© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauB2|6957 |
| Gene name | |
| Location | Contig_7:22951..23352 |
| Strand | + |
| Gene length (bp) | 401 |
| Transcript length (bp) | 279 |
| Coding sequence length (bp) | 279 |
| Protein length (aa) | 93 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF08285 | DPM3 | Dolichol-phosphate mannosyltransferase subunit 3 (DPM3) | 1.2E-37 | 1 | 90 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9XVV5|DPM3_CAEEL | Probable dolichol-phosphate mannosyltransferase subunit 3 OS=Caenorhabditis elegans GN=dpm-3 PE=3 SV=1 | 34 | 86 | 2.0E-07 |
| sp|Q3ZC71|DPM3_BOVIN | Dolichol-phosphate mannosyltransferase subunit 3 OS=Bos taurus GN=DPM3 PE=3 SV=1 | 1 | 86 | 5.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006486 | protein glycosylation | Yes |
| GO:0044238 | primary metabolic process | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0036211 | protein modification process | No |
| GO:0008152 | metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0043412 | macromolecule modification | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:1901564 | organonitrogen compound metabolic process | No |
| GO:0019538 | protein metabolic process | No |
| GO:0043413 | macromolecule glycosylation | No |
| GO:0070085 | glycosylation | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 7 | 26 | 19 |
| 2 | 36 | 58 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauB2|6957 MTRAQQTISIGLLVSSLYLALYFKLIPLPTLIQHEIVPVLPFWALVSFGALLLFRLGWGIMTFNDVPDAHQELMG QIETAKSDLRKLDVDVD* |
| Coding | >OphauB2|6957 ATGACGCGCGCCCAGCAGACCATTTCAATCGGTCTCCTTGTCTCCTCTCTCTATCTCGCCCTCTACTTCAAGCTC ATTCCCCTGCCCACCCTGATTCAACACGAAATTGTACCCGTGCTACCCTTCTGGGCCCTCGTCTCGTTTGGCGCT CTGCTCCTCTTCCGTCTGGGCTGGGGCATAATGACCTTCAACGATGTCCCGGATGCGCATCAAGAGCTCATGGGG CAAATCGAAACGGCAAAATCTGACTTGCGCAAGCTTGACGTCGATGTCGATTGA |
| Transcript | >OphauB2|6957 ATGACGCGCGCCCAGCAGACCATTTCAATCGGTCTCCTTGTCTCCTCTCTCTATCTCGCCCTCTACTTCAAGCTC ATTCCCCTGCCCACCCTGATTCAACACGAAATTGTACCCGTGCTACCCTTCTGGGCCCTCGTCTCGTTTGGCGCT CTGCTCCTCTTCCGTCTGGGCTGGGGCATAATGACCTTCAACGATGTCCCGGATGCGCATCAAGAGCTCATGGGG CAAATCGAAACGGCAAAATCTGACTTGCGCAAGCTTGACGTCGATGTCGATTGA |
| Gene | >OphauB2|6957 ATGACGCGCGCCCAGCAGACCATTTCAATCGGTCTCCTTGTCTCCTCTGTACGCACCACCTCCTTGCACAGACCT CCTTGCACAGCCTGGCCCTATTCTAACAGACAGAAAAGCTCTATCTCGCCCTCTACTTCAAGCTCATTCCCCTGC CCACCCTGATTCAACACGAAATTGTACCCGTGGTAAGCCTTGTCCAGCCTTGTTTCAAGCATCGGTGCTGAAATA GCCTCCCGTGACAGCTACCCTTCTGGGCCCTCGTCTCGTTTGGCGCTCTGCTCCTCTTCCGTCTGGGCTGGGGCA TAATGACCTTCAACGATGTCCCGGATGCGCATCAAGAGCTCATGGGGCAAATCGAAACGGCAAAATCTGACTTGC GCAAGCTTGACGTCGATGTCGATTGA |