Fungal Genomics

at Utrecht University

General Properties

Protein IDOphauB2|7007
Gene name
LocationContig_7:139056..139986
Strand-
Gene length (bp)930
Transcript length (bp)879
Coding sequence length (bp)879
Protein length (aa) 293

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3.4E-06 8 68

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|P87216|VIPI_SCHPO Protein vip1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vip1 PE=1 SV=1 7 221 6.0E-45
sp|Q9LFD5|BPA1_ARATH Binding partner of ACD11 1 OS=Arabidopsis thaliana GN=BPA1 PE=1 SV=1 6 171 3.0E-10

GO

GO Term Description Terminal node
GO:0003723 RNA binding Yes
GO:0003674 molecular_function No
GO:0005488 binding No
GO:1901363 heterocyclic compound binding No
GO:0097159 organic cyclic compound binding No
GO:0003676 nucleic acid binding No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 40 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >OphauB2|7007
MAAKSTVHVKNIAGSTSDSEVRDFFSFCGKISDFSVTTSGDTKSAEVTFEKPTAMKTALLLNNTQLGPNHISVTS
QGSSDAADEHQINTARDSDDITQEEKPRARILAEYLAHGYVVGDAAIERAIDLDSKHGVSNRFVNTLHQLDQKYH
ATDRARATDSNYGLTQRANSLLTGIGSYFERASNTPTGKKLVKFYTDSSRQVQDIHAEARRLADLKKSEYGGSAY
KAAGLEKVFGKENKDKSKTESEPYGAAAASSSSEKPAPATTSSIPAAATEPLPGLQDKSTEANKSTN*
Coding >OphauB2|7007
ATGGCAGCCAAATCGACAGTGCACGTCAAGAACATTGCTGGCTCGACCAGCGACTCGGAAGTCCGTGACTTTTTC
AGCTTTTGCGGCAAGATTTCCGACTTCAGTGTGACGACTAGCGGCGACACCAAGTCGGCCGAAGTGACGTTTGAA
AAGCCGACGGCCATGAAGACGGCGCTGCTGCTCAACAATACGCAGCTGGGCCCCAACCACATTAGCGTGACAAGC
CAGGGAAGCAGCGATGCCGCGGATGAGCATCAAATCAACACGGCTCGTGACTCGGATGACATCACACAGGAGGAG
AAGCCGCGTGCCCGCATTCTCGCCGAGTACCTGGCTCATGGCTACGTCGTTGGCGATGCTGCCATTGAGCGCGCC
ATTGACCTTGACTCCAAGCACGGCGTGTCAAACCGCTTCGTCAACACGCTGCATCAGCTCGACCAGAAGTACCAT
GCTACAGACCGCGCTCGCGCAACGGATTCAAACTACGGCCTGACGCAGCGTGCCAACTCGCTCCTCACAGGCATT
GGGTCTTATTTCGAGCGAGCCAGCAACACACCCACAGGCAAGAAGCTGGTCAAGTTTTACACGGATAGTTCTCGG
CAGGTGCAGGACATTCATGCCGAGGCTCGTCGCCTGGCTGATCTCAAGAAGAGTGAGTATGGGGGCAGTGCCTAC
AAGGCCGCTGGTCTCGAAAAGGTGTTTGGGAAAGAAAACAAGGACAAGAGTAAAACCGAGTCGGAGCCCTATGGT
GCGGCTGCAGCGTCGTCTTCGTCGGAAAAGCCAGCGCCAGCCACCACCAGCTCCATTCCGGCAGCGGCTACCGAA
CCCCTCCCCGGCCTTCAGGATAAGTCGACAGAGGCCAACAAGAGCACCAACTGA
Transcript >OphauB2|7007
ATGGCAGCCAAATCGACAGTGCACGTCAAGAACATTGCTGGCTCGACCAGCGACTCGGAAGTCCGTGACTTTTTC
AGCTTTTGCGGCAAGATTTCCGACTTCAGTGTGACGACTAGCGGCGACACCAAGTCGGCCGAAGTGACGTTTGAA
AAGCCGACGGCCATGAAGACGGCGCTGCTGCTCAACAATACGCAGCTGGGCCCCAACCACATTAGCGTGACAAGC
CAGGGAAGCAGCGATGCCGCGGATGAGCATCAAATCAACACGGCTCGTGACTCGGATGACATCACACAGGAGGAG
AAGCCGCGTGCCCGCATTCTCGCCGAGTACCTGGCTCATGGCTACGTCGTTGGCGATGCTGCCATTGAGCGCGCC
ATTGACCTTGACTCCAAGCACGGCGTGTCAAACCGCTTCGTCAACACGCTGCATCAGCTCGACCAGAAGTACCAT
GCTACAGACCGCGCTCGCGCAACGGATTCAAACTACGGCCTGACGCAGCGTGCCAACTCGCTCCTCACAGGCATT
GGGTCTTATTTCGAGCGAGCCAGCAACACACCCACAGGCAAGAAGCTGGTCAAGTTTTACACGGATAGTTCTCGG
CAGGTGCAGGACATTCATGCCGAGGCTCGTCGCCTGGCTGATCTCAAGAAGAGTGAGTATGGGGGCAGTGCCTAC
AAGGCCGCTGGTCTCGAAAAGGTGTTTGGGAAAGAAAACAAGGACAAGAGTAAAACCGAGTCGGAGCCCTATGGT
GCGGCTGCAGCGTCGTCTTCGTCGGAAAAGCCAGCGCCAGCCACCACCAGCTCCATTCCGGCAGCGGCTACCGAA
CCCCTCCCCGGCCTTCAGGATAAGTCGACAGAGGCCAACAAGAGCACCAACTGA
Gene >OphauB2|7007
ATGGCAGCCAAATCGACAGTGCACGTCAAGAACATTGCTGGCTCGACCAGCGACTCGGAAGTCCGTGACTTTTTC
AGCTTTTGGTGAGCATGCCGGCAAGACGACCATGTGCCAGATGTTAACGGCCCAACCAGCGGCAAGATTTCCGAC
TTCAGTGTGACGACTAGCGGCGACACCAAGTCGGCCGAAGTGACGTTTGAAAAGCCGACGGCCATGAAGACGGCG
CTGCTGCTCAACAATACGCAGCTGGGCCCCAACCACATTAGCGTGACAAGCCAGGGAAGCAGCGATGCCGCGGAT
GAGCATCAAATCAACACGGCTCGTGACTCGGATGACATCACACAGGAGGAGAAGCCGCGTGCCCGCATTCTCGCC
GAGTACCTGGCTCATGGCTACGTCGTTGGCGATGCTGCCATTGAGCGCGCCATTGACCTTGACTCCAAGCACGGC
GTGTCAAACCGCTTCGTCAACACGCTGCATCAGCTCGACCAGAAGTACCATGCTACAGACCGCGCTCGCGCAACG
GATTCAAACTACGGCCTGACGCAGCGTGCCAACTCGCTCCTCACAGGCATTGGGTCTTATTTCGAGCGAGCCAGC
AACACACCCACAGGCAAGAAGCTGGTCAAGTTTTACACGGATAGTTCTCGGCAGGTGCAGGACATTCATGCCGAG
GCTCGTCGCCTGGCTGATCTCAAGAAGAGTGAGTATGGGGGCAGTGCCTACAAGGCCGCTGGTCTCGAAAAGGTG
TTTGGGAAAGAAAACAAGGACAAGAGTAAAACCGAGTCGGAGCCCTATGGTGCGGCTGCAGCGTCGTCTTCGTCG
GAAAAGCCAGCGCCAGCCACCACCAGCTCCATTCCGGCAGCGGCTACCGAACCCCTCCCCGGCCTTCAGGATAAG
TCGACAGAGGCCAACAAGAGCACCAACTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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