Fungal Genomics

at Utrecht University

General Properties

Protein IDOphauB2|7263
Gene name
LocationContig_76:4009..5511
Strand+
Gene length (bp)1502
Transcript length (bp)1386
Coding sequence length (bp)1386
Protein length (aa) 462

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF07967 zf-C3HC C3HC zinc finger-like 6.4E-34 89 227
PF08600 Rsm1 Rsm1-like 1.1E-23 276 367

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|O94506|RSM1_SCHPO mRNA export factor rsm1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rsm1 PE=4 SV=1 87 380 5.0E-14
sp|Q6P7H4|NIPA_XENLA NIPA-like protein OS=Xenopus laevis GN=zc3hc1 PE=2 SV=1 77 328 4.0E-06
sp|Q5M8S7|NIPA_XENTR NIPA-like protein OS=Xenopus tropicalis GN=zc3hc1 PE=2 SV=1 85 327 5.0E-06

GO

GO Term Description Terminal node
GO:0008270 zinc ion binding Yes
GO:0046872 metal ion binding No
GO:0003674 molecular_function No
GO:0005488 binding No
GO:0043167 ion binding No
GO:0046914 transition metal ion binding No
GO:0043169 cation binding No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 23 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >OphauB2|7263
MHATKRKFNALLQELTSSRAEANSCTAMDPDSSPISHQDLLAKRRRLGFPEATAPVQPVLSLSALSNSPSRRPST
AGSGTAETLSKYCPGDRQQLLKRLATFQELTDWTPKPDGVGEVEWAKRGWICRGKETVRCLLCHKEVVVKLEHKE
VEGQDISALASAEVENALVDKYAELIVSSHQQDCLWRRRGCDDTLLRISFSNAKATFTALRERYDELCTRHTFLP
YEFNLRLPKELDIDQVLSQLPPGFFTRTDKPAKSATTIATSAVSQPVNRAALALALTGWQGLTNRRMGAVANSAS
CHTCLRRLGLWMFRSKEVDANGHIVTPAPMDHLDALAEHRFFCPWRSPKAQSKGGAAQAAGLAAWQALLQSVRNE
ASLRSVYAGRAQQLPATARQTTPSIGSVADEGEPSLGVEADDGARDAKDKERWARLRKVKSMLNTKKLRRSTGKP
ESIKSNHSSGG*
Coding >OphauB2|7263
ATGCACGCCACCAAGCGCAAGTTCAACGCGCTGCTCCAAGAACTCACCTCGTCGCGCGCAGAGGCAAACTCTTGC
ACCGCCATGGACCCCGACTCCTCACCCATTAGCCACCAAGACCTACTCGCAAAGCGACGCCGGCTGGGATTCCCC
GAGGCCACGGCCCCCGTGCAGCCCGTCTTGTCGCTCTCGGCCCTCTCCAACAGCCCATCTCGCCGCCCCAGCACT
GCTGGGTCCGGCACGGCAGAGACGCTGTCCAAGTACTGTCCCGGAGACAGGCAGCAGCTGCTGAAGCGGCTGGCC
ACGTTTCAGGAGCTTACGGACTGGACGCCCAAGCCTGATGGGGTGGGAGAGGTGGAGTGGGCTAAGCGGGGCTGG
ATATGCCGTGGCAAGGAAACGGTGCGCTGTCTTCTTTGCCACAAGGAAGTGGTGGTGAAGTTGGAGCACAAGGAG
GTTGAGGGCCAGGATATATCGGCTCTTGCGTCGGCAGAAGTTGAAAATGCCTTGGTGGACAAGTATGCAGAGCTC
ATTGTTAGCTCACATCAACAAGACTGTCTTTGGCGCCGGCGCGGCTGCGATGATACTCTGCTTCGAATATCCTTT
TCCAACGCAAAGGCAACCTTTACCGCTCTCAGAGAGCGCTACGATGAATTGTGTACGCGCCACACCTTTCTCCCC
TATGAATTCAACTTGCGTCTCCCCAAGGAACTCGACATTGACCAGGTTCTCTCCCAACTACCGCCCGGCTTCTTC
ACCCGCACCGACAAACCTGCCAAGTCTGCCACCACCATTGCCACTTCAGCTGTCAGCCAGCCCGTCAACCGGGCG
GCCCTGGCCCTGGCTCTCACGGGCTGGCAGGGCCTCACGAACCGCCGCATGGGCGCCGTGGCCAATTCGGCCTCG
TGCCACACTTGTCTGCGCCGCCTGGGCCTCTGGATGTTTCGCAGCAAAGAGGTGGACGCAAACGGCCACATTGTG
ACGCCCGCCCCCATGGACCATCTCGACGCCCTGGCCGAACACCGCTTCTTTTGCCCGTGGAGAAGCCCCAAGGCG
CAGAGCAAGGGCGGCGCCGCACAAGCCGCCGGCCTGGCGGCATGGCAGGCCCTGCTGCAGAGCGTGCGCAACGAA
GCCAGCCTGCGCAGCGTCTACGCCGGCCGAGCCCAGCAGCTGCCAGCGACGGCGCGCCAGACAACGCCGAGTATT
GGCTCCGTGGCAGACGAGGGCGAGCCTAGCCTTGGCGTCGAGGCGGATGATGGGGCTCGGGATGCAAAGGACAAG
GAACGCTGGGCGCGGCTGCGCAAGGTGAAGAGTATGCTGAATACAAAGAAGCTGAGGAGGTCGACGGGGAAGCCA
GAGTCTATAAAGTCGAATCACTCGAGCGGGGGGTAG
Transcript >OphauB2|7263
ATGCACGCCACCAAGCGCAAGTTCAACGCGCTGCTCCAAGAACTCACCTCGTCGCGCGCAGAGGCAAACTCTTGC
ACCGCCATGGACCCCGACTCCTCACCCATTAGCCACCAAGACCTACTCGCAAAGCGACGCCGGCTGGGATTCCCC
GAGGCCACGGCCCCCGTGCAGCCCGTCTTGTCGCTCTCGGCCCTCTCCAACAGCCCATCTCGCCGCCCCAGCACT
GCTGGGTCCGGCACGGCAGAGACGCTGTCCAAGTACTGTCCCGGAGACAGGCAGCAGCTGCTGAAGCGGCTGGCC
ACGTTTCAGGAGCTTACGGACTGGACGCCCAAGCCTGATGGGGTGGGAGAGGTGGAGTGGGCTAAGCGGGGCTGG
ATATGCCGTGGCAAGGAAACGGTGCGCTGTCTTCTTTGCCACAAGGAAGTGGTGGTGAAGTTGGAGCACAAGGAG
GTTGAGGGCCAGGATATATCGGCTCTTGCGTCGGCAGAAGTTGAAAATGCCTTGGTGGACAAGTATGCAGAGCTC
ATTGTTAGCTCACATCAACAAGACTGTCTTTGGCGCCGGCGCGGCTGCGATGATACTCTGCTTCGAATATCCTTT
TCCAACGCAAAGGCAACCTTTACCGCTCTCAGAGAGCGCTACGATGAATTGTGTACGCGCCACACCTTTCTCCCC
TATGAATTCAACTTGCGTCTCCCCAAGGAACTCGACATTGACCAGGTTCTCTCCCAACTACCGCCCGGCTTCTTC
ACCCGCACCGACAAACCTGCCAAGTCTGCCACCACCATTGCCACTTCAGCTGTCAGCCAGCCCGTCAACCGGGCG
GCCCTGGCCCTGGCTCTCACGGGCTGGCAGGGCCTCACGAACCGCCGCATGGGCGCCGTGGCCAATTCGGCCTCG
TGCCACACTTGTCTGCGCCGCCTGGGCCTCTGGATGTTTCGCAGCAAAGAGGTGGACGCAAACGGCCACATTGTG
ACGCCCGCCCCCATGGACCATCTCGACGCCCTGGCCGAACACCGCTTCTTTTGCCCGTGGAGAAGCCCCAAGGCG
CAGAGCAAGGGCGGCGCCGCACAAGCCGCCGGCCTGGCGGCATGGCAGGCCCTGCTGCAGAGCGTGCGCAACGAA
GCCAGCCTGCGCAGCGTCTACGCCGGCCGAGCCCAGCAGCTGCCAGCGACGGCGCGCCAGACAACGCCGAGTATT
GGCTCCGTGGCAGACGAGGGCGAGCCTAGCCTTGGCGTCGAGGCGGATGATGGGGCTCGGGATGCAAAGGACAAG
GAACGCTGGGCGCGGCTGCGCAAGGTGAAGAGTATGCTGAATACAAAGAAGCTGAGGAGGTCGACGGGGAAGCCA
GAGTCTATAAAGTCGAATCACTCGAGCGGGGGGTAG
Gene >OphauB2|7263
ATGCACGCCACCAAGCGCAAGTTCAACGCGCTGCTCCAAGAACTCACCTCGTCGCGCGCAGAGGCAAACTCTTGC
ACCGCCATGGACCCCGACTCCTCACCCATTAGCCACCAAGACCTACTCGCAAAGCGACGCCGGCTGGGATTCCCC
GAGGCCACGGCCCCCGTGCAGCCCGTCTTGTCGCTCTCGGCCCTCTCCAACAGCCCATCTCGCCGCCCCAGCACT
GCTGGGTCCGGCACGGCAGAGACGCTGTCCAAGTACTGTCCCGGAGACAGGCAGCAGCTGCTGAAGCGGCTGGCC
ACGTTTCAGGAGCTTACGGACTGGACGCCCAAGCCTGATGGGGTGGGAGAGGTGGAGTGGGCTAAGCGGGGCTGG
ATATGCCGTGGCAAGGAAACGGTGCGCTGTCTTCTTTGCCACAAGGAAGTGGTGGTGAAGTTGGAGCACAAGGAG
GTTGAGGGCCAGGATATATCGGCTCTTGCGTCGGCAGAAGTTGGTGGGTTGGGGTTCTTTGAGGAGGTAAAGGCT
GCTTGCTTGGTGACTAACCAGAGTCTAGAAAATGCCTTGGTGGACAAGTATGCAGAGCTCATTGTTAGCTCACAT
CAACAAGACTGTCTTTGGCGCCGGCGCGGCTGCGATGGTATACTACCCGTCTCCCACGTCTTGTTAAACTCTTAT
TTTCTAACCCTTGTTCAGATACTCTGCTTCGAATATCCTTTTCCAACGCAAAGGCAACCTTTACCGCTCTCAGAG
AGCGCTACGATGAATTGTGTACGCGCCACACCTTTCTCCCCTATGAATTCAACTTGCGTCTCCCCAAGGAACTCG
ACATTGACCAGGTTCTCTCCCAACTACCGCCCGGCTTCTTCACCCGCACCGACAAACCTGCCAAGTCTGCCACCA
CCATTGCCACTTCAGCTGTCAGCCAGCCCGTCAACCGGGCGGCCCTGGCCCTGGCTCTCACGGGCTGGCAGGGCC
TCACGAACCGCCGCATGGGCGCCGTGGCCAATTCGGCCTCGTGCCACACTTGTCTGCGCCGCCTGGGCCTCTGGA
TGTTTCGCAGCAAAGAGGTGGACGCAAACGGCCACATTGTGACGCCCGCCCCCATGGACCATCTCGACGCCCTGG
CCGAACACCGCTTCTTTTGCCCGTGGAGAAGCCCCAAGGCGCAGAGCAAGGGCGGCGCCGCACAAGCCGCCGGCC
TGGCGGCATGGCAGGCCCTGCTGCAGAGCGTGCGCAACGAAGCCAGCCTGCGCAGCGTCTACGCCGGCCGAGCCC
AGCAGCTGCCAGCGACGGCGCGCCAGACAACGCCGAGTATTGGCTCCGTGGCAGACGAGGGCGAGCCTAGCCTTG
GCGTCGAGGCGGATGATGGGGCTCGGGATGCAAAGGACAAGGAACGCTGGGCGCGGCTGCGCAAGGTGAAGAGTA
TGCTGAATACAAAGAAGCTGAGGAGGTCGACGGGGAAGCCAGAGTCTATAAAGTCGAATCACTCGAGCGGGGGGT
AG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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