Fungal Genomics

at Utrecht University

General Properties

Protein ID	OphauB2\|7327
Gene name
Location	Contig_77:87564..88897
Strand	-
Gene length (bp)	1333
Transcript length (bp)	1179
Coding sequence length (bp)	1179
Protein length (aa)	393

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF00566	RabGAP-TBC	Rab-GTPase-TBC domain	7.9E-18	52	256

Swissprot hits

Swissprot ID	Swissprot Description	Start	End	E-value
sp\|Q9D9I4\|TBC20_MOUSE	TBC1 domain family member 20 OS=Mus musculus GN=Tbc1d20 PE=1 SV=1	3	300	6.0E-43
sp\|Q2T9Q1\|TBC20_BOVIN	TBC1 domain family member 20 OS=Bos taurus GN=TBC1D20 PE=2 SV=1	3	300	2.0E-42
sp\|Q96BZ9\|TBC20_HUMAN	TBC1 domain family member 20 OS=Homo sapiens GN=TBC1D20 PE=1 SV=1	21	300	2.0E-41
sp\|O94661\|GYP10_SCHPO	GTPase-activating protein gyp10 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gyp10 PE=3 SV=1	21	340	3.0E-39
sp\|P43570\|GYP8_YEAST	GTPase-activating protein GYP8 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GYP8 PE=1 SV=1	2	224	2.0E-16

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 39	0.45

Transmembrane Domains

Domain #	Start	End	Length
1	359	376	17

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>OphauB2\|7327 MDSSNRGPDDASHLDAALWTRQKRIEILSACQSRDVAALSSLAQSRYGLLSDSLRKAAWPILLGLPLPPPLGADA PPAADDDWKDLPCHRDEDQVQLDVNRSFVYYPAHQSETELERCKLDLSCLIIEVLRRNPYLCYFQGYHDICQVFL LVLGPVRRAEAVARLSVLRIRDFMLPSLAPTTAQLRLLPDILTKADPELRRHIASVEPFYALAGTLTMYAHNIER YRDIVRLFDVLLAREPVFTIYLFACIVMDRRDEVFDIDEPDMLQVVLAKVPADMDIDGLVVKAVALYDRFPPQSL PAWRQISKASVLKTARDVCDCATQTLQQGRAYFQRQVSELWWLNTRQNILLVFGRYRRPVRAIGMAFAVAAVAFY LRQNPAAMRYLTSLFSK*
Coding	>OphauB2\|7327 ATGGACTCTAGCAATCGAGGTCCCGACGACGCATCCCACCTCGATGCTGCCCTGTGGACTAGGCAGAAGCGAATC GAGATTCTCAGCGCTTGCCAATCACGGGATGTCGCTGCTCTAAGCTCTCTCGCTCAATCACGCTACGGCCTGCTC TCCGACTCGTTACGAAAAGCAGCCTGGCCAATCTTACTAGGCCTCCCATTACCCCCGCCGCTCGGTGCCGATGCG CCTCCGGCTGCCGACGACGACTGGAAAGACCTACCTTGCCACAGGGACGAAGACCAGGTTCAACTCGATGTCAAC CGCTCCTTTGTGTATTATCCAGCCCACCAGTCCGAAACTGAGCTCGAGCGTTGTAAACTAGACCTATCATGCCTC ATCATTGAGGTTTTGCGTCGAAATCCCTATCTCTGCTACTTTCAGGGCTATCATGACATCTGCCAAGTCTTTTTG CTCGTTTTGGGGCCAGTCAGACGGGCCGAAGCCGTTGCGCGCCTCTCGGTCCTGCGCATCCGCGACTTCATGCTG CCTAGTCTTGCTCCCACCACTGCTCAGCTAAGACTGCTGCCAGATATCCTGACCAAGGCGGACCCTGAGCTGCGG CGGCACATAGCTTCTGTGGAGCCCTTCTACGCCTTGGCAGGAACACTGACAATGTACGCCCACAACATCGAGCGT TATCGAGACATTGTACGCTTATTCGATGTTTTGCTTGCCCGCGAGCCCGTCTTCACCATCTATCTCTTTGCTTGC ATCGTCATGGACCGTCGTGACGAGGTCTTTGACATCGATGAGCCCGACATGCTCCAGGTGGTCCTGGCCAAAGTC CCCGCCGACATGGACATAGACGGGCTCGTTGTCAAGGCTGTAGCCCTCTATGATCGCTTTCCCCCTCAATCGCTG CCAGCGTGGCGTCAAATTTCAAAGGCAAGCGTTCTCAAGACGGCTAGAGACGTTTGCGACTGCGCTACTCAAACG CTCCAACAAGGCCGCGCCTACTTTCAGCGCCAAGTCAGCGAGCTTTGGTGGCTCAATACGCGCCAAAACATCCTC CTGGTATTCGGCAGATATCGAAGACCAGTCAGAGCCATTGGTATGGCCTTCGCCGTTGCCGCCGTTGCCTTCTAT CTGCGACAGAATCCGGCTGCCATGCGGTACTTGACAAGCCTCTTTTCAAAATGA
Transcript	>OphauB2\|7327 ATGGACTCTAGCAATCGAGGTCCCGACGACGCATCCCACCTCGATGCTGCCCTGTGGACTAGGCAGAAGCGAATC GAGATTCTCAGCGCTTGCCAATCACGGGATGTCGCTGCTCTAAGCTCTCTCGCTCAATCACGCTACGGCCTGCTC TCCGACTCGTTACGAAAAGCAGCCTGGCCAATCTTACTAGGCCTCCCATTACCCCCGCCGCTCGGTGCCGATGCG CCTCCGGCTGCCGACGACGACTGGAAAGACCTACCTTGCCACAGGGACGAAGACCAGGTTCAACTCGATGTCAAC CGCTCCTTTGTGTATTATCCAGCCCACCAGTCCGAAACTGAGCTCGAGCGTTGTAAACTAGACCTATCATGCCTC ATCATTGAGGTTTTGCGTCGAAATCCCTATCTCTGCTACTTTCAGGGCTATCATGACATCTGCCAAGTCTTTTTG CTCGTTTTGGGGCCAGTCAGACGGGCCGAAGCCGTTGCGCGCCTCTCGGTCCTGCGCATCCGCGACTTCATGCTG CCTAGTCTTGCTCCCACCACTGCTCAGCTAAGACTGCTGCCAGATATCCTGACCAAGGCGGACCCTGAGCTGCGG CGGCACATAGCTTCTGTGGAGCCCTTCTACGCCTTGGCAGGAACACTGACAATGTACGCCCACAACATCGAGCGT TATCGAGACATTGTACGCTTATTCGATGTTTTGCTTGCCCGCGAGCCCGTCTTCACCATCTATCTCTTTGCTTGC ATCGTCATGGACCGTCGTGACGAGGTCTTTGACATCGATGAGCCCGACATGCTCCAGGTGGTCCTGGCCAAAGTC CCCGCCGACATGGACATAGACGGGCTCGTTGTCAAGGCTGTAGCCCTCTATGATCGCTTTCCCCCTCAATCGCTG CCAGCGTGGCGTCAAATTTCAAAGGCAAGCGTTCTCAAGACGGCTAGAGACGTTTGCGACTGCGCTACTCAAACG CTCCAACAAGGCCGCGCCTACTTTCAGCGCCAAGTCAGCGAGCTTTGGTGGCTCAATACGCGCCAAAACATCCTC CTGGTATTCGGCAGATATCGAAGACCAGTCAGAGCCATTGGTATGGCCTTCGCCGTTGCCGCCGTTGCCTTCTAT CTGCGACAGAATCCGGCTGCCATGCGGTACTTGACAAGCCTCTTTTCAAAATGA
Gene	>OphauB2\|7327 ATGGACTCTAGCAATCGAGGTCCCGACGACGCATCCCACCTCGATGCTGCCCTGTGGACTAGGCAGAAGCGAATC GAGATTCTCAGCGCTTGCCAATCACGGGATGTCGCTGCTCTAAGCTCTCTCGCTCAATCACGCTACGGCCTGCTC TCCGACTCGTTACGAAAAGCAGCCTGTGCGCTCCTTCAGTGCCACCCCTCCTCACACCTTGTCGAGCTTGCACTG ACCTTGGCCTGCCTCATTACGAAACAGGGCCAATCTTACTAGGCCTCCCATTACCCCCGCCGCTCGGTGCCGATG CGCCTCCGGCTGCCGACGACGACTGGAAAGACCTACCTTGCCACAGGGACGAAGACCAGGTTCAACTCGATGTCA ACCGCTCCTTTGTGTATTATCCAGCCCGTACGCGTGTATCCAAATTCTCTAGACTCCTATTATCGCTGACTTGCC CTCGCCGCCGTCATCTTCAACATACCCAGACCAGTCCGAAACTGAGCTCGAGCGTTGTAAACTAGACCTATCATG CCTCATCATTGAGGTTTTGCGTCGAAATCCCTATCTCTGCTACTTTCAGGGCTATCATGACATCTGCCAAGTCTT TTTGCTCGTTTTGGGGCCAGTCAGACGGGCCGAAGCCGTTGCGCGCCTCTCGGTCCTGCGCATCCGCGACTTCAT GCTGCCTAGTCTTGCTCCCACCACTGCTCAGCTAAGACTGCTGCCAGATATCCTGACCAAGGCGGACCCTGAGCT GCGGCGGCACATAGCTTCTGTGGAGCCCTTCTACGCCTTGGCAGGAACACTGACAATGTACGCCCACAACATCGA GCGTTATCGAGACATTGTACGCTTATTCGATGTTTTGCTTGCCCGCGAGCCCGTCTTCACCATCTATCTCTTTGC TTGCATCGTCATGGACCGTCGTGACGAGGTCTTTGACATCGATGAGCCCGACATGCTCCAGGTGGTCCTGGCCAA AGTCCCCGCCGACATGGACATAGACGGGCTCGTTGTCAAGGCTGTAGCCCTCTATGATCGCTTTCCCCCTCAATC GCTGCCAGCGTGGCGTCAAATTTCAAAGGCAAGCGTTCTCAAGACGGCTAGAGACGTTTGCGACTGCGCTACTCA AACGCTCCAACAAGGCCGCGCCTACTTTCAGCGCCAAGTCAGCGAGCTTTGGTGGCTCAATACGCGCCAAAACAT CCTCCTGGTATTCGGCAGATATCGAAGACCAGTCAGAGCCATTGGTATGGCCTTCGCCGTTGCCGCCGTTGCCTT CTATCTGCGACAGAATCCGGCTGCCATGCGGTACTTGACAAGCCTCTTTTCAAAATGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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