Fungal Genomics

Agaricus bisporus var bisporus H39 Agaricus bisporus var bisporus H97 Agaricus bisporus var burnettii H119p4 Aspergillus niger CBS 112.32 Aspergillus niger CBS 113.50 Aspergillus niger CBS 115988 Aspergillus niger CBS 115989 Aspergillus niger CBS 118.52 Aspergillus niger CBS 124.48 Aspergillus niger CBS 131.52 Aspergillus niger CBS 133816 Aspergillus niger CBS 147320 Aspergillus niger CBS 147321 Aspergillus niger CBS 147322 Aspergillus niger CBS 147323 Aspergillus niger CBS 147324 Aspergillus niger CBS 147343 Aspergillus niger CBS 147344 Aspergillus niger CBS 147345 Aspergillus niger CBS 147346 Aspergillus niger CBS 147347 Aspergillus niger CBS 147352 Aspergillus niger CBS 147353 Aspergillus niger CBS 147371 Aspergillus niger CBS 147482 Aspergillus niger CBS 630.78 Aspergillus niger CBS 769.97 Niveomyces coronatus CBS 149186 Ophiocordyceps australis 1348a (Ghana) Ophiocordyceps australis map64 (Brazil) Ophiocordyceps camponoti-floridani Ophiocordyceps camponoti-rufipedis Ophiocordyceps kimflemingae Ophiocordyceps subramaniannii Penicillium roqueforti DTO002I6 Penicillium roqueforti DTO003C3 Penicillium roqueforti DTO003H1 (CBS 147308) Penicillium roqueforti DTO006G1 Penicillium roqueforti DTO006G7 Penicillium roqueforti DTO012A1 Penicillium roqueforti DTO012A2 (CBS 147309) Penicillium roqueforti DTO012A6 (CBS 147310) Penicillium roqueforti DTO012A7 Penicillium roqueforti DTO012A8 Penicillium roqueforti DTO012A9 Penicillium roqueforti DTO013E5 Penicillium roqueforti DTO013F2 Penicillium roqueforti DTO013F5 (CBS 147311) Penicillium roqueforti DTO027I6 Penicillium roqueforti DTO032C6 Penicillium roqueforti DTO039G3 Penicillium roqueforti DTO046C5 Penicillium roqueforti DTO070G2 (CBS 147317) Penicillium roqueforti DTO081F9 (CBS 147318) Penicillium roqueforti DTO101D6 (CBS 147325) Penicillium roqueforti DTO102I9 (CBS 147326) Penicillium roqueforti DTO126G2 (CBS 147330) Penicillium roqueforti DTO127F7 (CBS 147331) Penicillium roqueforti DTO127F9 (CBS 147332) Penicillium roqueforti DTO130C1 (CBS 147333) Penicillium roqueforti DTO163C3 (CBS 147337) Penicillium roqueforti DTO163F5 (CBS 147338) Penicillium roqueforti DTO163G4 (CBS 147339) Penicillium roqueforti DTO265D5 (CBS 147372) Penicillium roqueforti DTO369A1 (CBS 147354) Penicillium roqueforti DTO375B1 (CBS 147355) Penicillium roqueforti DTO377G2 (LCP 96.3914a) Penicillium roqueforti LCP96 04111 Rhodonia placenta FPRL280 Torrubiellomyces zombiae CBS 149187

General Properties

Protein ID	OphauB2|7473
Gene name
Location	Contig_8:201830..203875
Strand	+
Gene length (bp)	2045
Transcript length (bp)	1926
Coding sequence length (bp)	1926
Protein length (aa)	642

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PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF03467	Smg4_UPF3	Smg-4/UPF3 family	2.3E-45	90	259
PF00076	RRM_1	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	3.8E-05	516	567

Swissprot hits

Swissprot ID	Swissprot Description	Start	End	E-value
sp|Q9FVW4|RENT3_ARATH	Regulator of nonsense transcripts UPF3 OS=Arabidopsis thaliana GN=UPF3 PE=1 SV=1	86	260	2.0E-14
sp|O94260|G3BP_SCHPO	Putative G3BP-like protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nxt3 PE=1 SV=1	475	615	1.0E-08
sp|Q10267|UPF3_SCHPO	Nonsense-mediated mRNA decay protein 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=upf3 PE=3 SV=1	92	258	8.0E-07
sp|Q9H1J1|REN3A_HUMAN	Regulator of nonsense transcripts 3A OS=Homo sapiens GN=UPF3A PE=1 SV=1	92	262	3.0E-06

GO

GO Term	Description	Terminal node
GO:0003723	RNA binding	Yes
GO:0003674	molecular_function	No
GO:0005488	binding	No
GO:1901363	heterocyclic compound binding	No
GO:0097159	organic cyclic compound binding	No
GO:0003676	nucleic acid binding	No

SignalP

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SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 51	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>OphauB2|7473 MSASAPQAISRRPNGAPMASISQPRETLNRAPASFSRASVASNKTPQAKASNEPQPQRPTVKGKGSPDTAKNATT ADGASRRAKTKAAIEGAKAVIRRLPPGMTEAEFTSILGSEYALNQGKVDWFSYRSGKVSVDPSKPSRPSRAYLHI MCKDDIIPLCQIVRSATWEDARSTFTSPCLIGPPVLDFATYKRIPSTKSRSDPRQGTIDQDQEFMDFLEELANPT PSKASVQGDDADEAAKDEAKVTTTPLVEYLKEKSANKGKDHASSKGAKTSLAKGKGVAKEEDLIKKRTREAKPDG KISDPVKILTKKTPTEMAADAAKNVAGQLSGTAATDAPKSRRAGIAAAARILQRDLGLSPGSAHRRARHDAAKAD ADTKASLGKEPMAKMGEGQSLPSDAAAASSSQIPKSHVEPFVAPEPQSMGRRGRGGRTADKGKAAEIPNALVMNP PVILKKKSEYQATEATLGTHSPFHDKTANGSATSSASANPRINGGGKAPSMHKKTATVTAGATRAFVKNVSSSQG VTEASLRQALEAFGAVTSIEVDKRKNFAYVDFAHHQGFLGAVNASPVQVGQTIVQIVERKDKRPLGSGPVASSGG SDRGYARGRRGRGGGGGSSSKANGVTNGVAILSSTNSGGTG*
Coding	>OphauB2|7473 ATGTCGGCTTCCGCACCCCAGGCCATCTCGCGACGGCCGAATGGAGCGCCTATGGCCTCAATATCGCAGCCGAGA GAGACCCTGAACAGAGCGCCAGCCTCTTTTTCCCGAGCCTCCGTCGCCTCCAACAAGACGCCGCAGGCCAAAGCG TCCAATGAGCCCCAGCCCCAGCGCCCTACTGTCAAGGGCAAAGGCTCGCCAGACACAGCCAAAAACGCAACTACT GCCGACGGTGCTTCCAGGCGAGCAAAAACCAAGGCCGCTATTGAGGGCGCAAAGGCTGTCATACGACGCCTCCCC CCCGGCATGACGGAAGCCGAGTTCACTTCCATCCTGGGATCAGAATACGCCCTCAACCAAGGCAAAGTCGACTGG TTTTCCTATCGCTCCGGCAAGGTGTCTGTAGACCCTTCAAAGCCGTCGCGTCCATCTCGAGCTTATCTTCATATT ATGTGCAAGGACGACATCATTCCGCTTTGTCAAATCGTGCGTTCAGCTACTTGGGAGGATGCCAGGTCAACTTTT ACAAGCCCCTGTCTCATCGGTCCCCCCGTCCTCGACTTTGCTACGTACAAGCGCATTCCTAGTACCAAGTCACGC TCCGACCCCAGACAGGGAACTATTGACCAGGACCAGGAATTCATGGACTTTTTAGAGGAACTCGCCAATCCAACC CCATCCAAGGCAAGTGTCCAAGGCGACGATGCTGACGAGGCGGCCAAGGATGAAGCCAAGGTGACAACGACGCCA TTGGTAGAGTATCTCAAAGAGAAATCTGCCAACAAGGGCAAAGATCATGCGTCTAGCAAGGGCGCCAAGACGTCT TTGGCCAAGGGCAAGGGTGTTGCAAAAGAGGAAGACTTGATCAAGAAAAGGACCCGAGAAGCCAAACCAGACGGC AAAATCAGCGATCCAGTCAAGATTCTAACCAAGAAAACCCCGACAGAGATGGCAGCTGACGCAGCCAAGAATGTG GCAGGTCAGCTGAGCGGCACTGCCGCAACGGATGCCCCCAAGAGCCGCCGCGCTGGAATTGCTGCTGCGGCCAGA ATCTTGCAGCGAGACTTGGGCCTGAGCCCTGGCAGTGCTCACCGGCGTGCTAGGCACGACGCCGCGAAAGCAGAT GCCGACACAAAGGCATCGCTGGGCAAGGAGCCCATGGCCAAGATGGGAGAAGGCCAGTCACTGCCGTCTGATGCG GCGGCCGCGTCGTCATCCCAGATACCCAAGAGCCATGTAGAGCCATTTGTTGCCCCAGAACCCCAGTCTATGGGC CGCAGAGGTCGCGGTGGCAGGACCGCAGACAAGGGCAAAGCTGCGGAGATTCCCAATGCGCTTGTCATGAATCCA CCAGTGATTCTCAAAAAGAAAAGCGAATACCAAGCGACAGAAGCGACTTTGGGCACGCACTCACCTTTTCATGAC AAGACTGCCAATGGAAGTGCAACTTCTAGTGCCTCTGCCAACCCAAGAATCAATGGCGGGGGAAAGGCGCCATCA ATGCACAAGAAGACAGCAACAGTCACAGCTGGAGCGACGCGTGCCTTTGTCAAGAATGTCAGCTCTTCCCAGGGC GTTACCGAAGCCTCTCTGCGCCAGGCCCTGGAAGCTTTTGGGGCCGTCACGTCGATCGAGGTTGACAAGCGCAAG AACTTTGCCTACGTTGACTTTGCACACCATCAAGGTTTCCTTGGAGCGGTGAATGCCAGTCCGGTGCAAGTGGGT CAGACCATAGTCCAGATTGTCGAGCGCAAGGACAAGAGGCCTCTAGGCAGTGGACCTGTGGCTAGCTCTGGCGGA TCAGACAGGGGATATGCGCGTGGGCGACGCGGACGTGGAGGTGGAGGCGGCAGCAGCAGCAAGGCCAATGGCGTC ACAAATGGCGTGGCCATTTTGTCTTCTACTAACTCTGGTGGGACTGGATGA
Transcript	>OphauB2|7473 ATGTCGGCTTCCGCACCCCAGGCCATCTCGCGACGGCCGAATGGAGCGCCTATGGCCTCAATATCGCAGCCGAGA GAGACCCTGAACAGAGCGCCAGCCTCTTTTTCCCGAGCCTCCGTCGCCTCCAACAAGACGCCGCAGGCCAAAGCG TCCAATGAGCCCCAGCCCCAGCGCCCTACTGTCAAGGGCAAAGGCTCGCCAGACACAGCCAAAAACGCAACTACT GCCGACGGTGCTTCCAGGCGAGCAAAAACCAAGGCCGCTATTGAGGGCGCAAAGGCTGTCATACGACGCCTCCCC CCCGGCATGACGGAAGCCGAGTTCACTTCCATCCTGGGATCAGAATACGCCCTCAACCAAGGCAAAGTCGACTGG TTTTCCTATCGCTCCGGCAAGGTGTCTGTAGACCCTTCAAAGCCGTCGCGTCCATCTCGAGCTTATCTTCATATT ATGTGCAAGGACGACATCATTCCGCTTTGTCAAATCGTGCGTTCAGCTACTTGGGAGGATGCCAGGTCAACTTTT ACAAGCCCCTGTCTCATCGGTCCCCCCGTCCTCGACTTTGCTACGTACAAGCGCATTCCTAGTACCAAGTCACGC TCCGACCCCAGACAGGGAACTATTGACCAGGACCAGGAATTCATGGACTTTTTAGAGGAACTCGCCAATCCAACC CCATCCAAGGCAAGTGTCCAAGGCGACGATGCTGACGAGGCGGCCAAGGATGAAGCCAAGGTGACAACGACGCCA TTGGTAGAGTATCTCAAAGAGAAATCTGCCAACAAGGGCAAAGATCATGCGTCTAGCAAGGGCGCCAAGACGTCT TTGGCCAAGGGCAAGGGTGTTGCAAAAGAGGAAGACTTGATCAAGAAAAGGACCCGAGAAGCCAAACCAGACGGC AAAATCAGCGATCCAGTCAAGATTCTAACCAAGAAAACCCCGACAGAGATGGCAGCTGACGCAGCCAAGAATGTG GCAGGTCAGCTGAGCGGCACTGCCGCAACGGATGCCCCCAAGAGCCGCCGCGCTGGAATTGCTGCTGCGGCCAGA ATCTTGCAGCGAGACTTGGGCCTGAGCCCTGGCAGTGCTCACCGGCGTGCTAGGCACGACGCCGCGAAAGCAGAT GCCGACACAAAGGCATCGCTGGGCAAGGAGCCCATGGCCAAGATGGGAGAAGGCCAGTCACTGCCGTCTGATGCG GCGGCCGCGTCGTCATCCCAGATACCCAAGAGCCATGTAGAGCCATTTGTTGCCCCAGAACCCCAGTCTATGGGC CGCAGAGGTCGCGGTGGCAGGACCGCAGACAAGGGCAAAGCTGCGGAGATTCCCAATGCGCTTGTCATGAATCCA CCAGTGATTCTCAAAAAGAAAAGCGAATACCAAGCGACAGAAGCGACTTTGGGCACGCACTCACCTTTTCATGAC AAGACTGCCAATGGAAGTGCAACTTCTAGTGCCTCTGCCAACCCAAGAATCAATGGCGGGGGAAAGGCGCCATCA ATGCACAAGAAGACAGCAACAGTCACAGCTGGAGCGACGCGTGCCTTTGTCAAGAATGTCAGCTCTTCCCAGGGC GTTACCGAAGCCTCTCTGCGCCAGGCCCTGGAAGCTTTTGGGGCCGTCACGTCGATCGAGGTTGACAAGCGCAAG AACTTTGCCTACGTTGACTTTGCACACCATCAAGGTTTCCTTGGAGCGGTGAATGCCAGTCCGGTGCAAGTGGGT CAGACCATAGTCCAGATTGTCGAGCGCAAGGACAAGAGGCCTCTAGGCAGTGGACCTGTGGCTAGCTCTGGCGGA TCAGACAGGGGATATGCGCGTGGGCGACGCGGACGTGGAGGTGGAGGCGGCAGCAGCAGCAAGGCCAATGGCGTC ACAAATGGCGTGGCCATTTTGTCTTCTACTAACTCTGGTGGGACTGGATGA
Gene	>OphauB2|7473 ATGTCGGCTTCCGCACCCCAGGCCATCTCGCGACGGCCGAATGGAGCGCCTATGGCCTCAATATCGCAGCCGAGA GAGACCCTGAACAGAGCGCCAGCCTCTTTTTCCCGAGCCTCCGTCGCCTCCAACAAGACGCCGCAGGCCAAAGCG TCCAATGAGCCCCAGCCCCAGCGCCCTACTGTCAAGGGCAAAGGCTCGCCAGACACAGCCAAAGTCGGTTTGTTG GCCTGCCATGATGCATCATTTATCTGACCAGTTTCCTTTGTTCAGAACGCAACTACTGCCGACGGTGCTTCCAGG CGAGCAAAAACCAAGGCCGCTATTGAGGGCGCAAAGGCTGTCATACGACGCCTCCCCCCCGGCATGACGGAAGCC GAGTTCACTTCCATCCTGGGATCAGAATACGCCCTCAACCAAGGCAAAGTCGACTGGTTTTCCTATCGCTCCGGC AAGGTGTCTGTAGAGTACGTCTTGCCCCATGGATTAGCCCTGTTGCCCTCGGCTGCTGACCGACTGCAATGCAAA GCCCTTCAAAGCCGTCGCGTCCATCTCGAGCTTATCTTCATATTATGTGCAAGGACGACATCATTCCGCTTTGTC AAATCGTGCGTTCAGCTACTTGGGAGGATGCCAGGTCAACTTTTACAAGCCCCTGTCTCATCGGTCCCCCCGTCC TCGACTTTGCTACGTACAAGCGCATTCCTAGTACCAAGTCACGCTCCGACCCCAGACAGGGAACTATTGACCAGG ACCAGGAATTCATGGACTTTTTAGAGGAACTCGCCAATCCAACCCCATCCAAGGCAAGTGTCCAAGGCGACGATG CTGACGAGGCGGCCAAGGATGAAGCCAAGGTGACAACGACGCCATTGGTAGAGTATCTCAAAGAGAAATCTGCCA ACAAGGGCAAAGATCATGCGTCTAGCAAGGGCGCCAAGACGTCTTTGGCCAAGGGCAAGGGTGTTGCAAAAGAGG AAGACTTGATCAAGAAAAGGACCCGAGAAGCCAAACCAGACGGCAAAATCAGCGATCCAGTCAAGATTCTAACCA AGAAAACCCCGACAGAGATGGCAGCTGACGCAGCCAAGAATGTGGCAGGTCAGCTGAGCGGCACTGCCGCAACGG ATGCCCCCAAGAGCCGCCGCGCTGGAATTGCTGCTGCGGCCAGAATCTTGCAGCGAGACTTGGGCCTGAGCCCTG GCAGTGCTCACCGGCGTGCTAGGCACGACGCCGCGAAAGCAGATGCCGACACAAAGGCATCGCTGGGCAAGGAGC CCATGGCCAAGATGGGAGAAGGCCAGTCACTGCCGTCTGATGCGGCGGCCGCGTCGTCATCCCAGATACCCAAGA GCCATGTAGAGCCATTTGTTGCCCCAGAACCCCAGTCTATGGGCCGCAGAGGTCGCGGTGGCAGGACCGCAGACA AGGGCAAAGCTGCGGAGATTCCCAATGCGCTTGTCATGAATCCACCAGTGATTCTCAAAAAGAAAAGCGAATACC AAGCGACAGAAGCGACTTTGGGCACGCACTCACCTTTTCATGACAAGACTGCCAATGGAAGTGCAACTTCTAGTG CCTCTGCCAACCCAAGAATCAATGGCGGGGGAAAGGCGCCATCAATGCACAAGAAGACAGCAACAGTCACAGCTG GAGCGACGCGTGCCTTTGTCAAGAATGTCAGCTCTTCCCAGGGCGTTACCGAAGCCTCTCTGCGCCAGGCCCTGG AAGCTTTTGGGGCCGTCACGTCGATCGAGGTTGACAAGCGCAAGAACTTTGCCTACGTTGACTTTGCACACCATC AAGGTTTCCTTGGAGCGGTGAATGCCAGTCCGGTGCAAGTGGGTCAGACCATAGTCCAGATTGTCGAGCGCAAGG ACAAGAGGCCTCTAGGCAGTGGACCTGTGGCTAGCTCTGGCGGATCAGACAGGGGATATGCGCGTGGGCGACGCG GACGTGGAGGTGGAGGCGGCAGCAGCAGCAAGGCCAATGGCGTCACAAATGGCGTGGCCATTTTGTCTTCTACTA ACTCTGGTGGGACTGGATGA