© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauB2|732 |
| Gene name | |
| Location | Contig_114:49038..50760 |
| Strand | - |
| Gene length (bp) | 1722 |
| Transcript length (bp) | 1650 |
| Coding sequence length (bp) | 1650 |
| Protein length (aa) | 550 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF12230 | PRP21_like_P | Pre-mRNA splicing factor PRP21 like protein | 2.4E-49 | 203 | 481 |
| PF01805 | Surp | Surp module | 6.1E-15 | 33 | 83 |
| PF01805 | Surp | Surp module | 8.3E-14 | 130 | 180 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O13900|SA114_SCHPO | Pre-mRNA-splicing factor sap114 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sap114 PE=1 SV=1 | 21 | 512 | 2.0E-75 |
| sp|Q15459|SF3A1_HUMAN | Splicing factor 3A subunit 1 OS=Homo sapiens GN=SF3A1 PE=1 SV=1 | 24 | 276 | 2.0E-48 |
| sp|A2VDN6|SF3A1_BOVIN | Splicing factor 3A subunit 1 OS=Bos taurus GN=SF3A1 PE=2 SV=1 | 24 | 276 | 2.0E-48 |
| sp|Q8K4Z5|SF3A1_MOUSE | Splicing factor 3A subunit 1 OS=Mus musculus GN=Sf3a1 PE=1 SV=1 | 24 | 276 | 3.0E-48 |
| sp|Q8RXF1|SF3A1_ARATH | Probable splicing factor 3A subunit 1 OS=Arabidopsis thaliana GN=At1g14650 PE=1 SV=2 | 24 | 276 | 2.0E-38 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O13900|SA114_SCHPO | Pre-mRNA-splicing factor sap114 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sap114 PE=1 SV=1 | 21 | 512 | 2.0E-75 |
| sp|Q15459|SF3A1_HUMAN | Splicing factor 3A subunit 1 OS=Homo sapiens GN=SF3A1 PE=1 SV=1 | 24 | 276 | 2.0E-48 |
| sp|A2VDN6|SF3A1_BOVIN | Splicing factor 3A subunit 1 OS=Bos taurus GN=SF3A1 PE=2 SV=1 | 24 | 276 | 2.0E-48 |
| sp|Q8K4Z5|SF3A1_MOUSE | Splicing factor 3A subunit 1 OS=Mus musculus GN=Sf3a1 PE=1 SV=1 | 24 | 276 | 3.0E-48 |
| sp|Q8RXF1|SF3A1_ARATH | Probable splicing factor 3A subunit 1 OS=Arabidopsis thaliana GN=At1g14650 PE=1 SV=2 | 24 | 276 | 2.0E-38 |
| sp|Q86A14|SF3A1_DICDI | Probable splicing factor 3A subunit 1 OS=Dictyostelium discoideum GN=sf3a1 PE=3 SV=1 | 128 | 276 | 2.0E-18 |
| sp|A2VDN6|SF3A1_BOVIN | Splicing factor 3A subunit 1 OS=Bos taurus GN=SF3A1 PE=2 SV=1 | 400 | 539 | 5.0E-09 |
| sp|Q15459|SF3A1_HUMAN | Splicing factor 3A subunit 1 OS=Homo sapiens GN=SF3A1 PE=1 SV=1 | 400 | 539 | 6.0E-09 |
| sp|Q8K4Z5|SF3A1_MOUSE | Splicing factor 3A subunit 1 OS=Mus musculus GN=Sf3a1 PE=1 SV=1 | 400 | 539 | 6.0E-09 |
| sp|P32524|PRP21_YEAST | Pre-mRNA-splicing factor PRP21 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PRP21 PE=1 SV=1 | 27 | 253 | 2.0E-07 |
| sp|Q86A14|SF3A1_DICDI | Probable splicing factor 3A subunit 1 OS=Dictyostelium discoideum GN=sf3a1 PE=3 SV=1 | 400 | 486 | 5.0E-07 |
| sp|Q8RXF1|SF3A1_ARATH | Probable splicing factor 3A subunit 1 OS=Arabidopsis thaliana GN=At1g14650 PE=1 SV=2 | 398 | 507 | 6.0E-07 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006396 | RNA processing | Yes |
| GO:0003723 | RNA binding | Yes |
| GO:0090304 | nucleic acid metabolic process | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0006725 | cellular aromatic compound metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0005488 | binding | No |
| GO:0003674 | molecular_function | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0006139 | nucleobase-containing compound metabolic process | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0009987 | cellular process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0003676 | nucleic acid binding | No |
| GO:0046483 | heterocycle metabolic process | No |
| GO:0016070 | RNA metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 54 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauB2|732 MEAGPEVPSAEATAELDGLKVPPNIILPPRDMRNILERTAGYVSRNGQVFQERIQENNKHNLLFNFLSPEDAYFP YYEWRLAEITAGRGTSVSAGRTVRVVQDVKPKGPPPPPEFQFSAKMPRINQKDLDVLKITAQFTAKHGRQWMTHL AQREAGNPQFQFLIPNHTFHNFFQHIVEQYSKMIKFHENPQMHQEMMEKAKANIDNPYRVLERARQRAEYGVFQE REKHSKEEEEAKKRAEIARIDWGDFVIVETITFTDSDETANLPPPTNLSELQYASLEDRKKISISANLRIEETRP DEDLSMLDGGYATYPAATAASQSPFAVPARPGSAPQSAAPQPFYQPGAMPPAQYPAAGYSHQPQRPSQEEEEARR IQERSDAQSRMQQSQVDARGGAAPIKIRENYVPRAAQRAANKPGAQMGLCPNCKQQIPLNELEAHMRIELLDPSW KEQKAKADARYAHSNMSTADVANNLKRLASQRSDVFDAVSGQPISEDELARRKKAAMNSFDGNPDGKNQAHLNHM QSFNVEEQIKAIQQKFSDKKEPGT* |
| Coding | >OphauB2|732 ATGGAGGCCGGACCTGAAGTGCCCAGCGCCGAGGCCACGGCCGAGCTGGACGGTCTCAAAGTCCCCCCCAACATC ATTCTTCCACCTCGCGATATGCGCAACATCTTGGAAAGGACAGCAGGTTATGTGTCGCGCAATGGGCAGGTATTT CAAGAGCGCATTCAGGAAAATAACAAGCACAATCTCTTGTTCAATTTTCTCTCGCCAGAGGATGCCTACTTTCCT TATTACGAGTGGCGCCTTGCTGAGATCACGGCTGGACGAGGCACTTCAGTCTCGGCTGGCCGCACTGTCAGGGTT GTCCAGGACGTCAAGCCTAAGGGGCCACCTCCTCCCCCCGAGTTTCAGTTCTCAGCCAAGATGCCGCGAATCAAT CAAAAAGACCTTGATGTTCTCAAGATAACTGCTCAATTCACGGCCAAGCATGGCCGCCAGTGGATGACTCACTTG GCACAGCGCGAGGCGGGAAATCCGCAGTTCCAATTCCTTATACCGAATCACACGTTTCACAACTTTTTCCAGCAC ATAGTCGAACAGTACAGCAAGATGATTAAGTTCCACGAAAACCCTCAGATGCATCAAGAAATGATGGAAAAGGCC AAGGCAAACATCGACAACCCATACCGGGTTCTTGAGCGAGCGAGGCAACGTGCCGAATACGGGGTGTTTCAAGAG CGAGAAAAACACAGCAAGGAGGAAGAGGAGGCCAAGAAGCGGGCCGAAATTGCTCGAATAGACTGGGGTGATTTT GTAATTGTTGAGACTATTACATTTACCGACTCGGACGAGACTGCGAATCTGCCGCCACCAACAAACCTTTCAGAG CTGCAATATGCAAGTCTTGAAGACCGCAAAAAGATATCCATTAGTGCGAATTTGCGGATTGAGGAAACTCGACCG GATGAAGACTTGTCTATGCTTGATGGCGGATACGCCACGTACCCTGCCGCAACAGCTGCCAGTCAATCTCCCTTT GCCGTACCCGCTCGTCCCGGCTCAGCACCGCAGTCAGCCGCTCCTCAGCCTTTCTATCAGCCGGGTGCGATGCCC CCTGCTCAGTACCCTGCCGCTGGTTATTCCCACCAGCCTCAGCGGCCCTCGCAAGAGGAAGAAGAGGCACGACGT ATACAGGAAAGATCTGATGCCCAATCTCGTATGCAACAGTCGCAAGTCGACGCCAGGGGGGGTGCAGCGCCCATC AAGATTCGAGAAAACTATGTGCCTCGGGCGGCTCAGCGGGCTGCCAACAAGCCAGGAGCACAAATGGGGCTGTGT CCCAACTGCAAACAGCAGATACCTCTAAACGAGTTGGAAGCACACATGCGCATCGAGCTCCTCGATCCAAGCTGG AAGGAGCAAAAAGCCAAGGCGGATGCACGCTATGCACACTCAAACATGTCGACGGCCGACGTGGCCAATAATTTG AAACGGCTGGCAAGTCAGCGCAGCGATGTGTTCGACGCCGTGAGTGGGCAGCCAATATCGGAAGACGAGCTTGCA CGACGTAAAAAGGCAGCCATGAATAGCTTTGACGGCAATCCCGACGGCAAAAACCAAGCTCACTTGAACCACATG CAAAGTTTCAACGTGGAGGAGCAAATCAAGGCCATTCAACAAAAGTTTTCTGATAAGAAGGAGCCTGGCACATAG |
| Transcript | >OphauB2|732 ATGGAGGCCGGACCTGAAGTGCCCAGCGCCGAGGCCACGGCCGAGCTGGACGGTCTCAAAGTCCCCCCCAACATC ATTCTTCCACCTCGCGATATGCGCAACATCTTGGAAAGGACAGCAGGTTATGTGTCGCGCAATGGGCAGGTATTT CAAGAGCGCATTCAGGAAAATAACAAGCACAATCTCTTGTTCAATTTTCTCTCGCCAGAGGATGCCTACTTTCCT TATTACGAGTGGCGCCTTGCTGAGATCACGGCTGGACGAGGCACTTCAGTCTCGGCTGGCCGCACTGTCAGGGTT GTCCAGGACGTCAAGCCTAAGGGGCCACCTCCTCCCCCCGAGTTTCAGTTCTCAGCCAAGATGCCGCGAATCAAT CAAAAAGACCTTGATGTTCTCAAGATAACTGCTCAATTCACGGCCAAGCATGGCCGCCAGTGGATGACTCACTTG GCACAGCGCGAGGCGGGAAATCCGCAGTTCCAATTCCTTATACCGAATCACACGTTTCACAACTTTTTCCAGCAC ATAGTCGAACAGTACAGCAAGATGATTAAGTTCCACGAAAACCCTCAGATGCATCAAGAAATGATGGAAAAGGCC AAGGCAAACATCGACAACCCATACCGGGTTCTTGAGCGAGCGAGGCAACGTGCCGAATACGGGGTGTTTCAAGAG CGAGAAAAACACAGCAAGGAGGAAGAGGAGGCCAAGAAGCGGGCCGAAATTGCTCGAATAGACTGGGGTGATTTT GTAATTGTTGAGACTATTACATTTACCGACTCGGACGAGACTGCGAATCTGCCGCCACCAACAAACCTTTCAGAG CTGCAATATGCAAGTCTTGAAGACCGCAAAAAGATATCCATTAGTGCGAATTTGCGGATTGAGGAAACTCGACCG GATGAAGACTTGTCTATGCTTGATGGCGGATACGCCACGTACCCTGCCGCAACAGCTGCCAGTCAATCTCCCTTT GCCGTACCCGCTCGTCCCGGCTCAGCACCGCAGTCAGCCGCTCCTCAGCCTTTCTATCAGCCGGGTGCGATGCCC CCTGCTCAGTACCCTGCCGCTGGTTATTCCCACCAGCCTCAGCGGCCCTCGCAAGAGGAAGAAGAGGCACGACGT ATACAGGAAAGATCTGATGCCCAATCTCGTATGCAACAGTCGCAAGTCGACGCCAGGGGGGGTGCAGCGCCCATC AAGATTCGAGAAAACTATGTGCCTCGGGCGGCTCAGCGGGCTGCCAACAAGCCAGGAGCACAAATGGGGCTGTGT CCCAACTGCAAACAGCAGATACCTCTAAACGAGTTGGAAGCACACATGCGCATCGAGCTCCTCGATCCAAGCTGG AAGGAGCAAAAAGCCAAGGCGGATGCACGCTATGCACACTCAAACATGTCGACGGCCGACGTGGCCAATAATTTG AAACGGCTGGCAAGTCAGCGCAGCGATGTGTTCGACGCCGTGAGTGGGCAGCCAATATCGGAAGACGAGCTTGCA CGACGTAAAAAGGCAGCCATGAATAGCTTTGACGGCAATCCCGACGGCAAAAACCAAGCTCACTTGAACCACATG CAAAGTTTCAACGTGGAGGAGCAAATCAAGGCCATTCAACAAAAGTTTTCTGATAAGAAGGAGCCTGGCACATAG |
| Gene | >OphauB2|732 ATGGAGGCCGGACCTGAAGTGCCCAGCGCCGAGGCCACGGCCGAGCTGGACGGTCTCAAAGTCCCCCCCAACATC ATTCTTCCACCTCGCGATATGCGCAACATCTTGGAAAGGACAGCAGGTTATGTGTCGCGCAATGGGCAGGTATTT CAAGAGCGCATTCAGGAAAATAACAAGCACAATCTCTTGTTCAATTTTCTCTCGCCAGAGGATGCCTACTTTCCT TATTACGAGTGGCGCCTTGCTGAGATCACGGCTGGACGAGGCACTTCAGTCTCGGCTGGCCGCACTGTCAGGGTT GTCCAGGACGTCAAGCCTAAGGGGCCACCTCCTCCCCCCGAGTTTCAGTTCTCAGCCAAGATGCCGCGAATCAAT CAAAAAGACCTTGATGTTCTCAAGATAACTGCTCAATTCACGGCCAAGCATGGCCGCCAGTGGATGACTCACTTG GCACAGCGCGAGGCGGGAAATCCGCAGTTCCAATTCCTTATACCGAATCACACGTTTCACAACTTTTTCCAGCAC ATAGTCGAACAGTACAGCAAGATGATTAAGTTCCACGAAAACCCTCAGATGCATCAAGAAATGATGGAAAAGGCC AAGGCAAACATCGACAACCCATACCGGGTTCTTGAGCGAGCGAGGCAACGTGCCGAATACGGGGTGTTTCAAGAG CGAGAAAAACACAGCAAGGAGGAAGAGGAGGCCAAGAAGCGGGCCGAAATTGCTCGAATAGACTGGGGTGATTTT GTAATTGTTGAGACTATTACATTTACCGACTCGGACGAGACTGCGAATCTGCCGCCACCAACAAACCTTTCAGAG CTGCAATATGCAAGTCTTGAAGACCGCAAAAAGATATCCATTAGTGCGAATTTGCGGATTGAGGAAACTCGACCG GATGAAGACTTGTCTATGCTTGATGGCGGATACGCCACGTACCCTGCCGCAACAGCTGCCAGTCAATCTCCCTTT GCCGTACCCGCTCGTCCCGGCTCAGCACCGCAGTCAGCCGCTCCTCAGCCTTTCTATCAGCCGGGTGCGATGCCC CCTGCTCAGTACCCTGCCGCTGGTTATTCCCACCAGCCTCAGCGGCCCTCGCAAGAGGAAGAAGAGGCACGACGT ATACAGGAAAGATCTGATGCCCAATCTCGTATGCAACAGTCGCAAGTCGACGCCAGGGGGGGTGCAGCGCCCATC AAGATTCGAGAAAACTATGTGCCTCGGGCGGCTCAGCGGGCTGCCAACAAGCCAGGAGCACAAATGGGGCTGTGT CCCAACTGCAAACAGCAGATACCTCTAAACGAGTTGGAAGCACACATGCGCAGTAAGTCTTGTATCACGCTTGAT GTAATGGGAATACACCATGAGTGCGCTAACTGGTAATTGTCTTATCTAGTCGAGCTCCTCGATCCAAGCTGGAAG GAGCAAAAAGCCAAGGCGGATGCACGCTATGCACACTCAAACATGTCGACGGCCGACGTGGCCAATAATTTGAAA CGGCTGGCAAGTCAGCGCAGCGATGTGTTCGACGCCGTGAGTGGGCAGCCAATATCGGAAGACGAGCTTGCACGA CGTAAAAAGGCAGCCATGAATAGCTTTGACGGCAATCCCGACGGCAAAAACCAAGCTCACTTGAACCACATGCAA AGTTTCAACGTGGAGGAGCAAATCAAGGCCATTCAACAAAAGTTTTCTGATAAGAAGGAGCCTGGCACATAG |