Fungal Genomics

at Utrecht University

General Properties

Protein IDOphauB2|743
Gene name
LocationContig_115:16477..18156
Strand-
Gene length (bp)1679
Transcript length (bp)1368
Coding sequence length (bp)1368
Protein length (aa) 456

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF10602 RPN7 26S proteasome subunit RPN7 2.1E-34 97 253
PF01399 PCI PCI domain 1.0E-13 272 371

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q5BD89|CSN1_EMENI COP9 signalosome complex subunit 1 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=csnA PE=1 SV=2 22 411 2.0E-113
sp|Q7RXQ1|CSN1_NEUCR COP9 signalosome complex subunit 1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=csn-1 PE=1 SV=1 9 413 8.0E-113
sp|Q99LD4|CSN1_MOUSE COP9 signalosome complex subunit 1 OS=Mus musculus GN=Gps1 PE=1 SV=1 22 401 7.0E-69
sp|P97834|CSN1_RAT COP9 signalosome complex subunit 1 OS=Rattus norvegicus GN=Gps1 PE=1 SV=1 22 401 1.0E-68
sp|Q6NRT5|CSN1_XENLA COP9 signalosome complex subunit 1 OS=Xenopus laevis GN=csn1 PE=2 SV=1 22 401 7.0E-68
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Swissprot ID Swissprot Description Start End E-value
sp|Q5BD89|CSN1_EMENI COP9 signalosome complex subunit 1 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=csnA PE=1 SV=2 22 411 2.0E-113
sp|Q7RXQ1|CSN1_NEUCR COP9 signalosome complex subunit 1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=csn-1 PE=1 SV=1 9 413 8.0E-113
sp|Q99LD4|CSN1_MOUSE COP9 signalosome complex subunit 1 OS=Mus musculus GN=Gps1 PE=1 SV=1 22 401 7.0E-69
sp|P97834|CSN1_RAT COP9 signalosome complex subunit 1 OS=Rattus norvegicus GN=Gps1 PE=1 SV=1 22 401 1.0E-68
sp|Q6NRT5|CSN1_XENLA COP9 signalosome complex subunit 1 OS=Xenopus laevis GN=csn1 PE=2 SV=1 22 401 7.0E-68
sp|P45432|CSN1_ARATH COP9 signalosome complex subunit 1 OS=Arabidopsis thaliana GN=CSN1 PE=1 SV=2 12 405 7.0E-67
sp|Q13098|CSN1_HUMAN COP9 signalosome complex subunit 1 OS=Homo sapiens GN=GPS1 PE=1 SV=4 22 401 1.0E-66
sp|Q54QX3|CSN1_DICDI COP9 signalosome complex subunit 1 OS=Dictyostelium discoideum GN=csn1 PE=1 SV=1 27 414 9.0E-63
sp|Q9VVU5|CSN1_DROME COP9 signalosome complex subunit 1b OS=Drosophila melanogaster GN=CSN1b PE=2 SV=1 97 411 1.0E-59
sp|O94308|CSN1_SCHPO COP9 signalosome complex subunit 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=csn1 PE=1 SV=1 19 372 5.0E-33
sp|Q9GS00|CSN1_CAEEL COP9 signalosome complex subunit 1 OS=Caenorhabditis elegans GN=csn-1 PE=1 SV=1 220 363 2.0E-21
sp|Q8W425|PSMD6_ORYSJ 26S proteasome non-ATPase regulatory subunit 6 OS=Oryza sativa subsp. japonica GN=RPN7 PE=2 SV=1 95 377 8.0E-12
sp|Q93Y35|PSMD6_ARATH 26S proteasome non-ATPase regulatory subunit 6 homolog OS=Arabidopsis thaliana GN=RPN7 PE=1 SV=1 95 363 4.0E-11
sp|Q20585|PSMD6_CAEEL 26S proteasome non-ATPase regulatory subunit 6 OS=Caenorhabditis elegans GN=rpn-7 PE=3 SV=1 90 380 9.0E-10
sp|Q06103|RPN7_YEAST 26S proteasome regulatory subunit RPN7 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPN7 PE=1 SV=3 137 363 3.0E-08
sp|Q55C75|PSMD6_DICDI 26S proteasome non-ATPase regulatory subunit 6 OS=Dictyostelium discoideum GN=psmD6 PE=1 SV=1 97 386 8.0E-08
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GO

(None)

SignalP

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SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 69 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >OphauB2|743
MSASQAVHSFLQQFQNRGSIIVNEQPKFDLDLYLQNYCGRSRFDRLILIGTSCVPLCVDALQAAVSEAMTGRDVE
RYIKACQYLRSAAPGDVEGEVDEEWIQSMEIDNKLETQRLEDELKGYKNNLIKETIRMGHEDLGKHYQSIGDLYN
AMEAFTRMHKDVSTTKHIADCCLHISRVALQQRDWQIVLNHANRMAGQGSSEESATQAKSNILCGVALMCLGNEY
SDLISPSDIAIYGGLTALATMDRRELQQRVLENVSFRSFLEHEVHIRKAINFFINGRYPSCLSTLESVRSDLLLD
IYLQEHVQHLFPKIRSKCIEQYFIPYSNVTIQSLEAAFGRPDHDIESELATMIGQKSLKARIDTKQRLLFAESKD
VRGQMQAEALETAQQYEKEAKERLRRLNLIAAGLEVTGDAMGQAIESTGLVAGQSWPQHDDLYIQPPIASAASMH
AAVNF*
Coding >OphauB2|743
ATGAGTGCCTCTCAGGCGGTGCACAGTTTCTTGCAGCAATTCCAGAACCGAGGGTCCATTATTGTTAATGAGCAG
CCCAAGTTCGACCTCGACCTCTACCTCCAAAACTACTGTGGCCGTTCTCGATTCGACCGCCTGATTCTCATTGGC
ACCAGCTGCGTCCCGCTGTGTGTCGACGCGCTCCAAGCTGCCGTCAGCGAGGCAATGACTGGCCGCGACGTCGAG
CGGTACATCAAGGCATGCCAGTATCTTCGGTCGGCTGCACCTGGCGACGTTGAGGGTGAGGTGGACGAAGAGTGG
ATACAGAGTATGGAAATAGACAACAAGCTCGAGACACAACGCCTGGAGGATGAGCTCAAAGGCTACAAGAATAAC
CTCATCAAAGAGACCATTAGGATGGGACACGAGGATCTCGGCAAACATTATCAGAGCATTGGAGACCTATACAAT
GCTATGGAAGCATTCACGCGCATGCACAAGGATGTCAGCACCACAAAGCACATCGCTGACTGCTGTTTGCATATT
TCAAGAGTTGCCTTGCAACAACGGGACTGGCAAATCGTTCTGAACCACGCGAATAGGATGGCCGGACAGGGCAGC
TCCGAGGAGTCTGCAACACAGGCCAAAAGCAATATTCTATGTGGCGTCGCCTTGATGTGTCTGGGGAATGAATAC
TCGGACCTCATCAGCCCCAGCGATATTGCTATTTATGGCGGCCTTACCGCCCTAGCCACAATGGATAGGCGCGAG
CTGCAGCAGCGAGTCTTGGAAAACGTATCATTTCGCTCATTTCTCGAGCATGAGGTCCACATTCGCAAAGCAATC
AACTTCTTCATCAATGGCCGATATCCCAGCTGTCTGTCGACCCTCGAGTCTGTGCGGTCCGATCTTTTGCTTGAT
ATATATCTGCAAGAGCACGTTCAACATCTCTTCCCCAAGATCCGAAGCAAGTGCATTGAGCAGTACTTTATCCCC
TATAGCAATGTCACGATACAAAGCCTTGAAGCTGCCTTTGGCAGACCCGACCACGACATTGAGTCTGAGCTTGCA
ACCATGATTGGTCAGAAGTCACTCAAGGCGCGAATTGACACAAAGCAAAGGCTACTGTTTGCAGAATCCAAAGAT
GTGCGCGGACAAATGCAGGCGGAAGCTCTCGAGACAGCTCAGCAGTACGAAAAAGAAGCCAAGGAAAGACTGCGA
CGCCTCAATCTCATAGCTGCTGGACTCGAAGTCACGGGCGACGCGATGGGTCAAGCCATCGAGTCCACCGGCCTT
GTGGCGGGACAGTCCTGGCCGCAGCACGACGATCTGTATATTCAACCACCCATTGCCAGCGCAGCCTCTATGCAC
GCGGCGGTCAATTTCTAA
Transcript >OphauB2|743
ATGAGTGCCTCTCAGGCGGTGCACAGTTTCTTGCAGCAATTCCAGAACCGAGGGTCCATTATTGTTAATGAGCAG
CCCAAGTTCGACCTCGACCTCTACCTCCAAAACTACTGTGGCCGTTCTCGATTCGACCGCCTGATTCTCATTGGC
ACCAGCTGCGTCCCGCTGTGTGTCGACGCGCTCCAAGCTGCCGTCAGCGAGGCAATGACTGGCCGCGACGTCGAG
CGGTACATCAAGGCATGCCAGTATCTTCGGTCGGCTGCACCTGGCGACGTTGAGGGTGAGGTGGACGAAGAGTGG
ATACAGAGTATGGAAATAGACAACAAGCTCGAGACACAACGCCTGGAGGATGAGCTCAAAGGCTACAAGAATAAC
CTCATCAAAGAGACCATTAGGATGGGACACGAGGATCTCGGCAAACATTATCAGAGCATTGGAGACCTATACAAT
GCTATGGAAGCATTCACGCGCATGCACAAGGATGTCAGCACCACAAAGCACATCGCTGACTGCTGTTTGCATATT
TCAAGAGTTGCCTTGCAACAACGGGACTGGCAAATCGTTCTGAACCACGCGAATAGGATGGCCGGACAGGGCAGC
TCCGAGGAGTCTGCAACACAGGCCAAAAGCAATATTCTATGTGGCGTCGCCTTGATGTGTCTGGGGAATGAATAC
TCGGACCTCATCAGCCCCAGCGATATTGCTATTTATGGCGGCCTTACCGCCCTAGCCACAATGGATAGGCGCGAG
CTGCAGCAGCGAGTCTTGGAAAACGTATCATTTCGCTCATTTCTCGAGCATGAGGTCCACATTCGCAAAGCAATC
AACTTCTTCATCAATGGCCGATATCCCAGCTGTCTGTCGACCCTCGAGTCTGTGCGGTCCGATCTTTTGCTTGAT
ATATATCTGCAAGAGCACGTTCAACATCTCTTCCCCAAGATCCGAAGCAAGTGCATTGAGCAGTACTTTATCCCC
TATAGCAATGTCACGATACAAAGCCTTGAAGCTGCCTTTGGCAGACCCGACCACGACATTGAGTCTGAGCTTGCA
ACCATGATTGGTCAGAAGTCACTCAAGGCGCGAATTGACACAAAGCAAAGGCTACTGTTTGCAGAATCCAAAGAT
GTGCGCGGACAAATGCAGGCGGAAGCTCTCGAGACAGCTCAGCAGTACGAAAAAGAAGCCAAGGAAAGACTGCGA
CGCCTCAATCTCATAGCTGCTGGACTCGAAGTCACGGGCGACGCGATGGGTCAAGCCATCGAGTCCACCGGCCTT
GTGGCGGGACAGTCCTGGCCGCAGCACGACGATCTGTATATTCAACCACCCATTGCCAGCGCAGCCTCTATGCAC
GCGGCGGTCAATTTCTAA
Gene >OphauB2|743
ATGAGTGCCTCTCAGGCGGTGCACAGTTTCTTGCAGCAATTCCAGAACCGAGGGTCCATTATTGTTAATGGTTCG
GCTGCATTCAAAGCTATTTGCGTTTGCAGCACCTACTAACGTTTGCCCTCTACCAGAGCAGCCCAAGTTCGACCT
CGACCTCTACCTCCAAAACTACTGTGGTACGATTCTTTCACAGCCTCAATGGTGCAACTTTCTGATGTCTTTTGT
CTCCTCCAGGCCGTTCTCGATTCGACCGCCTGATTCTCATTGGCACCAGCTGCGTCCCGCTGTGTGTCGACGCGC
TCCAAGCTGCCGTCAGCGAGGCAATGACTGGCCGCGACGTCGAGCGGTACATCAAGGCATGCCAGTATCTTCGGT
CGGCTGCACCTGGCGACGTTGAGGGTGAGGTGGACGAAGAGTGGATACAGAGTATGGAAATAGACAACAAGCTCG
AGACACAACGCCTGGAGGATGAGCTCAAAGGCTACAAGAATAACCTCATCAAAGAGACCATTAGGGTAGGCTCCG
AATGACACAGTTGCCACCTAGCTGGGTCTGCACGCACTACTGACGCTTCTCCAGATGGGACACGAGGATCTCGGC
AAACATTATCAGAGCATTGGAGACCTATACAATGCTATGGAAGCATTCACGCGCATGCACAAGGATGTCAGCACC
ACAAAGCACATCGCTGACTGCTGTTTGCATATTTCAAGAGTTGCCTTGCAACAACGGGACTGGCAAATCGTTCTG
AACCACGCGAATAGGATGGCCGGACAGGGCAGCTCCGAGGAGTCTGCAACACAGGCCAAAAGCAATATTCTATGT
GGCGTCGCCTTGATGTGTCTGGGGAAGTACGCCGACGCGGCCCAAAATTTCCTTCAAGTCAGTGCTCAACCCTCC
GCCAGTGAATACTCGGACCTCATCAGCCCCAGCGATATTGCTATTTATGGCGGCCTTACCGCCCTAGCCACAATG
GATAGGCGCGAGCTGCAGCAGCGAGTCTTGGAAAACGTATCATTTCGCTCATTTCTCGAGCATGAGGTCCACATT
CGCAAAGCAATCAACTTCTTCATCAATGGCCGATATCCCAGCTGTCTGTCGACCCTCGAGTCTGTGCGGTCCGAT
CTTTTGCTTGATATATATCTGCAAGAGCACGTTCAACATCTCTTCCCCAAGATCCGAAGCAAGTGCATTGAGCAG
TACTTTATCCCCTATAGCAATGTCACGATACAAAGCCTTGAAGCTGCCTTTGGCAGACCCGACCACGACATTGAG
TCTGAGCTTGCAACCATGATTGGTCAGAAGTCACTCAAGGCGCGAATTGACACAAAGCAAAGGGTACGCTCATCC
TTCTCTTGTTGTCCATAATTATCCCGCTTCCGCGTTCTAACTCTTAACTTTGCCCAATGAAGCTACTGTTTGCAG
AATCCAAAGATGTGCGCGGACAAATGCAGGCGGAAGCTCTCGAGACAGCTCAGCAGTACGAAAAAGAAGCCAAGG
AAAGACTGCGACGCCTCAATCTCATAGCTGCTGGACTCGAAGTCACGGGCGACGCGATGGGTCAAGCCATCGAGT
CCACCGGCCTTGTGGCGGGACAGTCCTGGCCGCAGCACGACGATCTGTATATTCAACCACCCATTGCCAGCGCAG
CCTCTATGCACGCGGCGGTCAATTTCTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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