© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauB2|7029 |
| Gene name | |
| Location | Contig_7:201503..202514 |
| Strand | + |
| Gene length (bp) | 1011 |
| Transcript length (bp) | 1011 |
| Coding sequence length (bp) | 1011 |
| Protein length (aa) | 337 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF13621 | Cupin_8 | Cupin-like domain | 5.6E-27 | 148 | 336 |
| PF08007 | JmjC_2 | JmjC domain | 9.2E-05 | 250 | 322 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q54FG7|JMJCF_DICDI | JmjC domain-containing protein F OS=Dictyostelium discoideum GN=jcdF PE=3 SV=1 | 177 | 319 | 2.0E-14 |
| sp|Q8RWR1|JMJ30_ARATH | Putative lysine-specific demethylase JMJD5 OS=Arabidopsis thaliana GN=JMJD5 PE=2 SV=1 | 162 | 335 | 1.0E-10 |
| sp|B5XF11|KDM8_SALSA | Lysine-specific demethylase 8 OS=Salmo salar GN=kdm8 PE=2 SV=1 | 177 | 335 | 3.0E-09 |
| sp|P0C872|JMJD7_MOUSE | JmjC domain-containing protein 7 OS=Mus musculus GN=Jmjd7 PE=1 SV=1 | 185 | 335 | 5.0E-09 |
| sp|A8E534|KDM8_DANRE | Lysine-specific demethylase 8 OS=Danio rerio GN=kdm8 PE=2 SV=1 | 177 | 334 | 9.0E-09 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q54FG7|JMJCF_DICDI | JmjC domain-containing protein F OS=Dictyostelium discoideum GN=jcdF PE=3 SV=1 | 177 | 319 | 2.0E-14 |
| sp|Q8RWR1|JMJ30_ARATH | Putative lysine-specific demethylase JMJD5 OS=Arabidopsis thaliana GN=JMJD5 PE=2 SV=1 | 162 | 335 | 1.0E-10 |
| sp|B5XF11|KDM8_SALSA | Lysine-specific demethylase 8 OS=Salmo salar GN=kdm8 PE=2 SV=1 | 177 | 335 | 3.0E-09 |
| sp|P0C872|JMJD7_MOUSE | JmjC domain-containing protein 7 OS=Mus musculus GN=Jmjd7 PE=1 SV=1 | 185 | 335 | 5.0E-09 |
| sp|A8E534|KDM8_DANRE | Lysine-specific demethylase 8 OS=Danio rerio GN=kdm8 PE=2 SV=1 | 177 | 334 | 9.0E-09 |
| sp|B2GUS6|KDM8_XENTR | Lysine-specific demethylase 8 OS=Xenopus tropicalis GN=kdm8 PE=2 SV=1 | 177 | 334 | 9.0E-09 |
| sp|P0C870|JMJD7_HUMAN | JmjC domain-containing protein 7 OS=Homo sapiens GN=JMJD7 PE=1 SV=1 | 124 | 335 | 9.0E-09 |
| sp|Q55DF5|JMJCD_DICDI | JmjC domain-containing protein D OS=Dictyostelium discoideum GN=jcdD PE=3 SV=1 | 177 | 320 | 6.0E-08 |
| sp|Q8BLR9|HIF1N_MOUSE | Hypoxia-inducible factor 1-alpha inhibitor OS=Mus musculus GN=Hif1an PE=1 SV=2 | 198 | 336 | 1.0E-07 |
| sp|Q9NWT6|HIF1N_HUMAN | Hypoxia-inducible factor 1-alpha inhibitor OS=Homo sapiens GN=HIF1AN PE=1 SV=2 | 198 | 336 | 2.0E-07 |
| sp|P59723|HIF1N_DANRE | Hypoxia-inducible factor 1-alpha inhibitor OS=Danio rerio GN=hif1an PE=2 SV=2 | 198 | 336 | 3.0E-07 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 20 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauB2|7029 MKRLPLGFSIRQWPRRLSGTFRLSAPSRVNLATPWSNTQADVEAFRQNALIPNKPLLFQRETGSPSQHLQASEKW FALDTTGTRVLSPYITDASLETLFPYELVQQSQDILRAIASFRDWLLESVSITNTVLAGIVQAALDEAQAFTQLN APLSLLIKALEFNTNQRAKNQPTLELYVAQAGIENLPQFLKDDLKVPWLLQEAGKGDVYGSSIWLGTEPTYSPLH RDPNPNLFCQLCGDKSVRLMPPTVGNHLYFLVQAAIQQQGNSRIRSTEMMEGKERTVLHEAVWNSNHYPVEMHQA NLGPGDALFIPNGWWHSVKSAKSDGQLNGSVNWWFR* |
| Coding | >OphauB2|7029 ATGAAGAGGCTCCCATTGGGATTCAGCATCCGGCAATGGCCGAGGCGTCTCTCAGGCACCTTCAGGCTCAGCGCA CCGTCACGAGTTAACTTGGCCACACCGTGGTCCAATACGCAGGCAGACGTTGAAGCTTTTCGACAGAATGCTCTG ATTCCCAACAAACCTCTGCTGTTCCAGAGAGAAACAGGATCTCCGAGTCAGCATCTCCAGGCCTCAGAAAAGTGG TTTGCTCTAGATACTACCGGCACGCGTGTTCTGTCTCCCTATATAACAGATGCTTCGCTTGAAACATTGTTTCCG TACGAATTGGTCCAGCAATCACAGGATATATTGAGGGCTATTGCCAGCTTTCGAGACTGGCTCTTGGAATCTGTC TCCATCACCAATACGGTTCTAGCAGGCATCGTGCAAGCAGCCCTCGATGAAGCCCAAGCCTTTACTCAACTGAAT GCCCCGCTGAGTCTCCTTATTAAGGCCCTTGAATTCAACACGAATCAAAGGGCCAAGAACCAGCCCACATTGGAG CTATACGTAGCTCAAGCTGGGATTGAAAACTTGCCTCAGTTTCTAAAAGACGACCTCAAAGTACCTTGGCTGTTG CAAGAAGCTGGAAAAGGCGACGTGTACGGCTCTTCGATCTGGCTTGGTACTGAGCCGACCTACTCGCCCCTCCAT AGAGATCCGAACCCAAATCTCTTTTGCCAATTATGTGGCGACAAAAGCGTCAGGCTTATGCCGCCGACAGTGGGA AATCATTTGTACTTTCTGGTGCAGGCAGCCATTCAACAGCAGGGAAACAGCCGCATCCGCTCCACAGAGATGATG GAGGGCAAGGAGAGAACAGTGCTACACGAGGCCGTTTGGAATAGCAATCACTACCCAGTCGAGATGCACCAAGCA AATCTAGGCCCTGGAGACGCTCTGTTCATTCCCAATGGGTGGTGGCACTCGGTAAAGAGCGCCAAATCTGACGGT CAGCTCAATGGTTCCGTTAACTGGTGGTTTCGATGA |
| Transcript | >OphauB2|7029 ATGAAGAGGCTCCCATTGGGATTCAGCATCCGGCAATGGCCGAGGCGTCTCTCAGGCACCTTCAGGCTCAGCGCA CCGTCACGAGTTAACTTGGCCACACCGTGGTCCAATACGCAGGCAGACGTTGAAGCTTTTCGACAGAATGCTCTG ATTCCCAACAAACCTCTGCTGTTCCAGAGAGAAACAGGATCTCCGAGTCAGCATCTCCAGGCCTCAGAAAAGTGG TTTGCTCTAGATACTACCGGCACGCGTGTTCTGTCTCCCTATATAACAGATGCTTCGCTTGAAACATTGTTTCCG TACGAATTGGTCCAGCAATCACAGGATATATTGAGGGCTATTGCCAGCTTTCGAGACTGGCTCTTGGAATCTGTC TCCATCACCAATACGGTTCTAGCAGGCATCGTGCAAGCAGCCCTCGATGAAGCCCAAGCCTTTACTCAACTGAAT GCCCCGCTGAGTCTCCTTATTAAGGCCCTTGAATTCAACACGAATCAAAGGGCCAAGAACCAGCCCACATTGGAG CTATACGTAGCTCAAGCTGGGATTGAAAACTTGCCTCAGTTTCTAAAAGACGACCTCAAAGTACCTTGGCTGTTG CAAGAAGCTGGAAAAGGCGACGTGTACGGCTCTTCGATCTGGCTTGGTACTGAGCCGACCTACTCGCCCCTCCAT AGAGATCCGAACCCAAATCTCTTTTGCCAATTATGTGGCGACAAAAGCGTCAGGCTTATGCCGCCGACAGTGGGA AATCATTTGTACTTTCTGGTGCAGGCAGCCATTCAACAGCAGGGAAACAGCCGCATCCGCTCCACAGAGATGATG GAGGGCAAGGAGAGAACAGTGCTACACGAGGCCGTTTGGAATAGCAATCACTACCCAGTCGAGATGCACCAAGCA AATCTAGGCCCTGGAGACGCTCTGTTCATTCCCAATGGGTGGTGGCACTCGGTAAAGAGCGCCAAATCTGACGGT CAGCTCAATGGTTCCGTTAACTGGTGGTTTCGATGA |
| Gene | >OphauB2|7029 ATGAAGAGGCTCCCATTGGGATTCAGCATCCGGCAATGGCCGAGGCGTCTCTCAGGCACCTTCAGGCTCAGCGCA CCGTCACGAGTTAACTTGGCCACACCGTGGTCCAATACGCAGGCAGACGTTGAAGCTTTTCGACAGAATGCTCTG ATTCCCAACAAACCTCTGCTGTTCCAGAGAGAAACAGGATCTCCGAGTCAGCATCTCCAGGCCTCAGAAAAGTGG TTTGCTCTAGATACTACCGGCACGCGTGTTCTGTCTCCCTATATAACAGATGCTTCGCTTGAAACATTGTTTCCG TACGAATTGGTCCAGCAATCACAGGATATATTGAGGGCTATTGCCAGCTTTCGAGACTGGCTCTTGGAATCTGTC TCCATCACCAATACGGTTCTAGCAGGCATCGTGCAAGCAGCCCTCGATGAAGCCCAAGCCTTTACTCAACTGAAT GCCCCGCTGAGTCTCCTTATTAAGGCCCTTGAATTCAACACGAATCAAAGGGCCAAGAACCAGCCCACATTGGAG CTATACGTAGCTCAAGCTGGGATTGAAAACTTGCCTCAGTTTCTAAAAGACGACCTCAAAGTACCTTGGCTGTTG CAAGAAGCTGGAAAAGGCGACGTGTACGGCTCTTCGATCTGGCTTGGTACTGAGCCGACCTACTCGCCCCTCCAT AGAGATCCGAACCCAAATCTCTTTTGCCAATTATGTGGCGACAAAAGCGTCAGGCTTATGCCGCCGACAGTGGGA AATCATTTGTACTTTCTGGTGCAGGCAGCCATTCAACAGCAGGGAAACAGCCGCATCCGCTCCACAGAGATGATG GAGGGCAAGGAGAGAACAGTGCTACACGAGGCCGTTTGGAATAGCAATCACTACCCAGTCGAGATGCACCAAGCA AATCTAGGCCCTGGAGACGCTCTGTTCATTCCCAATGGGTGGTGGCACTCGGTAAAGAGCGCCAAATCTGACGGT CAGCTCAATGGTTCCGTTAACTGGTGGTTTCGATGA |