGTCGTGTCGCACACGCCCTCGGCCATTACCTTTTCGCTCGTCGACGCGGCCGGCAAGGAGGGC
TTCCCCGGCGAGGTGGTGTCGTTGGTGACGTATGCGCTGCGCGGCCGCAGCTGGGACATGACCATGATGGCCATG
GCCACGACTGACGCCACCCCCATTATGCTGAGCAGCCACACCTACTGGAACCTCGACGGCTTTGCCAACACGGAC
ACCAACCTGGTGCTCAACCACTCCATGCACATGCCCTACAGCGGCCAGCGCATCGAGGTGGACAATATCCTCATT
CCCACGGGCAACATTGTCGCCAACCTGCCCGGCTCTGTCAACGACTTTTGGAGCCGGCCCAAGCAGATTGGCGCC
TCGTTTGACCACCCAGACATGCCCAACAACTGCGGCTTCAACTGCACCGGCTACGACAACTGCTTCACCGTCGAC
CGGGCCGCCCTGGGCCCCTACGACTGGCGCACCCAGGGCCCCGTGGCCACGCTGTCGTCGCAGTGGTCGGGCATC
CAGCTCGACGTCTATACCAACCAGCATGCCATGCAAATGTACTCTTGCAGCGGCATGAATGGCTCCATGGCCCTC
AAGACGACCCAGGGCACCCCCGAGTTCCCGCGCACCATTCCCAAGTACGGCTGTCTCGTGCTCGAGGTCCAGGAC
TACATTGACGGCATCAACCATCCAGAGTGGATGCGCAAGCAAATCTATGGCCCGTCGGATGCCCCCTATGTCTTG
CAGGCCACCTATACCTTTAGCCTGCTGTCGGAACCTTGA
Gene >OphauB2|7491
ATGAAGTGGTGGACGACGATTTTGCCGCTGCTGGCGGCGCTGGGACAGAGGGGGAGCGCAGTGGTGCAGGCGGGG
GGGACGGGGGGCAGTGGCGGCAGTGGTGGCAGTGATTATGGCAGTGGTGGCAGTGGTTATGGCAGTGATTATGGC
AGTGAGGGCAGTGGCAGTGGTGGCAGTGGCAGTGGTGGCAGCAGCAGCAGCAAGACTCTCGGGCCCGACAAGGAC
GGCAAGTACTGGATCTACGGCCAAGGACTGGCGGCGGCATTTGTGCCATATGGCGCCTCCATCTCCAACCTCATA
TTGAGCGACCGACAGGGCGTGGAGCGCGACGTGGTGGGCGGCTTTGACAATGCCTCGTACTACTCAATGGACAAG
CAGCACCCGCACTTTGGCGGAGTGCCAGGGCGATATGCCAACCGCATCCGCAACAGCACCTTTAGCATTGGCGAG
CAAACGTTTCACGTGGCGCCCAACGAGAATGGCGGCCGCAACACGCTGCACGGCGGGCCCGACGGCTGGGACTGG
CGCAACTTCAGCGTCGTGTCGCACACGCCCTCGGCCATTACCTTTTCGCTCGTCGACGCGGCCGGCAAGGAGGGC
TTCCCCGGCGAGGTGGTGTCGTTGGTGACGTATGCGCTGCGCGGCCGCAGCTGGGACATGACCATGATGGCCATG
GCCACGACTGACGCCACCCCCATTATGCTGAGCAGCCACACCTACTGGAACCTCGACGGCTTTGCCAACACGGAC
ACCAACCTGGTGCTCAACCACTCCATGCACATGCCCTACAGCGGCCAGCGCATCGAGGTGGACAATATCCTCATT
CCCACGGGCAACATTGTCGCCAACCTGCCCGGCTCTGTCAACGACTTTTGGAGCCGGCCCAAGCAGATTGGCGCC
TCGTTTGACCACCCAGACATGCCCAACAACTGCGGCTTCAACTGCACCGGCTACGGTGAGTTTTGGCCAGCAGCT
GATACAGTCTGGTAGAGAGAGCGCTTGGAGCAGCTGACTGCTAGTCCTTTGACTTAGACAACTGCTTCACCGTCG
ACCGGGCCGCCCTGGGCCCCTACGACTGGCGCACCCAGGGCCCCGTGGCCACGCTGTCGTCGCAGTGGTCGGGCA
TCCAGCTCGACGTCTATACCAACCAGCATGCCATGCAAATGTACTCTTGCAGCGGCATGAATGGCTCCATGGCCC
TCAAGACGACCCAGGGCACCCCCGAGTTCCCGCGCACCATTCCCAAGTACGGCTGTCTCGTGCTCGAGGTCCAGG
ACTACATTGACGGCATCAACCATCCAGAGTGGATGCGCAAGCAAATCTATGGCCCGTCGGATGCCCCCTATGTCT
TGCAGGCCACCTATACCTTTAGCCTGCTGTCGGAACCTTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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