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| Protein ID | OphauB2|7248 |
| Gene name | |
| Location | Contig_75:49489..50445 |
| Strand | + |
| Gene length (bp) | 956 |
| Transcript length (bp) | 897 |
| Coding sequence length (bp) | 897 |
| Protein length (aa) | 299 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04427 | Brix | Brix domain | 1.4E-29 | 93 | 267 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q6BYD9|IMP4_DEBHA | U3 small nucleolar ribonucleoprotein protein IMP4 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=IMP4 PE=3 SV=2 | 1 | 298 | 2.0E-121 |
| sp|Q755T8|IMP4_ASHGO | U3 small nucleolar ribonucleoprotein protein IMP4 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=IMP4 PE=3 SV=2 | 1 | 298 | 5.0E-120 |
| sp|Q6C804|IMP4_YARLI | U3 small nucleolar ribonucleoprotein protein IMP4 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=IMP4 PE=3 SV=1 | 1 | 298 | 5.0E-120 |
| sp|P53941|IMP4_YEAST | U3 small nucleolar ribonucleoprotein protein IMP4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=IMP4 PE=1 SV=1 | 1 | 298 | 6.0E-119 |
| sp|Q6FNN7|IMP4_CANGA | U3 small nucleolar ribonucleoprotein protein IMP4 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=IMP4 PE=3 SV=1 | 1 | 298 | 1.0E-115 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q6BYD9|IMP4_DEBHA | U3 small nucleolar ribonucleoprotein protein IMP4 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=IMP4 PE=3 SV=2 | 1 | 298 | 2.0E-121 |
| sp|Q755T8|IMP4_ASHGO | U3 small nucleolar ribonucleoprotein protein IMP4 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=IMP4 PE=3 SV=2 | 1 | 298 | 5.0E-120 |
| sp|Q6C804|IMP4_YARLI | U3 small nucleolar ribonucleoprotein protein IMP4 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=IMP4 PE=3 SV=1 | 1 | 298 | 5.0E-120 |
| sp|P53941|IMP4_YEAST | U3 small nucleolar ribonucleoprotein protein IMP4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=IMP4 PE=1 SV=1 | 1 | 298 | 6.0E-119 |
| sp|Q6FNN7|IMP4_CANGA | U3 small nucleolar ribonucleoprotein protein IMP4 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=IMP4 PE=3 SV=1 | 1 | 298 | 1.0E-115 |
| sp|O13823|IMP4_SCHPO | U3 small nucleolar ribonucleoprotein protein imp4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=imp4 PE=3 SV=1 | 1 | 290 | 6.0E-101 |
| sp|Q5R947|IMP4_PONAB | U3 small nucleolar ribonucleoprotein protein IMP4 OS=Pongo abelii GN=IMP4 PE=2 SV=2 | 12 | 298 | 7.0E-75 |
| sp|Q96G21|IMP4_HUMAN | U3 small nucleolar ribonucleoprotein protein IMP4 OS=Homo sapiens GN=IMP4 PE=1 SV=1 | 12 | 298 | 7.0E-75 |
| sp|Q5PQR5|IMP4_RAT | U3 small nucleolar ribonucleoprotein protein IMP4 OS=Rattus norvegicus GN=Imp4 PE=2 SV=1 | 12 | 298 | 7.0E-75 |
| sp|Q8VHZ7|IMP4_MOUSE | U3 small nucleolar ribonucleoprotein protein IMP4 OS=Mus musculus GN=Imp4 PE=2 SV=1 | 12 | 298 | 7.0E-75 |
| sp|Q0VD01|IMP4_BOVIN | U3 small nucleolar ribonucleoprotein protein IMP4 OS=Bos taurus GN=IMP4 PE=2 SV=1 | 12 | 298 | 8.0E-75 |
| sp|O62518|YHPK_CAEEL | Brix domain-containing protein ZK795.3 OS=Caenorhabditis elegans GN=ZK795.3 PE=3 SV=1 | 1 | 298 | 7.0E-72 |
| sp|Q5R631|RPF1_PONAB | Ribosome production factor 1 OS=Pongo abelii GN=RPF1 PE=2 SV=1 | 37 | 298 | 1.0E-32 |
| sp|Q9H9Y2|RPF1_HUMAN | Ribosome production factor 1 OS=Homo sapiens GN=RPF1 PE=1 SV=2 | 37 | 298 | 1.0E-32 |
| sp|Q7TND5|RPF1_MOUSE | Ribosome production factor 1 OS=Mus musculus GN=Rpf1 PE=2 SV=2 | 37 | 298 | 2.0E-32 |
| sp|Q5RJS9|RPF1_RAT | Ribosome production factor 1 OS=Rattus norvegicus GN=Rpf1 PE=2 SV=2 | 37 | 283 | 4.0E-32 |
| sp|Q8AVP1|RPF1_XENLA | Ribosome production factor 1 OS=Xenopus laevis GN=rpf1 PE=2 SV=1 | 37 | 298 | 1.0E-31 |
| sp|P54073|YUY1_CAEEL | Brix domain-containing protein F44G4.1 OS=Caenorhabditis elegans GN=F44G4.1 PE=3 SV=4 | 28 | 298 | 3.0E-30 |
| sp|Q9VKB4|RPF1_DROME | Probable ribosome production factor 1 OS=Drosophila melanogaster GN=CG6712 PE=2 SV=1 | 33 | 287 | 4.0E-29 |
| sp|Q6IQU6|RPF1_DANRE | Ribosome production factor 1 OS=Danio rerio GN=rpf1 PE=2 SV=1 | 37 | 283 | 6.0E-29 |
| sp|O14180|YDS4_SCHPO | Brix domain-containing protein C4F8.04 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC4F8.04 PE=3 SV=1 | 58 | 298 | 6.0E-24 |
| sp|P38805|RPF1_YEAST | Ribosome production factor 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPF1 PE=1 SV=1 | 1 | 298 | 1.0E-18 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0019843 | rRNA binding | Yes |
| GO:0006364 | rRNA processing | Yes |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0006725 | cellular aromatic compound metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0005488 | binding | No |
| GO:0003674 | molecular_function | No |
| GO:0006396 | RNA processing | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:0003723 | RNA binding | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0090304 | nucleic acid metabolic process | No |
| GO:0006139 | nucleobase-containing compound metabolic process | No |
| GO:0034470 | ncRNA processing | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0016072 | rRNA metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0009987 | cellular process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0003676 | nucleic acid binding | No |
| GO:0046483 | heterocycle metabolic process | No |
| GO:0034660 | ncRNA metabolic process | No |
| GO:0016070 | RNA metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauB2|7248 MIRKQARQRRDYLYRRALLLRDAEISEKRAKLRASLASGKPLDPTIANDKALRKDYQYDESAADAGITEQLDLDD EYAQLSGIVDPRVLVTTSRDPSARLSAFSKEIRLLLPTSIRMNRGNLILPDLVRSAKSAGLSDIVILHEHRGTPT ALTLSHFPHGPTLSFSLHNVVLRHDIPGSVRGTVSESYPHLIFDGFTTPLGNRVAKALKHIFPPREGITSKQKMG SRVVTFKNIDDSIEVRHHVFVQTGYDSVELAEVGPRMTMKMFEIRGGTLENKDGDVEWHLSQYTRTGKKKSYL* |
| Coding | >OphauB2|7248 ATGATTCGCAAGCAAGCTCGCCAAAGAAGAGACTATCTCTACCGCAGAGCCTTGCTCTTGCGCGACGCCGAAATC AGCGAGAAGAGGGCCAAACTTCGAGCATCCTTGGCTTCGGGCAAACCCCTTGATCCCACAATAGCCAACGACAAG GCATTACGAAAAGATTACCAATACGATGAATCGGCAGCAGATGCTGGCATCACAGAGCAACTAGACTTGGACGAT GAATATGCGCAGCTGTCGGGTATTGTCGACCCCCGAGTCCTCGTCACGACATCAAGAGATCCCTCAGCCAGGCTG TCAGCCTTCTCCAAGGAAATTCGACTTTTACTTCCAACGTCAATCCGCATGAATCGAGGAAATCTCATATTGCCA GACCTAGTCAGATCGGCCAAATCTGCTGGCCTGTCTGACATTGTGATACTGCACGAGCATCGCGGTACACCCACA GCCCTGACCCTGTCGCATTTTCCTCACGGTCCGACCTTGTCTTTTTCGCTTCACAACGTGGTGCTGCGACATGAC ATCCCGGGGAGTGTGCGTGGGACAGTCAGCGAGTCGTATCCTCATCTCATCTTTGACGGCTTCACAACACCTTTG GGCAACCGCGTCGCCAAGGCACTCAAGCATATATTCCCACCGAGAGAAGGCATTACCAGCAAGCAAAAGATGGGC AGCCGAGTGGTTACATTCAAGAATATTGACGACAGTATTGAAGTACGGCACCACGTCTTTGTGCAGACTGGATAC GACAGCGTCGAGCTCGCCGAGGTGGGACCTAGGATGACGATGAAGATGTTTGAGATTCGCGGCGGGACGCTGGAA AACAAAGACGGCGATGTTGAGTGGCACCTGTCACAATACACCAGGACAGGCAAGAAGAAGAGCTATCTGTGA |
| Transcript | >OphauB2|7248 ATGATTCGCAAGCAAGCTCGCCAAAGAAGAGACTATCTCTACCGCAGAGCCTTGCTCTTGCGCGACGCCGAAATC AGCGAGAAGAGGGCCAAACTTCGAGCATCCTTGGCTTCGGGCAAACCCCTTGATCCCACAATAGCCAACGACAAG GCATTACGAAAAGATTACCAATACGATGAATCGGCAGCAGATGCTGGCATCACAGAGCAACTAGACTTGGACGAT GAATATGCGCAGCTGTCGGGTATTGTCGACCCCCGAGTCCTCGTCACGACATCAAGAGATCCCTCAGCCAGGCTG TCAGCCTTCTCCAAGGAAATTCGACTTTTACTTCCAACGTCAATCCGCATGAATCGAGGAAATCTCATATTGCCA GACCTAGTCAGATCGGCCAAATCTGCTGGCCTGTCTGACATTGTGATACTGCACGAGCATCGCGGTACACCCACA GCCCTGACCCTGTCGCATTTTCCTCACGGTCCGACCTTGTCTTTTTCGCTTCACAACGTGGTGCTGCGACATGAC ATCCCGGGGAGTGTGCGTGGGACAGTCAGCGAGTCGTATCCTCATCTCATCTTTGACGGCTTCACAACACCTTTG GGCAACCGCGTCGCCAAGGCACTCAAGCATATATTCCCACCGAGAGAAGGCATTACCAGCAAGCAAAAGATGGGC AGCCGAGTGGTTACATTCAAGAATATTGACGACAGTATTGAAGTACGGCACCACGTCTTTGTGCAGACTGGATAC GACAGCGTCGAGCTCGCCGAGGTGGGACCTAGGATGACGATGAAGATGTTTGAGATTCGCGGCGGGACGCTGGAA AACAAAGACGGCGATGTTGAGTGGCACCTGTCACAATACACCAGGACAGGCAAGAAGAAGAGCTATCTGTGA |
| Gene | >OphauB2|7248 ATGATTGTAAGTCTGTTCTACACAATGACCCGTGTGTGTTCACCAAGGCTCACAGTGCGCAATAGCGCAAGCAAG CTCGCCAAAGAAGAGACTATCTCTACCGCAGAGCCTTGCTCTTGCGCGACGCCGAAATCAGCGAGAAGAGGGCCA AACTTCGAGCATCCTTGGCTTCGGGCAAACCCCTTGATCCCACAATAGCCAACGACAAGGCATTACGAAAAGATT ACCAATACGATGAATCGGCAGCAGATGCTGGCATCACAGAGCAACTAGACTTGGACGATGAATATGCGCAGCTGT CGGGTATTGTCGACCCCCGAGTCCTCGTCACGACATCAAGAGATCCCTCAGCCAGGCTGTCAGCCTTCTCCAAGG AAATTCGACTTTTACTTCCAACGTCAATCCGCATGAATCGAGGAAATCTCATATTGCCAGACCTAGTCAGATCGG CCAAATCTGCTGGCCTGTCTGACATTGTGATACTGCACGAGCATCGCGGTACACCCACAGCCCTGACCCTGTCGC ATTTTCCTCACGGTCCGACCTTGTCTTTTTCGCTTCACAACGTGGTGCTGCGACATGACATCCCGGGGAGTGTGC GTGGGACAGTCAGCGAGTCGTATCCTCATCTCATCTTTGACGGCTTCACAACACCTTTGGGCAACCGCGTCGCCA AGGCACTCAAGCATATATTCCCACCGAGAGAAGGCATTACCAGCAAGCAAAAGATGGGCAGCCGAGTGGTTACAT TCAAGAATATTGACGACAGTATTGAAGTACGGCACCACGTCTTTGTGCAGACTGGATACGACAGCGTCGAGCTCG CCGAGGTGGGACCTAGGATGACGATGAAGATGTTTGAGATTCGCGGCGGGACGCTGGAAAACAAAGACGGCGATG TTGAGTGGCACCTGTCACAATACACCAGGACAGGCAAGAAGAAGAGCTATCTGTGA |