Protein ID | OphauB2|702 |
Gene name | |
Location | Contig_113:34359..35789 |
Strand | - |
Gene length (bp) | 1430 |
Transcript length (bp) | 1317 |
Coding sequence length (bp) | 1317 |
Protein length (aa) | 439 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF02469 | Fasciclin | Fasciclin domain | 3.8E-15 | 113 | 245 |
PF02469 | Fasciclin | Fasciclin domain | 2.1E-23 | 259 | 406 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|Q8CFM6|STAB2_RAT | Stabilin-2 (Fragment) OS=Rattus norvegicus GN=Stab2 PE=1 SV=1 | 140 | 333 | 2.0E-07 |
sp|Q8WWQ8|STAB2_HUMAN | Stabilin-2 OS=Homo sapiens GN=STAB2 PE=1 SV=3 | 102 | 407 | 4.0E-07 |
SignalP signal predicted | Location | Score |
---|---|---|
Yes | 1 - 15 | 0.999749 |
Gene cluster ID | Type of secondary metabolism gene |
---|---|
Cluster 5 | (None) |
Orthofinder run ID | 4 |
Orthogroup | 2136 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >OphauB2|702 MKAALLVSSLIFAQAVPAPDGLPQQHPLGHVTQSRGQSKPGFWPSGLMSSTASNAVDQTVEAFESALEAAQRAAS RLSHRLEAALDEHGDGGHKHRDWSGKTIYQQIHACKYTSRFAKLVDKYPDIVKLLNGTHRDSNITLFVPVDKAFE DPHRGHKHYDDDDKEATEKLLRYHIGIGEYPALRILATNTLPTALHQERLGGDAQRLRTSVGLGGVEVNFYSKVV AADFKASNGIIHGVNHILAPPPPVGLLLTAFPSHFSTLLLAYEKTDFVNFVHGVHMPGGSTVFAPSNGAFTRLGE KTNSFLFNTGSGRKYLSALLKYHIVPNATLYSDAYYDHVDSETKPLASRREHYDLTTLLGDSRVSADVLRWAGFA FFRINGFAHVSVRDGVAGNGVVQVLDSVLIPPHKHSATATDNDSDTAGSMDVEELKARLEPYL* |
Coding | >OphauB2|702 ATGAAGGCTGCACTTTTAGTATCTAGTCTGATCTTTGCGCAAGCCGTGCCAGCGCCAGACGGCTTGCCTCAGCAG CATCCTCTTGGCCATGTTACGCAAAGCCGAGGACAGTCCAAGCCCGGCTTTTGGCCCAGCGGGCTCATGTCGAGC ACCGCTAGCAATGCAGTAGACCAGACTGTGGAAGCCTTTGAATCCGCCCTCGAGGCCGCCCAACGCGCTGCTTCT CGTCTCTCGCATCGACTGGAAGCCGCCTTGGATGAGCATGGCGACGGCGGACACAAGCATCGCGACTGGAGTGGC AAGACGATTTACCAGCAGATCCACGCATGCAAGTACACGTCGCGCTTTGCAAAGCTGGTCGACAAGTATCCCGAC ATTGTCAAGCTGCTCAACGGCACGCACCGAGACTCCAACATTACGCTCTTTGTGCCTGTTGACAAGGCTTTTGAA GACCCGCATCGTGGCCATAAGCACTACGACGACGATGACAAGGAGGCGACTGAGAAGCTGCTCAGGTACCACATT GGCATTGGGGAGTATCCCGCCCTCCGTATCCTAGCAACCAATACGCTGCCCACGGCGCTCCATCAAGAACGCTTG GGAGGCGATGCCCAGCGGCTGCGCACGAGCGTCGGCCTCGGCGGTGTCGAAGTCAACTTTTATAGCAAAGTAGTT GCCGCCGATTTTAAAGCCTCCAACGGCATCATTCATGGCGTCAACCACATCCTCGCACCGCCACCCCCCGTCGGA CTCCTCCTGACCGCATTTCCCAGCCACTTTTCCACTCTGTTACTGGCCTACGAAAAGACGGATTTTGTAAACTTT GTCCACGGCGTGCACATGCCTGGCGGAAGCACCGTCTTTGCCCCCAGCAACGGCGCCTTTACTCGCCTCGGCGAA AAGACCAACTCATTCCTCTTCAACACGGGATCGGGGCGCAAGTACTTGAGCGCGCTGCTCAAATATCACATTGTG CCCAATGCCACGCTCTATAGCGACGCCTACTACGACCACGTAGATAGCGAGACGAAGCCTCTGGCGTCTCGGCGG GAGCACTACGACTTGACGACGCTGCTCGGAGACTCTCGCGTCAGCGCCGACGTGCTGAGGTGGGCAGGCTTTGCC TTTTTCCGAATCAATGGCTTTGCCCACGTCAGTGTGCGTGATGGCGTGGCGGGGAATGGAGTCGTGCAAGTGCTC GACTCGGTGCTGATTCCGCCTCACAAGCACTCGGCTACTGCGACTGACAACGACTCGGACACGGCGGGTAGCATG GATGTCGAGGAGCTCAAAGCCAGGCTAGAACCCTATCTCTGA |
Transcript | >OphauB2|702 ATGAAGGCTGCACTTTTAGTATCTAGTCTGATCTTTGCGCAAGCCGTGCCAGCGCCAGACGGCTTGCCTCAGCAG CATCCTCTTGGCCATGTTACGCAAAGCCGAGGACAGTCCAAGCCCGGCTTTTGGCCCAGCGGGCTCATGTCGAGC ACCGCTAGCAATGCAGTAGACCAGACTGTGGAAGCCTTTGAATCCGCCCTCGAGGCCGCCCAACGCGCTGCTTCT CGTCTCTCGCATCGACTGGAAGCCGCCTTGGATGAGCATGGCGACGGCGGACACAAGCATCGCGACTGGAGTGGC AAGACGATTTACCAGCAGATCCACGCATGCAAGTACACGTCGCGCTTTGCAAAGCTGGTCGACAAGTATCCCGAC ATTGTCAAGCTGCTCAACGGCACGCACCGAGACTCCAACATTACGCTCTTTGTGCCTGTTGACAAGGCTTTTGAA GACCCGCATCGTGGCCATAAGCACTACGACGACGATGACAAGGAGGCGACTGAGAAGCTGCTCAGGTACCACATT GGCATTGGGGAGTATCCCGCCCTCCGTATCCTAGCAACCAATACGCTGCCCACGGCGCTCCATCAAGAACGCTTG GGAGGCGATGCCCAGCGGCTGCGCACGAGCGTCGGCCTCGGCGGTGTCGAAGTCAACTTTTATAGCAAAGTAGTT GCCGCCGATTTTAAAGCCTCCAACGGCATCATTCATGGCGTCAACCACATCCTCGCACCGCCACCCCCCGTCGGA CTCCTCCTGACCGCATTTCCCAGCCACTTTTCCACTCTGTTACTGGCCTACGAAAAGACGGATTTTGTAAACTTT GTCCACGGCGTGCACATGCCTGGCGGAAGCACCGTCTTTGCCCCCAGCAACGGCGCCTTTACTCGCCTCGGCGAA AAGACCAACTCATTCCTCTTCAACACGGGATCGGGGCGCAAGTACTTGAGCGCGCTGCTCAAATATCACATTGTG CCCAATGCCACGCTCTATAGCGACGCCTACTACGACCACGTAGATAGCGAGACGAAGCCTCTGGCGTCTCGGCGG GAGCACTACGACTTGACGACGCTGCTCGGAGACTCTCGCGTCAGCGCCGACGTGCTGAGGTGGGCAGGCTTTGCC TTTTTCCGAATCAATGGCTTTGCCCACGTCAGTGTGCGTGATGGCGTGGCGGGGAATGGAGTCGTGCAAGTGCTC GACTCGGTGCTGATTCCGCCTCACAAGCACTCGGCTACTGCGACTGACAACGACTCGGACACGGCGGGTAGCATG GATGTCGAGGAGCTCAAAGCCAGGCTAGAACCCTATCTCTGA |
Gene | >OphauB2|702 ATGAAGGCTGCACTTTTAGTATCTAGTCTGATCTTTGCGCAAGCCGTGCCAGCGCCAGACGGCTTGCCTCAGCAG CATCCTCTTGGCCATGTTACGCAAAGCCGAGGACAGTCCAAGCCCGGCTTTTGGCCCAGCGGGCTCATGTCGAGC ACCGCTAGCAATGCAGTAGACCAGACTGTGGAAGCCTTTGAATCCGCCCTCGAGGCCGCCCAACGCGCTGCTTCT CGTCTCTCGCATCGACTGGAAGCCGCCTTGGATGAGCATGGCGACGGCGGACACAAGCATCGCGACTGGAGTGGC AAGACGATTTACCAGCAGATCCACGCATGCAAGTACACGTCGCGCTTTGCAAAGCTGGTCGACAAGTATCCCGAC ATTGTCAAGCTGCTCAACGGCACGCACCGAGACTCCAACATTACGCTCTTTGTGCCTGTTGACAAGGCTTTTGAA GACCCGCATCGTGGCCATAAGCACTACGACGACGATGACAAGGAGGCGACTGAGAAGCTGCTCAGGTACCACATT GGCATTGGGGAGTATCCCGCCCTCCGTATCCTAGCAACCAATACGCTGCCCACGGCGCTCCATCAAGAACGCTTG GGAGGCGATGCCCAGCGGCTGCGCACGAGCGTCGGCCTCGGCGGTGTCGAAGTCAACTTTTATAGCAAAGTAGTT GCCGCCGATTTTGTATGTGCCCTCACGACTAACCATGTCTGACCGTTTTTTTTTTTTTTTGTTTTTTTTTCTGGT TTTTTTTTACGTCTTCTTTTGCTAAACTCTCATCTTTCTCTTCTTACTAGAAAGCCTCCAACGGCATCATTCATG GCGTCAACCACATCCTCGCACCGCCACCCCCCGTCGGACTCCTCCTGACCGCATTTCCCAGCCACTTTTCCACTC TGTTACTGGCCTACGAAAAGACGGATTTTGTAAACTTTGTCCACGGCGTGCACATGCCTGGCGGAAGCACCGTCT TTGCCCCCAGCAACGGCGCCTTTACTCGCCTCGGCGAAAAGACCAACTCATTCCTCTTCAACACGGGATCGGGGC GCAAGTACTTGAGCGCGCTGCTCAAATATCACATTGTGCCCAATGCCACGCTCTATAGCGACGCCTACTACGACC ACGTAGATAGCGAGACGAAGCCTCTGGCGTCTCGGCGGGAGCACTACGACTTGACGACGCTGCTCGGAGACTCTC GCGTCAGCGCCGACGTGCTGAGGTGGGCAGGCTTTGCCTTTTTCCGAATCAATGGCTTTGCCCACGTCAGTGTGC GTGATGGCGTGGCGGGGAATGGAGTCGTGCAAGTGCTCGACTCGGTGCTGATTCCGCCTCACAAGCACTCGGCTA CTGCGACTGACAACGACTCGGACACGGCGGGTAGCATGGATGTCGAGGAGCTCAAAGCCAGGCTAGAACCCTATC TCTGA |