© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauB2|7128 |
| Gene name | |
| Location | Contig_71:88784..90601 |
| Strand | + |
| Gene length (bp) | 1817 |
| Transcript length (bp) | 1677 |
| Coding sequence length (bp) | 1677 |
| Protein length (aa) | 559 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF07690 | MFS_1 | Major Facilitator Superfamily | 5.6E-24 | 88 | 503 |
| PF00083 | Sugar_tr | Sugar (and other) transporter | 1.6E-06 | 73 | 202 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P25351|YCR3_YEAST | Uncharacterized membrane protein YCR023C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YCR023C PE=1 SV=2 | 48 | 557 | 3.0E-60 |
| sp|Q3EAQ5|PTR36_ARATH | Probable peptide/nitrate transporter At3g43790 OS=Arabidopsis thaliana GN=ZIFL2 PE=2 SV=2 | 48 | 510 | 7.0E-28 |
| sp|Q8RWN2|ZIF1_ARATH | Protein ZINC INDUCED FACILITATOR 1 OS=Arabidopsis thaliana GN=ZIF1 PE=1 SV=2 | 48 | 510 | 3.0E-26 |
| sp|Q94BZ1|ZIFL1_ARATH | Protein ZINC INDUCED FACILITATOR-LIKE 1 OS=Arabidopsis thaliana GN=ZIFL1 PE=2 SV=1 | 19 | 259 | 3.0E-20 |
| sp|P51564|TCR8_PASMD | Tetracycline resistance protein, class H OS=Pasteurella multocida GN=tetA PE=3 SV=1 | 81 | 214 | 8.0E-08 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P25351|YCR3_YEAST | Uncharacterized membrane protein YCR023C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YCR023C PE=1 SV=2 | 48 | 557 | 3.0E-60 |
| sp|Q3EAQ5|PTR36_ARATH | Probable peptide/nitrate transporter At3g43790 OS=Arabidopsis thaliana GN=ZIFL2 PE=2 SV=2 | 48 | 510 | 7.0E-28 |
| sp|Q8RWN2|ZIF1_ARATH | Protein ZINC INDUCED FACILITATOR 1 OS=Arabidopsis thaliana GN=ZIF1 PE=1 SV=2 | 48 | 510 | 3.0E-26 |
| sp|Q94BZ1|ZIFL1_ARATH | Protein ZINC INDUCED FACILITATOR-LIKE 1 OS=Arabidopsis thaliana GN=ZIFL1 PE=2 SV=1 | 19 | 259 | 3.0E-20 |
| sp|P51564|TCR8_PASMD | Tetracycline resistance protein, class H OS=Pasteurella multocida GN=tetA PE=3 SV=1 | 81 | 214 | 8.0E-08 |
| sp|P02980|TCR2_ECOLX | Tetracycline resistance protein, class B OS=Escherichia coli GN=tetA PE=1 SV=1 | 81 | 263 | 8.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0055085 | transmembrane transport | Yes |
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0016021 | integral component of membrane | Yes |
| GO:0110165 | cellular anatomical entity | No |
| GO:0009987 | cellular process | No |
| GO:0003674 | molecular_function | No |
| GO:0051179 | localization | No |
| GO:0005215 | transporter activity | No |
| GO:0008150 | biological_process | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0051234 | establishment of localization | No |
| GO:0005575 | cellular_component | No |
| GO:0006810 | transport | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 46 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 90 | 112 | 22 |
| 2 | 122 | 144 | 22 |
| 3 | 180 | 202 | 22 |
| 4 | 222 | 244 | 22 |
| 5 | 327 | 349 | 22 |
| 6 | 381 | 403 | 22 |
| 7 | 410 | 432 | 22 |
| 8 | 445 | 467 | 22 |
| 9 | 505 | 527 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauB2|7128 MSSSPNHDGGNGQTQALTARQTAETRGTEEDAEAANKVKWSHLPRKDQLTIITLARLSEPLVQTSLQAYMFYQLK WFDASLSDATISNQAGVLHASFTAAQFVTALLWSRIADSPWAGRKTVLLIGLVGTAISSLGFGFATHFYQALMFR IVGGITNGNVGVMRTMISEIIREKKFQPRAFLLLPMTFNIGVIVGPILGGVLSDPAESYPRLFGQVALFRSFPFA LPNIVSTIFLAVAAAAVWFGLEETSEGLRDAPPDMGIRIGHWLAARLCMCHTLHKSRHLGYGTIQTSPDMERPSP SASPKPSRRYTQRLPFRRIFTRNVSLTLFAHFFLNFHLGVFNALWFVFLSTPVWNPSSDPSHAPELPFRFTGGLG LPPRSVGFAMAILGAIGIPMQLFLYPDLAGRLGALLAWRLSLLCFPLAYFLIPYLAIVPSASPPPEPKTGLAIWL AICIILVIQVTGRTFSLPSQIILINNCSPHPSVLGTIHGLGQSVSSGARTIGPMIGGFVYGIGLGSGVVGLVWWA LSGIAICNCLASLLVREGDGHEIWLQGDDEDDE* |
| Coding | >OphauB2|7128 ATGAGCTCAAGTCCCAACCATGACGGAGGAAATGGTCAAACTCAAGCCCTCACTGCCAGGCAAACCGCCGAGACT CGAGGCACCGAGGAGGATGCTGAAGCCGCCAACAAGGTCAAATGGAGCCATCTGCCCCGGAAAGACCAGCTCACC ATCATCACCCTGGCACGGCTGAGCGAGCCTTTGGTGCAGACATCGTTACAGGCATACATGTTCTATCAACTCAAG TGGTTTGATGCATCGCTCTCCGATGCCACCATCTCTAACCAGGCCGGCGTGCTGCATGCCAGCTTCACCGCCGCC CAGTTTGTCACGGCCTTGCTTTGGAGCCGCATAGCCGACTCGCCCTGGGCCGGACGGAAGACGGTGTTGCTTATT GGACTGGTTGGAACCGCCATCTCCAGTCTCGGCTTTGGCTTCGCAACCCATTTCTACCAAGCCCTCATGTTTCGT ATCGTCGGCGGAATCACAAATGGCAATGTTGGCGTCATGCGTACCATGATTAGCGAAATCATCCGTGAAAAGAAA TTTCAGCCTCGCGCCTTTCTCCTCCTCCCCATGACCTTTAATATTGGCGTCATTGTGGGCCCTATACTCGGGGGT GTCTTGTCCGACCCAGCTGAGAGCTATCCCCGCCTCTTTGGCCAGGTCGCTCTATTCCGAAGCTTTCCCTTTGCG CTGCCCAACATAGTGAGCACTATATTCTTGGCCGTTGCTGCCGCCGCCGTCTGGTTCGGGCTTGAGGAGACGTCT GAGGGCTTGCGTGATGCCCCCCCAGACATGGGCATTCGCATTGGCCACTGGCTCGCCGCCAGACTGTGCATGTGC CACACCCTTCACAAGTCTCGGCACCTGGGATATGGCACCATACAAACGTCGCCCGACATGGAGCGTCCCTCCCCC TCGGCCAGCCCCAAGCCTAGTCGGCGGTATACACAACGGCTTCCTTTTAGACGCATCTTTACCCGCAATGTCTCC CTTACTCTTTTCGCGCACTTCTTTCTCAACTTTCACCTAGGAGTCTTCAATGCACTCTGGTTCGTCTTCCTGTCA ACACCCGTGTGGAATCCATCCTCAGATCCTTCCCACGCCCCTGAGCTGCCCTTTCGATTCACTGGAGGCCTTGGT CTGCCCCCCAGATCTGTTGGTTTCGCCATGGCCATCCTCGGTGCCATCGGGATTCCCATGCAGCTATTTCTCTAT CCTGATCTGGCTGGGCGCCTTGGTGCACTCCTGGCCTGGCGGCTCTCCCTCCTCTGCTTTCCACTAGCTTACTTT TTGATTCCCTACCTTGCCATCGTGCCCAGTGCTTCGCCACCGCCGGAGCCCAAGACGGGGCTTGCTATTTGGCTT GCTATTTGCATCATTCTCGTTATCCAAGTCACTGGCCGCACCTTTTCGCTGCCCAGCCAAATCATTCTCATCAAT AACTGCTCACCGCATCCAAGTGTCCTCGGCACTATTCATGGGCTAGGTCAAAGTGTTAGCAGTGGCGCTCGTACC ATTGGTCCCATGATTGGCGGCTTTGTTTATGGCATAGGGCTTGGCAGTGGAGTTGTTGGACTAGTATGGTGGGCT CTGAGTGGTATTGCCATCTGCAACTGCCTGGCAAGCCTGCTAGTTCGAGAAGGAGATGGCCACGAGATATGGCTC CAAGGCGACGACGAAGATGATGAATAA |
| Transcript | >OphauB2|7128 ATGAGCTCAAGTCCCAACCATGACGGAGGAAATGGTCAAACTCAAGCCCTCACTGCCAGGCAAACCGCCGAGACT CGAGGCACCGAGGAGGATGCTGAAGCCGCCAACAAGGTCAAATGGAGCCATCTGCCCCGGAAAGACCAGCTCACC ATCATCACCCTGGCACGGCTGAGCGAGCCTTTGGTGCAGACATCGTTACAGGCATACATGTTCTATCAACTCAAG TGGTTTGATGCATCGCTCTCCGATGCCACCATCTCTAACCAGGCCGGCGTGCTGCATGCCAGCTTCACCGCCGCC CAGTTTGTCACGGCCTTGCTTTGGAGCCGCATAGCCGACTCGCCCTGGGCCGGACGGAAGACGGTGTTGCTTATT GGACTGGTTGGAACCGCCATCTCCAGTCTCGGCTTTGGCTTCGCAACCCATTTCTACCAAGCCCTCATGTTTCGT ATCGTCGGCGGAATCACAAATGGCAATGTTGGCGTCATGCGTACCATGATTAGCGAAATCATCCGTGAAAAGAAA TTTCAGCCTCGCGCCTTTCTCCTCCTCCCCATGACCTTTAATATTGGCGTCATTGTGGGCCCTATACTCGGGGGT GTCTTGTCCGACCCAGCTGAGAGCTATCCCCGCCTCTTTGGCCAGGTCGCTCTATTCCGAAGCTTTCCCTTTGCG CTGCCCAACATAGTGAGCACTATATTCTTGGCCGTTGCTGCCGCCGCCGTCTGGTTCGGGCTTGAGGAGACGTCT GAGGGCTTGCGTGATGCCCCCCCAGACATGGGCATTCGCATTGGCCACTGGCTCGCCGCCAGACTGTGCATGTGC CACACCCTTCACAAGTCTCGGCACCTGGGATATGGCACCATACAAACGTCGCCCGACATGGAGCGTCCCTCCCCC TCGGCCAGCCCCAAGCCTAGTCGGCGGTATACACAACGGCTTCCTTTTAGACGCATCTTTACCCGCAATGTCTCC CTTACTCTTTTCGCGCACTTCTTTCTCAACTTTCACCTAGGAGTCTTCAATGCACTCTGGTTCGTCTTCCTGTCA ACACCCGTGTGGAATCCATCCTCAGATCCTTCCCACGCCCCTGAGCTGCCCTTTCGATTCACTGGAGGCCTTGGT CTGCCCCCCAGATCTGTTGGTTTCGCCATGGCCATCCTCGGTGCCATCGGGATTCCCATGCAGCTATTTCTCTAT CCTGATCTGGCTGGGCGCCTTGGTGCACTCCTGGCCTGGCGGCTCTCCCTCCTCTGCTTTCCACTAGCTTACTTT TTGATTCCCTACCTTGCCATCGTGCCCAGTGCTTCGCCACCGCCGGAGCCCAAGACGGGGCTTGCTATTTGGCTT GCTATTTGCATCATTCTCGTTATCCAAGTCACTGGCCGCACCTTTTCGCTGCCCAGCCAAATCATTCTCATCAAT AACTGCTCACCGCATCCAAGTGTCCTCGGCACTATTCATGGGCTAGGTCAAAGTGTTAGCAGTGGCGCTCGTACC ATTGGTCCCATGATTGGCGGCTTTGTTTATGGCATAGGGCTTGGCAGTGGAGTTGTTGGACTAGTATGGTGGGCT CTGAGTGGTATTGCCATCTGCAACTGCCTGGCAAGCCTGCTAGTTCGAGAAGGAGATGGCCACGAGATATGGCTC CAAGGCGACGACGAAGATGATGAATAA |
| Gene | >OphauB2|7128 ATGAGCTCAAGTCCCAACCATGACGGAGGAAATGGTCAAACTCAAGCCCTCACTGCCAGGCAAACCGCCGAGACT CGAGGCACCGAGGAGGATGCTGAAGCCGCCAACAAGGTCAAATGGAGCCATCTGCCCCGGAAAGACCAGCTCACC ATCATCACCCTGGCACGGCTGAGCGAGCCTTTGGTGCAGACATCGTTACAGGTGAGGCAAACCGCGTCAAGCCTC CAGTCTCTTGCCTCTGCAGACTCCGAGGAGGCCAGGCAGACGGCTTGACTGATAGTCTCTAGGCATACATGTTCT ATCAACTCAAGTGGTTTGATGCATCGCTCTCCGATGCCACCATCTCTAACCAGGCCGGCGTGCTGCATGCCAGCT TCACCGCCGCCCAGTTTGTCACGGCCTTGCTTTGGAGCCGCATAGCCGACTCGCCCTGGGCCGGACGGAAGACGG TGTTGCTTATTGGACTGGTTGGAACCGCCATCTCCAGTCTCGGCTTTGGCTTCGCAACCCATTTCTACCAAGCCC TCATGTTTCGTATCGTCGGCGGAATCACAAATGGCAATGTTGGCGTCATGCGTACCATGTAAGTTGACAGACCAA CTCATCCCCAACACGCTGCTTATGCATCGCCGTTAAGGATTAGCGAAATCATCCGTGAAAAGAAATTTCAGCCTC GCGCCTTTCTCCTCCTCCCCATGACCTTTAATATTGGCGTCATTGTGGGCCCTATACTCGGGGGTGTCTTGTCCG ACCCAGCTGAGAGCTATCCCCGCCTCTTTGGCCAGGTCGCTCTATTCCGAAGCTTTCCCTTTGCGCTGCCCAACA TAGTGAGCACTATATTCTTGGCCGTTGCTGCCGCCGCCGTCTGGTTCGGGCTTGAGGAGACGTCTGAGGGCTTGC GTGATGCCCCCCCAGACATGGGCATTCGCATTGGCCACTGGCTCGCCGCCAGACTGTGCATGTGCCACACCCTTC ACAAGTCTCGGCACCTGGGATATGGCACCATACAAACGTCGCCCGACATGGAGCGTCCCTCCCCCTCGGCCAGCC CCAAGCCTAGTCGGCGGTATACACAACGGCTTCCTTTTAGACGCATCTTTACCCGCAATGTCTCCCTTACTCTTT TCGCGCACTTCTTTCTCAACTTTCACCTAGGAGTCTTCAATGCACTCTGGTTCGTCTTCCTGTCAACACCCGTGT GGAATCCATCCTCAGATCCTTCCCACGCCCCTGAGCTGCCCTTTCGATTCACTGGAGGCCTTGGTCTGCCCCCCA GATCTGTTGGTTTCGCCATGGCCATCCTCGGTGCCATCGGGATTCCCATGCAGCTATTTCTCTATCCTGATCTGG CTGGGCGCCTTGGTGCACTCCTGGCCTGGCGGCTCTCCCTCCTCTGCTTTCCACTAGCTTACTTTTTGATTCCCT ACCTTGCCATCGTGCCCAGTGCTTCGCCACCGCCGGAGCCCAAGACGGGGCTTGCTATTTGGCTTGCTATTTGCA TCATTCTCGTTATCCAAGTCACTGGCCGCACCTTTTCGCTGCCCAGCCAAATCATTCTCATCAATAACTGCTCAC CGCATCCAAGTGTCCTCGGCACTATTCATGGGCTAGGTCAAAGTGTTAGCAGTGGCGCTCGTACCATTGGTCCCA TGATTGGCGGCTTTGTTTATGGCATAGGGCTTGGCAGTGGAGTTGTTGGACTAGTATGGTGGGCTCTGAGTGGTA TTGCCATCTGCAACTGCCTGGCAAGCCTGCTAGTTCGAGAAGGAGATGGCCACGAGATATGGCTCCAAGGCGACG ACGAAGATGATGAATAA |