© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauB2|7450 |
| Gene name | |
| Location | Contig_8:159514..161290 |
| Strand | + |
| Gene length (bp) | 1776 |
| Transcript length (bp) | 1650 |
| Coding sequence length (bp) | 1650 |
| Protein length (aa) | 550 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03972 | MmgE_PrpD | MmgE/PrpD N-terminal domain | 5.9E-86 | 71 | 327 |
| PF19305 | MmgE_PrpD_C | MmgE/PrpD C-terminal domain | 1.5E-46 | 344 | 521 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q6C354|PRPD_YARLI | 2-methylcitrate dehydratase, mitochondrial OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=PDH1 PE=1 SV=1 | 66 | 544 | 0.0E+00 |
| sp|P77243|PRPD_ECOLI | 2-methylcitrate dehydratase OS=Escherichia coli (strain K12) GN=prpD PE=1 SV=3 | 64 | 543 | 0.0E+00 |
| sp|Q8X693|PRPD_ECO57 | 2-methylcitrate dehydratase OS=Escherichia coli O157:H7 GN=prpD PE=3 SV=3 | 64 | 543 | 0.0E+00 |
| sp|P74840|PRPD_SALTY | 2-methylcitrate dehydratase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=prpD PE=1 SV=2 | 65 | 543 | 0.0E+00 |
| sp|Q937N6|PRPD_CUPNE | 2-methylcitrate dehydratase OS=Cupriavidus necator GN=prpD PE=3 SV=1 | 57 | 543 | 0.0E+00 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q6C354|PRPD_YARLI | 2-methylcitrate dehydratase, mitochondrial OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=PDH1 PE=1 SV=1 | 66 | 544 | 0.0E+00 |
| sp|P77243|PRPD_ECOLI | 2-methylcitrate dehydratase OS=Escherichia coli (strain K12) GN=prpD PE=1 SV=3 | 64 | 543 | 0.0E+00 |
| sp|Q8X693|PRPD_ECO57 | 2-methylcitrate dehydratase OS=Escherichia coli O157:H7 GN=prpD PE=3 SV=3 | 64 | 543 | 0.0E+00 |
| sp|P74840|PRPD_SALTY | 2-methylcitrate dehydratase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=prpD PE=1 SV=2 | 65 | 543 | 0.0E+00 |
| sp|Q937N6|PRPD_CUPNE | 2-methylcitrate dehydratase OS=Cupriavidus necator GN=prpD PE=3 SV=1 | 57 | 543 | 0.0E+00 |
| sp|Q8Z903|PRPD_SALTI | 2-methylcitrate dehydratase OS=Salmonella typhi GN=prpD PE=3 SV=1 | 65 | 543 | 0.0E+00 |
| sp|Q12428|PRPD_YEAST | Probable 2-methylcitrate dehydratase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PDH1 PE=1 SV=1 | 53 | 541 | 0.0E+00 |
| sp|P45859|PRPD_BACSU | 2-methylcitrate dehydratase OS=Bacillus subtilis (strain 168) GN=prpD PE=2 SV=3 | 66 | 543 | 0.0E+00 |
| sp|Q54IJ0|PRPD_DICDI | Probable 2-methylcitrate dehydratase OS=Dictyostelium discoideum GN=prpD PE=2 SV=1 | 64 | 543 | 2.0E-149 |
| sp|Q8NSH9|PRPD1_CORGL | 2-methylcitrate dehydratase 1 OS=Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 / LMG 3730 / NCIMB 10025) GN=prpD1 PE=3 SV=1 | 125 | 489 | 3.0E-23 |
| sp|Q8NSL3|PRPD2_CORGL | 2-methylcitrate dehydratase 2 OS=Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 / LMG 3730 / NCIMB 10025) GN=prpD2 PE=2 SV=1 | 126 | 489 | 3.0E-19 |
| sp|H8F0D6|PRPD_MYCTE | 2-methylcitrate dehydratase OS=Mycobacterium tuberculosis (strain ATCC 35801 / TMC 107 / Erdman) GN=ERDMAN_1266 PE=1 SV=1 | 123 | 489 | 7.0E-17 |
| sp|O06582|PRPD_MYCTU | 2-methylcitrate dehydratase OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) GN=prpD PE=1 SV=1 | 123 | 489 | 7.0E-17 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 27 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauB2|7450 MSAARQSLRAASKHLRLASPIAFARCVPLTAAPRPNSHPSAGSPFSTLAPRRSGASTMARQAAQYDAEISDIASY VANYKIDSQLAFDTARWVFLDTLGCGLEGLRFKECSKLLGPIVPGTIVPNGTKVPGTPFVLDPVNGAFNIGAMIR WLDFNDCWLAAEWGHPSDNLGAILAVADWVNRTNKAGGTLAGGRLFTIRDVLEAMIKAHEIQGCLALLNSFNRVG LDHVVLVKVASTAVVAKMLNLGQTQIADAVTQAWADGQSLRTYRHSPNTMSRKSWAAGDACQRAVNLALKVMKGE QGIPTVLSAPVWGFYDVLFKGKKFEFQRPYGSYVMENVLFKVSYPAEFHSQTAVEASEKIHHQLKSMGKTAADIK AITCRTHEACMRIIDKQFKPMDNFADRDHCIQYMCSVMLVFGRLEATDYVDGSEAATSELVDSLRKKIKCVEDAQ YTKDYHDPKLRTISNALTVELNDGTKLDEVAVEAPLGHRLRREEAKPIILAKYKRHLGPHFSDAKVKELVELGVD SKRLESMAVDDYVDMYAVKQSRFL* |
| Coding | >OphauB2|7450 ATGTCTGCTGCCCGCCAAAGCCTGCGCGCCGCCTCGAAGCATCTGCGTTTGGCCTCGCCCATTGCCTTTGCTCGC TGTGTCCCGCTGACAGCTGCTCCGCGGCCCAATTCGCATCCCTCGGCCGGCTCGCCCTTTTCAACACTTGCCCCC CGCCGGTCAGGAGCTTCCACCATGGCTCGGCAAGCTGCCCAGTACGATGCCGAGATCAGCGACATTGCTAGCTAC GTGGCCAATTACAAAATCGACTCTCAATTGGCCTTCGACACTGCCCGATGGGTCTTTCTCGATACCCTCGGCTGC GGCCTCGAGGGCCTGCGCTTCAAGGAGTGCTCCAAGCTGCTTGGCCCAATAGTCCCTGGCACCATAGTTCCCAAC GGGACCAAGGTTCCCGGCACCCCCTTTGTCCTCGATCCTGTCAACGGCGCCTTCAACATTGGCGCCATGATCCGC TGGCTCGACTTCAACGACTGCTGGCTCGCAGCTGAATGGGGCCACCCCTCGGACAACTTGGGCGCCATCCTAGCC GTTGCCGACTGGGTCAATCGCACCAACAAGGCCGGCGGAACCCTTGCTGGTGGGCGCCTCTTTACCATTCGTGAC GTGCTCGAGGCCATGATCAAGGCACATGAGATTCAGGGCTGTCTTGCCTTGCTCAATTCCTTCAATCGCGTTGGC CTCGATCATGTGGTGCTCGTCAAGGTGGCCAGTACTGCCGTAGTCGCAAAAATGCTCAACCTCGGCCAGACCCAG ATAGCCGACGCTGTCACCCAGGCTTGGGCTGATGGCCAGAGCCTGCGCACCTATCGCCACTCTCCCAACACCATG TCTCGGAAATCATGGGCTGCTGGCGATGCCTGCCAGCGCGCCGTCAATCTAGCCCTCAAGGTGATGAAGGGCGAG CAGGGCATCCCCACCGTCCTCTCCGCTCCCGTTTGGGGCTTTTACGACGTGCTCTTCAAGGGCAAGAAATTTGAG TTTCAACGCCCCTACGGCAGTTATGTCATGGAAAATGTTCTCTTCAAAGTTTCCTACCCAGCCGAATTTCATTCC CAGACTGCTGTGGAAGCTTCTGAGAAGATTCATCACCAGCTCAAGTCCATGGGCAAGACTGCTGCTGACATCAAG GCCATCACCTGCCGTACTCACGAGGCCTGCATGCGCATCATTGATAAGCAATTCAAGCCAATGGACAACTTTGCT GACCGCGACCATTGCATCCAATACATGTGCTCTGTCATGCTAGTCTTTGGGCGCCTCGAGGCCACGGATTATGTC GATGGCAGTGAAGCGGCTACGTCGGAGCTTGTCGACTCGCTACGAAAGAAGATCAAGTGCGTTGAAGATGCTCAG TACACCAAGGATTATCATGACCCCAAGCTGCGAACCATTTCCAATGCCTTGACGGTTGAGCTCAATGACGGTACT AAGCTTGACGAGGTGGCTGTCGAGGCGCCTTTGGGCCATCGCCTACGGCGCGAGGAAGCAAAGCCCATCATCCTC GCCAAGTATAAGCGTCACCTGGGGCCACACTTCTCCGACGCCAAGGTTAAGGAGCTTGTTGAGCTGGGCGTTGAT AGCAAGCGTCTCGAGTCCATGGCGGTAGACGACTATGTCGACATGTATGCTGTCAAGCAAAGTCGCTTCTTGTAA |
| Transcript | >OphauB2|7450 ATGTCTGCTGCCCGCCAAAGCCTGCGCGCCGCCTCGAAGCATCTGCGTTTGGCCTCGCCCATTGCCTTTGCTCGC TGTGTCCCGCTGACAGCTGCTCCGCGGCCCAATTCGCATCCCTCGGCCGGCTCGCCCTTTTCAACACTTGCCCCC CGCCGGTCAGGAGCTTCCACCATGGCTCGGCAAGCTGCCCAGTACGATGCCGAGATCAGCGACATTGCTAGCTAC GTGGCCAATTACAAAATCGACTCTCAATTGGCCTTCGACACTGCCCGATGGGTCTTTCTCGATACCCTCGGCTGC GGCCTCGAGGGCCTGCGCTTCAAGGAGTGCTCCAAGCTGCTTGGCCCAATAGTCCCTGGCACCATAGTTCCCAAC GGGACCAAGGTTCCCGGCACCCCCTTTGTCCTCGATCCTGTCAACGGCGCCTTCAACATTGGCGCCATGATCCGC TGGCTCGACTTCAACGACTGCTGGCTCGCAGCTGAATGGGGCCACCCCTCGGACAACTTGGGCGCCATCCTAGCC GTTGCCGACTGGGTCAATCGCACCAACAAGGCCGGCGGAACCCTTGCTGGTGGGCGCCTCTTTACCATTCGTGAC GTGCTCGAGGCCATGATCAAGGCACATGAGATTCAGGGCTGTCTTGCCTTGCTCAATTCCTTCAATCGCGTTGGC CTCGATCATGTGGTGCTCGTCAAGGTGGCCAGTACTGCCGTAGTCGCAAAAATGCTCAACCTCGGCCAGACCCAG ATAGCCGACGCTGTCACCCAGGCTTGGGCTGATGGCCAGAGCCTGCGCACCTATCGCCACTCTCCCAACACCATG TCTCGGAAATCATGGGCTGCTGGCGATGCCTGCCAGCGCGCCGTCAATCTAGCCCTCAAGGTGATGAAGGGCGAG CAGGGCATCCCCACCGTCCTCTCCGCTCCCGTTTGGGGCTTTTACGACGTGCTCTTCAAGGGCAAGAAATTTGAG TTTCAACGCCCCTACGGCAGTTATGTCATGGAAAATGTTCTCTTCAAAGTTTCCTACCCAGCCGAATTTCATTCC CAGACTGCTGTGGAAGCTTCTGAGAAGATTCATCACCAGCTCAAGTCCATGGGCAAGACTGCTGCTGACATCAAG GCCATCACCTGCCGTACTCACGAGGCCTGCATGCGCATCATTGATAAGCAATTCAAGCCAATGGACAACTTTGCT GACCGCGACCATTGCATCCAATACATGTGCTCTGTCATGCTAGTCTTTGGGCGCCTCGAGGCCACGGATTATGTC GATGGCAGTGAAGCGGCTACGTCGGAGCTTGTCGACTCGCTACGAAAGAAGATCAAGTGCGTTGAAGATGCTCAG TACACCAAGGATTATCATGACCCCAAGCTGCGAACCATTTCCAATGCCTTGACGGTTGAGCTCAATGACGGTACT AAGCTTGACGAGGTGGCTGTCGAGGCGCCTTTGGGCCATCGCCTACGGCGCGAGGAAGCAAAGCCCATCATCCTC GCCAAGTATAAGCGTCACCTGGGGCCACACTTCTCCGACGCCAAGGTTAAGGAGCTTGTTGAGCTGGGCGTTGAT AGCAAGCGTCTCGAGTCCATGGCGGTAGACGACTATGTCGACATGTATGCTGTCAAGCAAAGTCGCTTCTTGTAA |
| Gene | >OphauB2|7450 ATGTCTGCTGCCCGCCAAAGCCTGCGCGCCGCCTCGAAGCATCTGCGTTTGGCCTCGCCCATTGCCTTTGCTCGC TGTGTCCCGCTGACAGCTGCTCCGCGGCCCAATTCGCATCCCTCGGCCGGCTCGCCCTTTTCAACACTTGCCCCC CGCCGGTCAGGAGCTTCCACCATGGCTCGGCAAGCTGCCCAGTACGATGCCGAGATCAGCGACATTGCTAGCTAC GTGGCCAATTACAAAATCGACTCTCAATTGGCCGTCAGTCGCCCCCGCGTTTTGGGCGCGCTCAAGAGCCTCGCC TTGCCCTTGCTGACCCCGCCGCTGTCTAGTTCGACACTGCCCGATGGGTCTTTCTCGATACCCTCGGCTGCGGCC TCGAGGGCCTGCGCTTCAAGGAGTGCTCCAAGCTGCTTGGCCCAATAGTCCCTGGCACCATAGTTCCCAACGGGA CCAAGGTTCCCGGCACCCCCTTTGTCCTCGATCCTGTCAACGGCGCCTTCAACATTGGCGCCATGATCCGCTGGC TCGACTTCAACGACTGCTGGCTCGCAGCTGAATGGGGCCACCCCTCGGACAACTTGGGCGCCATCCTAGCCGTTG CCGACTGGGTCAATCGCACCAACAAGGCCGGCGGAACCCTTGCTGGTGGGCGCCTCTTTACCATTCGTGACGTGC TCGAGGCCATGATCAAGGCACATGAGATTCAGGGCTGTCTTGCCTTGCTCAATTCCTTCAATCGCGTTGGCCTCG ATCATGTGGTGCTCGTCAAGGTGGCCAGTACTGCCGTAGTCGCAAAAATGCTCAACCTCGGCCAGACCCAGATAG CCGACGCTGTCACCCAGGCTTGGGCTGATGGCCAGAGCCTGCGCACCTATCGCCACTCTCCCAACACCATGTCTC GGAAATCATGGGCTGCTGGCGATGCCTGCCAGCGCGCCGTCAATCTAGCCCTCAAGGTGATGAAGGGCGAGCAGG GCATCCCCACCGTCCTCTCCGCTCCCGTTTGGGGCTTTTACGACGTGCTCTTCAAGGGCAAGAAATTTGAGTTTC AACGCCCCTACGGCAGTTATGTCATGGAAAATGTTCTCTTCAAAGTTTCCTACCCAGGTATGTCTGCTGCCTCCA CCTGCAACGTCACTCGACAGCTCACAAGTCTCTGCAGCCGAATTTCATTCCCAGACTGCTGTGGAAGCTTCTGAG AAGATTCATCACCAGCTCAAGTCCATGGGCAAGACTGCTGCTGACATCAAGGCCATCACCTGCCGTACTCACGAG GCCTGCATGCGCATCATTGATAAGCAATTCAAGCCAATGGACAACTTTGCTGACCGCGACCATTGCATCCAATAC ATGTGCTCTGTCATGCTAGTCTTTGGGCGCCTCGAGGCCACGGATTATGTCGATGGCAGTGAAGCGGCTACGTCG GAGCTTGTCGACTCGCTACGAAAGAAGATCAAGTGCGTTGAAGATGCTCAGTACACCAAGGATTATCATGACCCC AAGCTGCGAACCATTTCCAATGCCTTGACGGTTGAGCTCAATGACGGTACTAAGCTTGACGAGGTGGCTGTCGAG GCGCCTTTGGGCCATCGCCTACGGCGCGAGGAAGCAAAGCCCATCATCCTCGCCAAGTATAAGCGTCACCTGGGG CCACACTTCTCCGACGCCAAGGTTAAGGAGCTTGTTGAGCTGGGCGTTGATAGCAAGCGTCTCGAGTCCATGGCG GTAGACGACTATGTCGACATGTATGCTGTCAAGCAAAGTCGCTTCTTGTAA |