Fungal Genomics

at Utrecht University

General Properties

Protein IDOphauB2|7471
Gene name
LocationContig_8:197978..199157
Strand-
Gene length (bp)1179
Transcript length (bp)1179
Coding sequence length (bp)1179
Protein length (aa) 393

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF02475 Met_10 Met-10+ like-protein 1.5E-06 162 248

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q09832|TYW2_SCHPO tRNA wybutosine-synthesizing protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=trm12 PE=3 SV=1 42 384 7.0E-64
sp|Q04235|TYW2_YEAST tRNA wybutosine-synthesizing protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TRM12 PE=1 SV=1 38 389 4.0E-44
sp|Q8W4K1|TYW23_ARATH tRNA wybutosine-synthesizing protein 2/3/4 OS=Arabidopsis thaliana GN=At4g04670 PE=2 SV=1 36 384 4.0E-15
sp|Q0P466|TYW2_DANRE tRNA wybutosine-synthesizing protein 2 homolog OS=Danio rerio GN=trmt12 PE=2 SV=1 157 384 3.0E-11
sp|Q8H4D4|TYW23_ORYSJ tRNA wybutosine-synthesizing protein 2/3/4 OS=Oryza sativa subsp. japonica GN=Os07g0515000 PE=2 SV=1 36 384 8.0E-11
[Show all]
[Show less]
Swissprot ID Swissprot Description Start End E-value
sp|Q09832|TYW2_SCHPO tRNA wybutosine-synthesizing protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=trm12 PE=3 SV=1 42 384 7.0E-64
sp|Q04235|TYW2_YEAST tRNA wybutosine-synthesizing protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TRM12 PE=1 SV=1 38 389 4.0E-44
sp|Q8W4K1|TYW23_ARATH tRNA wybutosine-synthesizing protein 2/3/4 OS=Arabidopsis thaliana GN=At4g04670 PE=2 SV=1 36 384 4.0E-15
sp|Q0P466|TYW2_DANRE tRNA wybutosine-synthesizing protein 2 homolog OS=Danio rerio GN=trmt12 PE=2 SV=1 157 384 3.0E-11
sp|Q8H4D4|TYW23_ORYSJ tRNA wybutosine-synthesizing protein 2/3/4 OS=Oryza sativa subsp. japonica GN=Os07g0515000 PE=2 SV=1 36 384 8.0E-11
sp|Q4V8B8|TYW2_RAT tRNA wybutosine-synthesizing protein 2 homolog OS=Rattus norvegicus GN=Trmt12 PE=2 SV=2 156 333 9.0E-11
sp|Q8BG71|TYW2_MOUSE tRNA wybutosine-synthesizing protein 2 homolog OS=Mus musculus GN=Trmt12 PE=2 SV=1 156 333 2.0E-10
sp|Q4R3U8|TYW2_MACFA tRNA wybutosine-synthesizing protein 2 homolog OS=Macaca fascicularis GN=TRMT12 PE=2 SV=2 156 333 2.0E-09
sp|Q53H54|TYW2_HUMAN tRNA wybutosine-synthesizing protein 2 homolog OS=Homo sapiens GN=TRMT12 PE=1 SV=1 156 384 5.0E-09
sp|Q58D65|TYW2_BOVIN tRNA wybutosine-synthesizing protein 2 homolog OS=Bos taurus GN=TRMT12 PE=2 SV=1 156 384 9.0E-09
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GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 11 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >OphauB2|7471
MPRPHPRENPIQTAVEKWIATLPGRQSKHEWPAWRQELIKTAPKRFTIYEPMALLPASSLQSEIWEAELAQQDAE
TLDVLWRLILEELSRHGKKQLQLTHLAVNEGIPLHSAQAQDEENTRRSPSRLRVLFGDFGPAQLSEQAASLDSKQ
LDAALWVSTRQNGIMQTWAPRWTMFSRGNVKEKARLLTFARAGQCNEPLGEEWAVDLYAGIGYFAFCYAALGFRV
LCWEINPWSVQGLKRGAHTNGWSVHVVQGEELLRPLNQVLAGKERIIVFLESNQQARRRIDELQHAGIARNLSHV
NCGLLPTSAATWQAAWHMTRLSCDSWLHLHENIGVHDIESRRQSVSQLFDSWASSPESHRVSTVYPVELIKTFAP
GVWHCVLDVHITKSMHQ*
Coding >OphauB2|7471
ATGCCACGCCCGCATCCACGGGAGAATCCAATCCAAACCGCTGTCGAGAAATGGATTGCAACGCTCCCAGGACGG
CAATCCAAGCATGAATGGCCAGCATGGCGACAGGAGCTGATCAAGACGGCGCCAAAGCGCTTCACCATTTACGAG
CCCATGGCTTTGCTGCCCGCCAGCAGTCTCCAGAGCGAGATATGGGAAGCAGAACTGGCGCAACAAGATGCAGAG
ACACTGGATGTGCTGTGGCGGCTCATACTGGAGGAACTGTCGCGCCATGGAAAGAAGCAGCTGCAACTTACACAC
CTGGCAGTCAATGAGGGCATTCCGTTGCACAGCGCGCAAGCTCAAGACGAAGAAAATACGCGACGCAGTCCAAGT
CGACTTCGAGTCCTGTTTGGAGACTTTGGCCCGGCACAGCTATCGGAGCAAGCAGCATCGCTGGATAGCAAACAG
CTGGATGCAGCGCTATGGGTCTCGACGCGACAAAACGGCATCATGCAGACTTGGGCGCCGCGCTGGACAATGTTT
AGCCGCGGCAACGTCAAGGAAAAAGCCAGGCTTCTAACCTTTGCCCGCGCTGGCCAGTGCAACGAGCCTCTAGGC
GAGGAATGGGCCGTCGACTTGTATGCCGGCATTGGATACTTTGCCTTTTGCTACGCTGCGCTTGGCTTCAGGGTA
TTGTGCTGGGAGATTAATCCCTGGAGCGTCCAAGGCTTGAAACGAGGCGCGCACACAAATGGCTGGAGTGTCCAC
GTCGTTCAAGGCGAGGAGTTGCTGCGGCCGCTCAATCAAGTACTAGCGGGCAAGGAGCGCATCATAGTCTTCCTC
GAGAGCAACCAACAGGCGCGGCGACGCATAGACGAGTTGCAGCACGCTGGCATTGCGCGAAACTTGAGCCACGTC
AACTGCGGCTTGCTGCCCACGAGCGCGGCGACTTGGCAGGCAGCATGGCACATGACGCGACTTAGTTGCGACTCG
TGGCTTCACTTGCACGAGAATATTGGGGTCCATGATATTGAGTCGAGGCGACAGTCTGTCAGTCAACTCTTTGAC
AGCTGGGCGTCGTCTCCGGAGAGCCACAGAGTTTCAACAGTCTACCCTGTCGAGTTGATAAAGACATTTGCGCCA
GGCGTCTGGCACTGCGTCTTGGATGTGCACATTACCAAATCTATGCACCAGTAA
Transcript >OphauB2|7471
ATGCCACGCCCGCATCCACGGGAGAATCCAATCCAAACCGCTGTCGAGAAATGGATTGCAACGCTCCCAGGACGG
CAATCCAAGCATGAATGGCCAGCATGGCGACAGGAGCTGATCAAGACGGCGCCAAAGCGCTTCACCATTTACGAG
CCCATGGCTTTGCTGCCCGCCAGCAGTCTCCAGAGCGAGATATGGGAAGCAGAACTGGCGCAACAAGATGCAGAG
ACACTGGATGTGCTGTGGCGGCTCATACTGGAGGAACTGTCGCGCCATGGAAAGAAGCAGCTGCAACTTACACAC
CTGGCAGTCAATGAGGGCATTCCGTTGCACAGCGCGCAAGCTCAAGACGAAGAAAATACGCGACGCAGTCCAAGT
CGACTTCGAGTCCTGTTTGGAGACTTTGGCCCGGCACAGCTATCGGAGCAAGCAGCATCGCTGGATAGCAAACAG
CTGGATGCAGCGCTATGGGTCTCGACGCGACAAAACGGCATCATGCAGACTTGGGCGCCGCGCTGGACAATGTTT
AGCCGCGGCAACGTCAAGGAAAAAGCCAGGCTTCTAACCTTTGCCCGCGCTGGCCAGTGCAACGAGCCTCTAGGC
GAGGAATGGGCCGTCGACTTGTATGCCGGCATTGGATACTTTGCCTTTTGCTACGCTGCGCTTGGCTTCAGGGTA
TTGTGCTGGGAGATTAATCCCTGGAGCGTCCAAGGCTTGAAACGAGGCGCGCACACAAATGGCTGGAGTGTCCAC
GTCGTTCAAGGCGAGGAGTTGCTGCGGCCGCTCAATCAAGTACTAGCGGGCAAGGAGCGCATCATAGTCTTCCTC
GAGAGCAACCAACAGGCGCGGCGACGCATAGACGAGTTGCAGCACGCTGGCATTGCGCGAAACTTGAGCCACGTC
AACTGCGGCTTGCTGCCCACGAGCGCGGCGACTTGGCAGGCAGCATGGCACATGACGCGACTTAGTTGCGACTCG
TGGCTTCACTTGCACGAGAATATTGGGGTCCATGATATTGAGTCGAGGCGACAGTCTGTCAGTCAACTCTTTGAC
AGCTGGGCGTCGTCTCCGGAGAGCCACAGAGTTTCAACAGTCTACCCTGTCGAGTTGATAAAGACATTTGCGCCA
GGCGTCTGGCACTGCGTCTTGGATGTGCACATTACCAAATCTATGCACCAGTAA
Gene >OphauB2|7471
ATGCCACGCCCGCATCCACGGGAGAATCCAATCCAAACCGCTGTCGAGAAATGGATTGCAACGCTCCCAGGACGG
CAATCCAAGCATGAATGGCCAGCATGGCGACAGGAGCTGATCAAGACGGCGCCAAAGCGCTTCACCATTTACGAG
CCCATGGCTTTGCTGCCCGCCAGCAGTCTCCAGAGCGAGATATGGGAAGCAGAACTGGCGCAACAAGATGCAGAG
ACACTGGATGTGCTGTGGCGGCTCATACTGGAGGAACTGTCGCGCCATGGAAAGAAGCAGCTGCAACTTACACAC
CTGGCAGTCAATGAGGGCATTCCGTTGCACAGCGCGCAAGCTCAAGACGAAGAAAATACGCGACGCAGTCCAAGT
CGACTTCGAGTCCTGTTTGGAGACTTTGGCCCGGCACAGCTATCGGAGCAAGCAGCATCGCTGGATAGCAAACAG
CTGGATGCAGCGCTATGGGTCTCGACGCGACAAAACGGCATCATGCAGACTTGGGCGCCGCGCTGGACAATGTTT
AGCCGCGGCAACGTCAAGGAAAAAGCCAGGCTTCTAACCTTTGCCCGCGCTGGCCAGTGCAACGAGCCTCTAGGC
GAGGAATGGGCCGTCGACTTGTATGCCGGCATTGGATACTTTGCCTTTTGCTACGCTGCGCTTGGCTTCAGGGTA
TTGTGCTGGGAGATTAATCCCTGGAGCGTCCAAGGCTTGAAACGAGGCGCGCACACAAATGGCTGGAGTGTCCAC
GTCGTTCAAGGCGAGGAGTTGCTGCGGCCGCTCAATCAAGTACTAGCGGGCAAGGAGCGCATCATAGTCTTCCTC
GAGAGCAACCAACAGGCGCGGCGACGCATAGACGAGTTGCAGCACGCTGGCATTGCGCGAAACTTGAGCCACGTC
AACTGCGGCTTGCTGCCCACGAGCGCGGCGACTTGGCAGGCAGCATGGCACATGACGCGACTTAGTTGCGACTCG
TGGCTTCACTTGCACGAGAATATTGGGGTCCATGATATTGAGTCGAGGCGACAGTCTGTCAGTCAACTCTTTGAC
AGCTGGGCGTCGTCTCCGGAGAGCCACAGAGTTTCAACAGTCTACCCTGTCGAGTTGATAAAGACATTTGCGCCA
GGCGTCTGGCACTGCGTCTTGGATGTGCACATTACCAAATCTATGCACCAGTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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