© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauB2|7216 |
| Gene name | |
| Location | Contig_74:36784..37981 |
| Strand | - |
| Gene length (bp) | 1197 |
| Transcript length (bp) | 1197 |
| Coding sequence length (bp) | 1197 |
| Protein length (aa) | 399 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 1.8E-10 | 208 | 265 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P53883|NOP13_YEAST | Nucleolar protein 13 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NOP13 PE=1 SV=2 | 20 | 265 | 9.0E-39 |
| sp|Q09100|RNP24_SCHPO | RNA-binding protein rnp24 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rnp24 PE=3 SV=2 | 29 | 264 | 6.0E-36 |
| sp|P41891|GAR2_SCHPO | Protein gar2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gar2 PE=1 SV=2 | 138 | 264 | 4.0E-12 |
| sp|Q5RC80|RBM39_PONAB | RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE=2 SV=1 | 131 | 265 | 1.0E-10 |
| sp|Q8VH51|RBM39_MOUSE | RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE=1 SV=2 | 131 | 265 | 1.0E-10 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P53883|NOP13_YEAST | Nucleolar protein 13 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NOP13 PE=1 SV=2 | 20 | 265 | 9.0E-39 |
| sp|Q09100|RNP24_SCHPO | RNA-binding protein rnp24 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rnp24 PE=3 SV=2 | 29 | 264 | 6.0E-36 |
| sp|P41891|GAR2_SCHPO | Protein gar2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gar2 PE=1 SV=2 | 138 | 264 | 4.0E-12 |
| sp|Q5RC80|RBM39_PONAB | RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE=2 SV=1 | 131 | 265 | 1.0E-10 |
| sp|Q8VH51|RBM39_MOUSE | RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE=1 SV=2 | 131 | 265 | 1.0E-10 |
| sp|Q14498|RBM39_HUMAN | RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE=1 SV=2 | 131 | 265 | 1.0E-10 |
| sp|Q86U06|RBM23_HUMAN | Probable RNA-binding protein 23 OS=Homo sapiens GN=RBM23 PE=1 SV=1 | 131 | 265 | 6.0E-09 |
| sp|P27476|NSR1_YEAST | Nuclear localization sequence-binding protein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NSR1 PE=1 SV=1 | 86 | 264 | 1.0E-07 |
| sp|Q9ZQA8|PABP7_ARATH | Polyadenylate-binding protein 7 OS=Arabidopsis thaliana GN=PAB7 PE=2 SV=1 | 139 | 267 | 1.0E-07 |
| sp|Q5M9F1|RBM34_RAT | RNA-binding protein 34 OS=Rattus norvegicus GN=Rbm34 PE=1 SV=1 | 44 | 265 | 2.0E-07 |
| sp|Q8C5L7|RBM34_MOUSE | RNA-binding protein 34 OS=Mus musculus GN=Rbm34 PE=1 SV=1 | 74 | 265 | 3.0E-07 |
| sp|O74400|YOCE_SCHPO | Uncharacterized RNA-binding protein C4F6.14 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC4F6.14 PE=1 SV=1 | 203 | 265 | 5.0E-07 |
| sp|Q9WX37|RBPE_NOSS1 | Putative RNA-binding protein RbpE OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=rbpE PE=3 SV=3 | 208 | 259 | 1.0E-06 |
| sp|Q76LC6|RBM24_DANRE | RNA-binding protein 24 OS=Danio rerio GN=rbm24 PE=2 SV=1 | 207 | 265 | 2.0E-06 |
| sp|Q9BX46|RBM24_HUMAN | RNA-binding protein 24 OS=Homo sapiens GN=RBM24 PE=1 SV=1 | 207 | 265 | 2.0E-06 |
| sp|Q9I8B3|RB24B_XENLA | RNA-binding protein 24-B OS=Xenopus laevis GN=rbm24-b PE=2 SV=1 | 207 | 265 | 3.0E-06 |
| sp|Q6GQD3|RB24A_XENLA | RNA-binding protein 24-A OS=Xenopus laevis GN=rbm24-a PE=2 SV=1 | 207 | 265 | 4.0E-06 |
| sp|Q5ZMA3|RBM24_CHICK | RNA-binding protein 24 OS=Gallus gallus GN=RBM24 PE=2 SV=2 | 207 | 265 | 4.0E-06 |
| sp|Q5ZJX4|RBM38_CHICK | RNA-binding protein 38 OS=Gallus gallus GN=RBM38 PE=2 SV=1 | 207 | 265 | 4.0E-06 |
| sp|Q6P8A7|RBM24_XENTR | RNA-binding protein 24 OS=Xenopus tropicalis GN=rbm24 PE=2 SV=1 | 207 | 265 | 4.0E-06 |
| sp|Q9FNR1|RBG3_ARATH | Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis thaliana GN=RBG3 PE=2 SV=1 | 204 | 265 | 5.0E-06 |
| sp|D3Z4I3|RBM24_MOUSE | RNA-binding protein 24 OS=Mus musculus GN=Rbm24 PE=3 SV=1 | 207 | 265 | 9.0E-06 |
| sp|Q1DXH0|PABP_COCIM | Polyadenylate-binding protein, cytoplasmic and nuclear OS=Coccidioides immitis (strain RS) GN=PAB1 PE=3 SV=1 | 137 | 267 | 1.0E-05 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003723 | RNA binding | Yes |
| GO:0003674 | molecular_function | No |
| GO:0005488 | binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0003676 | nucleic acid binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 50 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauB2|7216 MTAKQRDSVEPEADTHAASTKRKAVVQEIQVDLSAPEPPSKRARRALKKGKSLDAKKQDSDDDDDDNQQDDRDDA DKSKPRSEHGVWIGNLPFMVTAPDLRKWLVDNSGGVITDESITRIKMPMSKIAAQDRSQKPSNKGFAYIDFEDAS HKLAAIALTETPFGGRQLLIKDSKSFEGRPAKAKEQAGGAVGSNGKSQVSDAHASPKIFVGNMSFKTTQDDLTRH FEKCGEIQWAKLATFEDSGKCKGYGWVTFKESEAAAWAVKGFVKIKEEIETEQDFDGDQDIGKDEVEEKKFKMRK WWVNRLLGRELKIELAEDDQTRYKKRFGKGSSNRQGIDRRTHGEHNARHRGDDEDAKASQQTKEQTTRPAVKKGY DIDVARRTGGLVKHTGTKATFDD* |
| Coding | >OphauB2|7216 ATGACTGCCAAGCAAAGGGACTCAGTCGAGCCTGAGGCTGACACGCATGCGGCATCGACAAAGCGCAAGGCTGTC GTGCAAGAAATCCAAGTCGACTTGTCGGCCCCAGAACCTCCGTCCAAGAGAGCCAGGCGCGCATTAAAAAAGGGC AAATCGCTTGATGCCAAAAAGCAAGACAGCGACGACGACGACGACGATAACCAACAAGACGATCGAGACGATGCA GACAAGTCTAAGCCCCGATCAGAACACGGTGTCTGGATCGGCAACCTGCCATTCATGGTGACTGCTCCTGACCTT CGAAAATGGCTTGTCGATAATTCGGGAGGCGTCATCACGGACGAGTCAATAACGCGCATCAAAATGCCCATGTCA AAAATTGCTGCTCAAGACAGGAGCCAGAAGCCCTCCAACAAGGGCTTTGCCTATATCGACTTTGAGGACGCCAGC CACAAACTTGCCGCTATAGCCCTGACAGAAACGCCCTTTGGCGGCCGGCAGCTTCTCATCAAGGACTCCAAATCA TTTGAGGGTCGTCCCGCAAAGGCAAAAGAGCAAGCAGGTGGTGCCGTGGGCTCTAATGGCAAATCTCAAGTCAGC GATGCGCATGCTAGTCCCAAGATTTTTGTCGGCAACATGAGCTTCAAAACAACCCAGGACGATTTGACTCGACAC TTTGAAAAGTGTGGAGAAATACAATGGGCAAAACTGGCTACTTTTGAGGACTCTGGAAAATGCAAAGGCTACGGC TGGGTAACATTTAAGGAGTCGGAAGCTGCAGCGTGGGCTGTCAAGGGCTTCGTCAAAATTAAAGAGGAAATCGAA ACAGAACAAGACTTTGACGGTGACCAAGATATAGGAAAAGACGAAGTTGAGGAAAAGAAGTTCAAGATGAGGAAA TGGTGGGTCAATAGATTGCTAGGAAGGGAGCTCAAAATCGAGTTGGCCGAAGACGACCAGACCCGGTATAAGAAG AGATTTGGCAAAGGAAGCAGCAATCGACAAGGCATAGACAGGCGGACTCACGGTGAGCACAACGCTAGACACCGA GGCGATGATGAAGACGCAAAGGCATCACAGCAGACAAAAGAGCAGACGACGAGGCCAGCCGTTAAAAAAGGATAT GACATAGATGTCGCCAGACGAACGGGTGGGCTAGTCAAGCACACCGGCACCAAGGCTACCTTTGACGACTAG |
| Transcript | >OphauB2|7216 ATGACTGCCAAGCAAAGGGACTCAGTCGAGCCTGAGGCTGACACGCATGCGGCATCGACAAAGCGCAAGGCTGTC GTGCAAGAAATCCAAGTCGACTTGTCGGCCCCAGAACCTCCGTCCAAGAGAGCCAGGCGCGCATTAAAAAAGGGC AAATCGCTTGATGCCAAAAAGCAAGACAGCGACGACGACGACGACGATAACCAACAAGACGATCGAGACGATGCA GACAAGTCTAAGCCCCGATCAGAACACGGTGTCTGGATCGGCAACCTGCCATTCATGGTGACTGCTCCTGACCTT CGAAAATGGCTTGTCGATAATTCGGGAGGCGTCATCACGGACGAGTCAATAACGCGCATCAAAATGCCCATGTCA AAAATTGCTGCTCAAGACAGGAGCCAGAAGCCCTCCAACAAGGGCTTTGCCTATATCGACTTTGAGGACGCCAGC CACAAACTTGCCGCTATAGCCCTGACAGAAACGCCCTTTGGCGGCCGGCAGCTTCTCATCAAGGACTCCAAATCA TTTGAGGGTCGTCCCGCAAAGGCAAAAGAGCAAGCAGGTGGTGCCGTGGGCTCTAATGGCAAATCTCAAGTCAGC GATGCGCATGCTAGTCCCAAGATTTTTGTCGGCAACATGAGCTTCAAAACAACCCAGGACGATTTGACTCGACAC TTTGAAAAGTGTGGAGAAATACAATGGGCAAAACTGGCTACTTTTGAGGACTCTGGAAAATGCAAAGGCTACGGC TGGGTAACATTTAAGGAGTCGGAAGCTGCAGCGTGGGCTGTCAAGGGCTTCGTCAAAATTAAAGAGGAAATCGAA ACAGAACAAGACTTTGACGGTGACCAAGATATAGGAAAAGACGAAGTTGAGGAAAAGAAGTTCAAGATGAGGAAA TGGTGGGTCAATAGATTGCTAGGAAGGGAGCTCAAAATCGAGTTGGCCGAAGACGACCAGACCCGGTATAAGAAG AGATTTGGCAAAGGAAGCAGCAATCGACAAGGCATAGACAGGCGGACTCACGGTGAGCACAACGCTAGACACCGA GGCGATGATGAAGACGCAAAGGCATCACAGCAGACAAAAGAGCAGACGACGAGGCCAGCCGTTAAAAAAGGATAT GACATAGATGTCGCCAGACGAACGGGTGGGCTAGTCAAGCACACCGGCACCAAGGCTACCTTTGACGACTAG |
| Gene | >OphauB2|7216 ATGACTGCCAAGCAAAGGGACTCAGTCGAGCCTGAGGCTGACACGCATGCGGCATCGACAAAGCGCAAGGCTGTC GTGCAAGAAATCCAAGTCGACTTGTCGGCCCCAGAACCTCCGTCCAAGAGAGCCAGGCGCGCATTAAAAAAGGGC AAATCGCTTGATGCCAAAAAGCAAGACAGCGACGACGACGACGACGATAACCAACAAGACGATCGAGACGATGCA GACAAGTCTAAGCCCCGATCAGAACACGGTGTCTGGATCGGCAACCTGCCATTCATGGTGACTGCTCCTGACCTT CGAAAATGGCTTGTCGATAATTCGGGAGGCGTCATCACGGACGAGTCAATAACGCGCATCAAAATGCCCATGTCA AAAATTGCTGCTCAAGACAGGAGCCAGAAGCCCTCCAACAAGGGCTTTGCCTATATCGACTTTGAGGACGCCAGC CACAAACTTGCCGCTATAGCCCTGACAGAAACGCCCTTTGGCGGCCGGCAGCTTCTCATCAAGGACTCCAAATCA TTTGAGGGTCGTCCCGCAAAGGCAAAAGAGCAAGCAGGTGGTGCCGTGGGCTCTAATGGCAAATCTCAAGTCAGC GATGCGCATGCTAGTCCCAAGATTTTTGTCGGCAACATGAGCTTCAAAACAACCCAGGACGATTTGACTCGACAC TTTGAAAAGTGTGGAGAAATACAATGGGCAAAACTGGCTACTTTTGAGGACTCTGGAAAATGCAAAGGCTACGGC TGGGTAACATTTAAGGAGTCGGAAGCTGCAGCGTGGGCTGTCAAGGGCTTCGTCAAAATTAAAGAGGAAATCGAA ACAGAACAAGACTTTGACGGTGACCAAGATATAGGAAAAGACGAAGTTGAGGAAAAGAAGTTCAAGATGAGGAAA TGGTGGGTCAATAGATTGCTAGGAAGGGAGCTCAAAATCGAGTTGGCCGAAGACGACCAGACCCGGTATAAGAAG AGATTTGGCAAAGGAAGCAGCAATCGACAAGGCATAGACAGGCGGACTCACGGTGAGCACAACGCTAGACACCGA GGCGATGATGAAGACGCAAAGGCATCACAGCAGACAAAAGAGCAGACGACGAGGCCAGCCGTTAAAAAAGGATAT GACATAGATGTCGCCAGACGAACGGGTGGGCTAGTCAAGCACACCGGCACCAAGGCTACCTTTGACGACTAG |