Fungal Genomics

at Utrecht University

General Properties

Protein IDOphauB2|7124
Gene name
LocationContig_71:83452..84514
Strand-
Gene length (bp)1062
Transcript length (bp)888
Coding sequence length (bp)888
Protein length (aa) 296

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF04733 Coatomer_E Coatomer epsilon subunit 5.2E-62 8 288

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q5ZIK9|COPE_CHICK Coatomer subunit epsilon OS=Gallus gallus GN=COPE PE=2 SV=1 9 290 6.0E-34
sp|Q60445|COPE_CRIGR Coatomer subunit epsilon OS=Cricetulus griseus GN=COPE PE=2 SV=2 9 290 7.0E-33
sp|O89079|COPE_MOUSE Coatomer subunit epsilon OS=Mus musculus GN=Cope PE=1 SV=3 9 290 2.0E-32
sp|Q5RFR8|COPE_PONAB Coatomer subunit epsilon OS=Pongo abelii GN=COPE PE=2 SV=1 9 290 4.0E-31
sp|O14579|COPE_HUMAN Coatomer subunit epsilon OS=Homo sapiens GN=COPE PE=1 SV=3 9 290 4.0E-31
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Swissprot ID Swissprot Description Start End E-value
sp|Q5ZIK9|COPE_CHICK Coatomer subunit epsilon OS=Gallus gallus GN=COPE PE=2 SV=1 9 290 6.0E-34
sp|Q60445|COPE_CRIGR Coatomer subunit epsilon OS=Cricetulus griseus GN=COPE PE=2 SV=2 9 290 7.0E-33
sp|O89079|COPE_MOUSE Coatomer subunit epsilon OS=Mus musculus GN=Cope PE=1 SV=3 9 290 2.0E-32
sp|Q5RFR8|COPE_PONAB Coatomer subunit epsilon OS=Pongo abelii GN=COPE PE=2 SV=1 9 290 4.0E-31
sp|O14579|COPE_HUMAN Coatomer subunit epsilon OS=Homo sapiens GN=COPE PE=1 SV=3 9 290 4.0E-31
sp|Q28104|COPE_BOVIN Coatomer subunit epsilon OS=Bos taurus GN=COPE PE=1 SV=3 9 290 6.0E-31
sp|O74767|COPE_SCHPO Probable coatomer subunit epsilon OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sec28 PE=1 SV=1 5 253 5.0E-28
sp|Q9SA78|COPE1_ARATH Coatomer subunit epsilon-1 OS=Arabidopsis thaliana GN=At1g30630 PE=2 SV=1 10 268 7.0E-27
sp|Q9MAX6|COPE1_ORYSJ Coatomer subunit epsilon-1 OS=Oryza sativa subsp. japonica GN=COPE1 PE=2 SV=1 10 268 9.0E-26
sp|O64748|COPE2_ARATH Coatomer subunit epsilon-2 OS=Arabidopsis thaliana GN=At2g34840 PE=2 SV=1 10 284 3.0E-25
sp|P0C541|COPE2_ORYSJ Coatomer subunit epsilon-2 OS=Oryza sativa subsp. japonica GN=Os04g0644700 PE=3 SV=1 9 285 3.0E-24
sp|A2XY73|COPE2_ORYSI Coatomer subunit epsilon-2 OS=Oryza sativa subsp. indica GN=H0413E07.10 PE=3 SV=2 9 285 1.0E-23
sp|Q55FU2|COPE_DICDI Coatomer subunit epsilon OS=Dictyostelium discoideum GN=cope PE=3 SV=1 15 289 1.0E-16
sp|O62246|COPE_CAEEL Coatomer subunit epsilon OS=Caenorhabditis elegans GN=cope-1 PE=3 SV=1 9 286 2.0E-16
sp|P40509|COPE_YEAST Coatomer subunit epsilon OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SEC28 PE=1 SV=2 20 289 2.0E-07
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GO

(None)

SignalP

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SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 56 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >OphauB2|7124
MDPYSTEGELINIHNHFHQGQYQHVIDFDTSSFSPDNALPARILQLRARIALGQAKEVLAEIQGEQKPELQALSA
LAQCELGQTDAALETVTKLAASDAENSTVQIIGGTILEAAGQSEQALALLSQHQASLEAVALLAQIYLRQNRTDL
ALKEVTAARSWAQDSLLVNLAESWVGVRVGGEKYQQAFYVFEELAQAAATESVRSHVAQAICEIHLGRLEEAQAA
LEQALSKEPKFADAIANTIVLNTLLGTDTKELTETLKKVAPKHPFLLDLEEKSALFDKAAAKYSPKVAST*
Coding >OphauB2|7124
ATGGATCCATACTCGACAGAAGGCGAATTGATTAATATCCATAACCACTTTCACCAGGGCCAGTATCAGCATGTC
ATTGACTTTGACACGTCGTCCTTTTCTCCAGACAATGCTCTCCCTGCACGCATCCTTCAGCTTCGGGCACGGATC
GCCTTGGGCCAGGCGAAGGAGGTCCTCGCAGAAATTCAAGGCGAGCAGAAGCCTGAGCTTCAGGCGCTGAGTGCG
CTTGCTCAATGCGAGTTGGGACAGACAGATGCTGCTCTCGAGACGGTGACGAAGCTAGCTGCGTCGGATGCCGAG
AATTCCACCGTCCAAATAATCGGTGGCACCATTCTCGAGGCTGCCGGACAGTCGGAGCAAGCGCTTGCACTTCTC
TCACAACATCAGGCAAGCCTCGAAGCGGTTGCCCTTCTCGCTCAAATCTATTTACGACAGAATCGAACCGACCTC
GCCCTCAAAGAAGTCACAGCAGCCCGAAGCTGGGCCCAGGACAGTTTACTGGTTAATTTAGCTGAGTCCTGGGTC
GGGGTCAGGGTGGGCGGCGAAAAATACCAACAAGCATTCTATGTGTTCGAAGAGCTTGCTCAAGCTGCAGCAACT
GAATCAGTTCGCAGTCATGTCGCACAGGCTATATGTGAGATACACTTGGGTCGATTAGAAGAAGCGCAAGCAGCG
TTGGAGCAGGCATTGAGCAAAGAGCCCAAGTTTGCCGATGCAATTGCCAACACGATTGTTCTCAACACTCTGTTA
GGCACAGATACGAAGGAGCTTACCGAAACTCTTAAAAAGGTGGCACCAAAGCACCCGTTTCTGCTCGATTTGGAG
GAGAAGAGCGCCTTATTCGACAAGGCAGCGGCTAAATACAGCCCCAAGGTTGCTTCTACTTAG
Transcript >OphauB2|7124
ATGGATCCATACTCGACAGAAGGCGAATTGATTAATATCCATAACCACTTTCACCAGGGCCAGTATCAGCATGTC
ATTGACTTTGACACGTCGTCCTTTTCTCCAGACAATGCTCTCCCTGCACGCATCCTTCAGCTTCGGGCACGGATC
GCCTTGGGCCAGGCGAAGGAGGTCCTCGCAGAAATTCAAGGCGAGCAGAAGCCTGAGCTTCAGGCGCTGAGTGCG
CTTGCTCAATGCGAGTTGGGACAGACAGATGCTGCTCTCGAGACGGTGACGAAGCTAGCTGCGTCGGATGCCGAG
AATTCCACCGTCCAAATAATCGGTGGCACCATTCTCGAGGCTGCCGGACAGTCGGAGCAAGCGCTTGCACTTCTC
TCACAACATCAGGCAAGCCTCGAAGCGGTTGCCCTTCTCGCTCAAATCTATTTACGACAGAATCGAACCGACCTC
GCCCTCAAAGAAGTCACAGCAGCCCGAAGCTGGGCCCAGGACAGTTTACTGGTTAATTTAGCTGAGTCCTGGGTC
GGGGTCAGGGTGGGCGGCGAAAAATACCAACAAGCATTCTATGTGTTCGAAGAGCTTGCTCAAGCTGCAGCAACT
GAATCAGTTCGCAGTCATGTCGCACAGGCTATATGTGAGATACACTTGGGTCGATTAGAAGAAGCGCAAGCAGCG
TTGGAGCAGGCATTGAGCAAAGAGCCCAAGTTTGCCGATGCAATTGCCAACACGATTGTTCTCAACACTCTGTTA
GGCACAGATACGAAGGAGCTTACCGAAACTCTTAAAAAGGTGGCACCAAAGCACCCGTTTCTGCTCGATTTGGAG
GAGAAGAGCGCCTTATTCGACAAGGCAGCGGCTAAATACAGCCCCAAGGTTGCTTCTACTTAG
Gene >OphauB2|7124
ATGGATCCATACTCGACAGAAGGCGAATTGATTAATATCCATAACCACTTTCACCAGGGCCAGTATCAGCATGTC
ATTGACTTTGACACGTCGTCCTTTTCTCCAGACAATGCTCTCCCTGCACGCATCCTTCAGCTTCGGGCACGGATC
GCCTTGGGCCAGGCGAAGGAGGTCCTCGCAGAAATTCAAGGCGAGCAGAAGCCTGAGCTTCAGGCGCTGAGTGCG
CTTGCTCAATGCGAGTTGGGACAGACAGATGCTGCTCTCGAGACGGTGACGAAGCTAGCTGCGTCGGATGCCGAG
AATTCCACCGTCCAAATAATCGGTGGCACCATTCTCGAGGCTGCCGGACAGTCGGAGCAAGCGCTTGCACTTCTC
TCACAACATCAGGCAAGCCGTAAGTGCTTGTGGCTCTGGCCTTCTTCTCTTATGGTGACTAAAGCAAAAGTGTTA
TAGTCGAAGCGGTTGCCCTTCTCGCTCAAATCTATTTACGACAGAATCGAACCGACCTCGCCCTCAAAGAAGTCA
CAGCAGCCCGAAGCTGGGCCCAGGACAGTTTACTGGTTAATTTAGCTGAGTCCTGGGTCGGGGTCAGGGTGGTGA
GCAGCATCTCTTTCGTTTCCCAATGCCCCTGGACGTTCGCGACTGACGGGATACTTCAGGGCGGCGAAAAATACC
AACAAGCATTCTATGTGTTCGAAGAGCTTGCTCAAGCTGCAGCAACTGAATCAGTTCGCAGTCATGTCGCACAGG
CTATATGTGAGATACACTTGGGTCGATTAGAAGAAGCGCAAGCAGCGTTGGAGCAGGCATTGAGCAAAGAGCCCA
AGTTTGCCGATGCAATTGCCAACACGATTGTTCTCAACACTCTGTTAGGCACAGATACGAAGGAGCTTACCGAGT
AAGTAGCAACACCCCCAGCAGCCTTGGAACGTCACGTTGACAATTTCAAGAACTCTTAAAAAGGTGGCACCAAAG
CACCCGTTTCTGCTCGATTTGGAGGAGAAGAGCGCCTTATTCGACAAGGCAGCGGCTAAATACAGCCCCAAGGTT
GCTTCTACTTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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