Fungal Genomics

at Utrecht University

General Properties

Protein IDOphauB2|7429
Gene name
LocationContig_8:104799..106371
Strand-
Gene length (bp)1572
Transcript length (bp)1572
Coding sequence length (bp)1572
Protein length (aa) 524

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.2E-05 63 124
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 7.9E-13 336 399

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|O74452|SCW1_SCHPO Cell wall integrity protein scw1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=scw1 PE=1 SV=1 324 416 5.0E-39
sp|P34761|WHI3_YEAST Protein WHI3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=WHI3 PE=1 SV=1 322 416 6.0E-37
sp|Q07655|WHI4_YEAST Protein WHI4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=WHI4 PE=1 SV=1 322 416 8.0E-35
sp|O59784|MDE7_SCHPO RNA-binding protein mde7 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mde7 PE=3 SV=1 328 419 2.0E-29
sp|Q8H0P8|RBP1_MEDTR RNA-binding protein 1 OS=Medicago truncatula GN=RBP1 PE=2 SV=1 305 418 1.0E-06
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Swissprot ID Swissprot Description Start End E-value
sp|O74452|SCW1_SCHPO Cell wall integrity protein scw1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=scw1 PE=1 SV=1 324 416 5.0E-39
sp|P34761|WHI3_YEAST Protein WHI3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=WHI3 PE=1 SV=1 322 416 6.0E-37
sp|Q07655|WHI4_YEAST Protein WHI4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=WHI4 PE=1 SV=1 322 416 8.0E-35
sp|O59784|MDE7_SCHPO RNA-binding protein mde7 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mde7 PE=3 SV=1 328 419 2.0E-29
sp|Q8H0P8|RBP1_MEDTR RNA-binding protein 1 OS=Medicago truncatula GN=RBP1 PE=2 SV=1 305 418 1.0E-06
sp|G7ID19|RBP2_MEDTR RNA-binding protein 2 OS=Medicago truncatula GN=RBP2 PE=2 SV=1 334 424 4.0E-06
sp|A1A6K6|NSRA_ARATH Nuclear speckle RNA-binding protein A OS=Arabidopsis thaliana GN=NSRA PE=2 SV=1 334 421 6.0E-06
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GO

GO Term Description Terminal node
GO:0003723 RNA binding Yes
GO:0003674 molecular_function No
GO:0005488 binding No
GO:1901363 heterocyclic compound binding No
GO:0097159 organic cyclic compound binding No
GO:0003676 nucleic acid binding No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 25 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >OphauB2|7429
MYQWAHHQPPALTTNSRWLSNGAASRLFSRDTNSSAPPPMPPHDPSSFSEASNMYQPESVVFLRIRNLPPSVSED
SVRLLLAWADGLTSIRMLSDDGDNNAFSSALLTFCSRKDANAAKEVLDQYSNSFSTHFIVDILDHAYHVGDNLAP
SPAVSQPTSFRNQPPLRFANGAFSSADNISPTSTTAAFSHQGRTASYHNIYSPQSPIGTQPSENTRMSGKSLISR
DLGDDETSDLLRDPVAYAENGPVSQRRATAPHIPTVRMGSLSLATSHAPSASSPPCPSSLPQYGFMSSNSPLGVS
SGHIAQGIMYGHHFQPRHNNFPPVNPADQNPPCNTLYVGNLPIDTSEEELKAIFSKQRGYKRLCFRTKQNGPMCF
VEFEDVAFATRALTEMYGHLLHNSVKGGIRLSFSKNPLGVRSGQPGAHGAAGPMGPMAPHPAAFTTVQGPPPGLA
APPGLGAARSNGFNWGSHMSNGGSSSRVNNMPTLPGSARHPQVMGNPMPMNGPNLQTSYGGCVNNVPRNMVGR*
Coding >OphauB2|7429
ATGTATCAGTGGGCTCACCATCAACCCCCCGCCCTCACCACCAACTCGCGATGGCTCTCCAACGGCGCCGCTTCT
CGTCTCTTTTCTCGCGACACAAACTCGTCGGCCCCGCCTCCTATGCCTCCCCACGACCCTTCTAGCTTCTCTGAA
GCCTCAAACATGTATCAGCCTGAATCTGTCGTCTTCCTCCGCATCCGCAACCTGCCCCCAAGTGTATCTGAAGAC
AGTGTACGCTTGCTGCTGGCTTGGGCCGATGGCCTCACCTCTATCCGCATGCTGTCCGACGACGGCGACAACAAT
GCCTTTTCCTCAGCTCTGCTCACCTTCTGCTCCCGCAAGGACGCCAACGCGGCCAAGGAAGTCCTCGACCAGTAT
AGCAATTCCTTCAGCACCCATTTCATTGTCGACATTCTAGACCACGCATACCATGTCGGTGACAACCTCGCGCCG
TCTCCCGCCGTCTCACAGCCCACTTCTTTTCGGAACCAGCCGCCCCTGCGCTTTGCCAATGGCGCTTTTTCATCT
GCCGACAACATCTCGCCAACATCGACCACGGCTGCCTTTTCTCATCAGGGTCGTACTGCCTCGTACCACAATATC
TACTCTCCACAGTCGCCCATAGGCACTCAGCCATCGGAAAACACGAGAATGTCTGGCAAGTCACTCATTAGCCGC
GACCTTGGCGATGACGAGACGAGCGATCTTCTCCGAGATCCTGTGGCATATGCTGAAAATGGTCCCGTTTCCCAG
CGGCGAGCTACTGCGCCGCACATCCCCACGGTACGAATGGGCAGTCTCTCCCTGGCCACTAGTCATGCACCGTCT
GCCAGCAGCCCGCCCTGCCCGTCATCTCTCCCCCAGTATGGTTTCATGTCATCTAATTCTCCACTCGGAGTCTCA
TCCGGCCACATTGCACAGGGCATCATGTACGGCCATCACTTTCAGCCGCGGCACAATAATTTCCCGCCCGTCAAC
CCGGCGGACCAGAACCCGCCCTGCAACACTCTCTATGTCGGCAATCTCCCCATTGATACGTCTGAGGAAGAACTC
AAGGCAATCTTTTCCAAACAACGAGGCTACAAGCGGCTCTGTTTCCGTACAAAGCAAAACGGGCCCATGTGCTTT
GTCGAGTTTGAAGATGTAGCCTTTGCCACCAGGGCTCTGACGGAGATGTACGGCCATCTCCTTCACAACAGCGTC
AAGGGCGGCATTCGTCTCAGCTTCTCCAAGAACCCGCTGGGCGTGCGCTCTGGTCAGCCCGGTGCTCATGGCGCT
GCTGGTCCAATGGGGCCCATGGCACCGCATCCTGCTGCATTCACCACTGTCCAAGGCCCGCCTCCCGGCCTTGCC
GCTCCCCCTGGTCTAGGCGCCGCTCGTTCCAATGGCTTCAACTGGGGCTCACATATGAGTAATGGCGGCAGCAGT
TCGCGTGTCAACAACATGCCCACTCTTCCTGGTTCTGCGCGGCATCCTCAAGTCATGGGAAACCCCATGCCCATG
AACGGCCCAAATCTGCAGACTTCCTACGGGGGCTGTGTCAATAATGTGCCACGCAACATGGTGGGCAGATGA
Transcript >OphauB2|7429
ATGTATCAGTGGGCTCACCATCAACCCCCCGCCCTCACCACCAACTCGCGATGGCTCTCCAACGGCGCCGCTTCT
CGTCTCTTTTCTCGCGACACAAACTCGTCGGCCCCGCCTCCTATGCCTCCCCACGACCCTTCTAGCTTCTCTGAA
GCCTCAAACATGTATCAGCCTGAATCTGTCGTCTTCCTCCGCATCCGCAACCTGCCCCCAAGTGTATCTGAAGAC
AGTGTACGCTTGCTGCTGGCTTGGGCCGATGGCCTCACCTCTATCCGCATGCTGTCCGACGACGGCGACAACAAT
GCCTTTTCCTCAGCTCTGCTCACCTTCTGCTCCCGCAAGGACGCCAACGCGGCCAAGGAAGTCCTCGACCAGTAT
AGCAATTCCTTCAGCACCCATTTCATTGTCGACATTCTAGACCACGCATACCATGTCGGTGACAACCTCGCGCCG
TCTCCCGCCGTCTCACAGCCCACTTCTTTTCGGAACCAGCCGCCCCTGCGCTTTGCCAATGGCGCTTTTTCATCT
GCCGACAACATCTCGCCAACATCGACCACGGCTGCCTTTTCTCATCAGGGTCGTACTGCCTCGTACCACAATATC
TACTCTCCACAGTCGCCCATAGGCACTCAGCCATCGGAAAACACGAGAATGTCTGGCAAGTCACTCATTAGCCGC
GACCTTGGCGATGACGAGACGAGCGATCTTCTCCGAGATCCTGTGGCATATGCTGAAAATGGTCCCGTTTCCCAG
CGGCGAGCTACTGCGCCGCACATCCCCACGGTACGAATGGGCAGTCTCTCCCTGGCCACTAGTCATGCACCGTCT
GCCAGCAGCCCGCCCTGCCCGTCATCTCTCCCCCAGTATGGTTTCATGTCATCTAATTCTCCACTCGGAGTCTCA
TCCGGCCACATTGCACAGGGCATCATGTACGGCCATCACTTTCAGCCGCGGCACAATAATTTCCCGCCCGTCAAC
CCGGCGGACCAGAACCCGCCCTGCAACACTCTCTATGTCGGCAATCTCCCCATTGATACGTCTGAGGAAGAACTC
AAGGCAATCTTTTCCAAACAACGAGGCTACAAGCGGCTCTGTTTCCGTACAAAGCAAAACGGGCCCATGTGCTTT
GTCGAGTTTGAAGATGTAGCCTTTGCCACCAGGGCTCTGACGGAGATGTACGGCCATCTCCTTCACAACAGCGTC
AAGGGCGGCATTCGTCTCAGCTTCTCCAAGAACCCGCTGGGCGTGCGCTCTGGTCAGCCCGGTGCTCATGGCGCT
GCTGGTCCAATGGGGCCCATGGCACCGCATCCTGCTGCATTCACCACTGTCCAAGGCCCGCCTCCCGGCCTTGCC
GCTCCCCCTGGTCTAGGCGCCGCTCGTTCCAATGGCTTCAACTGGGGCTCACATATGAGTAATGGCGGCAGCAGT
TCGCGTGTCAACAACATGCCCACTCTTCCTGGTTCTGCGCGGCATCCTCAAGTCATGGGAAACCCCATGCCCATG
AACGGCCCAAATCTGCAGACTTCCTACGGGGGCTGTGTCAATAATGTGCCACGCAACATGGTGGGCAGATGA
Gene >OphauB2|7429
ATGTATCAGTGGGCTCACCATCAACCCCCCGCCCTCACCACCAACTCGCGATGGCTCTCCAACGGCGCCGCTTCT
CGTCTCTTTTCTCGCGACACAAACTCGTCGGCCCCGCCTCCTATGCCTCCCCACGACCCTTCTAGCTTCTCTGAA
GCCTCAAACATGTATCAGCCTGAATCTGTCGTCTTCCTCCGCATCCGCAACCTGCCCCCAAGTGTATCTGAAGAC
AGTGTACGCTTGCTGCTGGCTTGGGCCGATGGCCTCACCTCTATCCGCATGCTGTCCGACGACGGCGACAACAAT
GCCTTTTCCTCAGCTCTGCTCACCTTCTGCTCCCGCAAGGACGCCAACGCGGCCAAGGAAGTCCTCGACCAGTAT
AGCAATTCCTTCAGCACCCATTTCATTGTCGACATTCTAGACCACGCATACCATGTCGGTGACAACCTCGCGCCG
TCTCCCGCCGTCTCACAGCCCACTTCTTTTCGGAACCAGCCGCCCCTGCGCTTTGCCAATGGCGCTTTTTCATCT
GCCGACAACATCTCGCCAACATCGACCACGGCTGCCTTTTCTCATCAGGGTCGTACTGCCTCGTACCACAATATC
TACTCTCCACAGTCGCCCATAGGCACTCAGCCATCGGAAAACACGAGAATGTCTGGCAAGTCACTCATTAGCCGC
GACCTTGGCGATGACGAGACGAGCGATCTTCTCCGAGATCCTGTGGCATATGCTGAAAATGGTCCCGTTTCCCAG
CGGCGAGCTACTGCGCCGCACATCCCCACGGTACGAATGGGCAGTCTCTCCCTGGCCACTAGTCATGCACCGTCT
GCCAGCAGCCCGCCCTGCCCGTCATCTCTCCCCCAGTATGGTTTCATGTCATCTAATTCTCCACTCGGAGTCTCA
TCCGGCCACATTGCACAGGGCATCATGTACGGCCATCACTTTCAGCCGCGGCACAATAATTTCCCGCCCGTCAAC
CCGGCGGACCAGAACCCGCCCTGCAACACTCTCTATGTCGGCAATCTCCCCATTGATACGTCTGAGGAAGAACTC
AAGGCAATCTTTTCCAAACAACGAGGCTACAAGCGGCTCTGTTTCCGTACAAAGCAAAACGGGCCCATGTGCTTT
GTCGAGTTTGAAGATGTAGCCTTTGCCACCAGGGCTCTGACGGAGATGTACGGCCATCTCCTTCACAACAGCGTC
AAGGGCGGCATTCGTCTCAGCTTCTCCAAGAACCCGCTGGGCGTGCGCTCTGGTCAGCCCGGTGCTCATGGCGCT
GCTGGTCCAATGGGGCCCATGGCACCGCATCCTGCTGCATTCACCACTGTCCAAGGCCCGCCTCCCGGCCTTGCC
GCTCCCCCTGGTCTAGGCGCCGCTCGTTCCAATGGCTTCAACTGGGGCTCACATATGAGTAATGGCGGCAGCAGT
TCGCGTGTCAACAACATGCCCACTCTTCCTGGTTCTGCGCGGCATCCTCAAGTCATGGGAAACCCCATGCCCATG
AACGGCCCAAATCTGCAGACTTCCTACGGGGGCTGTGTCAATAATGTGCCACGCAACATGGTGGGCAGATGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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