© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauB2|6941 |
| Gene name | |
| Location | Contig_69:94018..95908 |
| Strand | + |
| Gene length (bp) | 1890 |
| Transcript length (bp) | 1692 |
| Coding sequence length (bp) | 1692 |
| Protein length (aa) | 564 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF07690 | MFS_1 | Major Facilitator Superfamily | 9.8E-46 | 33 | 397 |
| PF00083 | Sugar_tr | Sugar (and other) transporter | 2.5E-05 | 65 | 208 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O74852|YQ92_SCHPO | Uncharacterized MFS-type transporter C18.02 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC18.02 PE=3 SV=1 | 15 | 471 | 2.0E-63 |
| sp|Q59XM0|QDR3_CANAL | MFS antiporter QDR3 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=QDR3 PE=2 SV=1 | 27 | 279 | 1.0E-10 |
| sp|Q08C75|VACHA_DANRE | Probable vesicular acetylcholine transporter-A OS=Danio rerio GN=slc18a3a PE=2 SV=1 | 26 | 185 | 6.0E-10 |
| sp|P59845|VACHB_DANRE | Probable vesicular acetylcholine transporter-B OS=Danio rerio GN=slc18a3b PE=2 SV=1 | 43 | 185 | 2.0E-09 |
| sp|P02980|TCR2_ECOLX | Tetracycline resistance protein, class B OS=Escherichia coli GN=tetA PE=1 SV=1 | 21 | 228 | 3.0E-09 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O74852|YQ92_SCHPO | Uncharacterized MFS-type transporter C18.02 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC18.02 PE=3 SV=1 | 15 | 471 | 2.0E-63 |
| sp|Q59XM0|QDR3_CANAL | MFS antiporter QDR3 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=QDR3 PE=2 SV=1 | 27 | 279 | 1.0E-10 |
| sp|Q08C75|VACHA_DANRE | Probable vesicular acetylcholine transporter-A OS=Danio rerio GN=slc18a3a PE=2 SV=1 | 26 | 185 | 6.0E-10 |
| sp|P59845|VACHB_DANRE | Probable vesicular acetylcholine transporter-B OS=Danio rerio GN=slc18a3b PE=2 SV=1 | 43 | 185 | 2.0E-09 |
| sp|P02980|TCR2_ECOLX | Tetracycline resistance protein, class B OS=Escherichia coli GN=tetA PE=1 SV=1 | 21 | 228 | 3.0E-09 |
| sp|Q91498|VACHT_TORMA | Vesicular acetylcholine transporter OS=Torpedo marmorata PE=2 SV=2 | 22 | 186 | 5.0E-09 |
| sp|P9WG88|EMRB_MYCTO | Multidrug resistance protein B homolog OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) GN=emrB PE=3 SV=1 | 76 | 395 | 5.0E-09 |
| sp|Q91514|VACHT_TORTO | Vesicular acetylcholine transporter OS=Torpedo torpedo PE=2 SV=1 | 19 | 186 | 6.0E-09 |
| sp|P81721|VACHT_TORCA | Vesicular acetylcholine transporter OS=Torpedo californica PE=2 SV=2 | 22 | 186 | 6.0E-09 |
| sp|Q16572|VACHT_HUMAN | Vesicular acetylcholine transporter OS=Homo sapiens GN=SLC18A3 PE=2 SV=2 | 81 | 222 | 9.0E-09 |
| sp|Q62666|VACHT_RAT | Vesicular acetylcholine transporter OS=Rattus norvegicus GN=Slc18a3 PE=2 SV=2 | 81 | 222 | 1.0E-08 |
| sp|O35304|VACHT_MOUSE | Vesicular acetylcholine transporter OS=Mus musculus GN=Slc18a3 PE=2 SV=1 | 81 | 222 | 3.0E-08 |
| sp|P39637|YWFA_BACSU | Uncharacterized MFS-type transporter YwfA OS=Bacillus subtilis (strain 168) GN=ywfA PE=3 SV=1 | 7 | 472 | 3.0E-08 |
| sp|B4EYY4|MDTG_PROMH | Multidrug resistance protein MdtG OS=Proteus mirabilis (strain HI4320) GN=mdtG PE=3 SV=1 | 43 | 368 | 5.0E-08 |
| sp|P9WG89|EMRB_MYCTU | Multidrug resistance protein B homolog OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) GN=emrB PE=3 SV=1 | 76 | 229 | 3.0E-07 |
| sp|P32369|BAIG_CLOSV | Bile acid transporter OS=Clostridium scindens (strain JCM 10418 / VPI 12708) GN=baiG PE=3 SV=2 | 62 | 215 | 7.0E-07 |
| sp|P02982|TCR1_ECOLX | Tetracycline resistance protein, class A OS=Escherichia coli GN=tetA PE=3 SV=2 | 21 | 181 | 8.0E-07 |
| sp|P38125|DTR1_YEAST | Dityrosine transporter 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DTR1 PE=1 SV=1 | 45 | 199 | 8.0E-07 |
| sp|P94422|YCNB_BACSU | Uncharacterized MFS-type transporter YcnB OS=Bacillus subtilis (strain 168) GN=ycnB PE=3 SV=1 | 26 | 368 | 8.0E-07 |
| sp|P39843|BMR2_BACSU | Multidrug resistance protein 2 OS=Bacillus subtilis (strain 168) GN=blt PE=3 SV=1 | 36 | 174 | 9.0E-07 |
| sp|P94577|YWOG_BACSU | Uncharacterized MFS-type transporter YwoG OS=Bacillus subtilis (strain 168) GN=ywoG PE=3 SV=1 | 27 | 177 | 2.0E-06 |
| sp|Q83PL6|MDTL_SHIFL | Multidrug resistance protein MdtL OS=Shigella flexneri GN=mdtL PE=3 SV=1 | 62 | 212 | 6.0E-06 |
| sp|Q3YWK3|MDTL_SHISS | Multidrug resistance protein MdtL OS=Shigella sonnei (strain Ss046) GN=mdtL PE=3 SV=1 | 62 | 212 | 6.0E-06 |
| sp|Q31UW4|MDTL_SHIBS | Multidrug resistance protein MdtL OS=Shigella boydii serotype 4 (strain Sb227) GN=mdtL PE=3 SV=1 | 62 | 212 | 6.0E-06 |
| sp|B2TUR5|MDTL_SHIB3 | Multidrug resistance protein MdtL OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=mdtL PE=3 SV=1 | 62 | 212 | 6.0E-06 |
| sp|B1IX28|MDTL_ECOLC | Multidrug resistance protein MdtL OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=mdtL PE=3 SV=1 | 62 | 212 | 6.0E-06 |
| sp|A8A6H2|MDTL_ECOHS | Multidrug resistance protein MdtL OS=Escherichia coli O9:H4 (strain HS) GN=mdtL PE=3 SV=1 | 62 | 212 | 6.0E-06 |
| sp|Q0SYP9|MDTL_SHIF8 | Multidrug resistance protein MdtL OS=Shigella flexneri serotype 5b (strain 8401) GN=mdtL PE=3 SV=1 | 62 | 212 | 6.0E-06 |
| sp|B6I3U3|MDTL_ECOSE | Multidrug resistance protein MdtL OS=Escherichia coli (strain SE11) GN=mdtL PE=3 SV=1 | 62 | 212 | 6.0E-06 |
| sp|P31462|MDTL_ECOLI | Multidrug resistance protein MdtL OS=Escherichia coli (strain K12) GN=mdtL PE=1 SV=2 | 62 | 212 | 6.0E-06 |
| sp|B1X9T9|MDTL_ECODH | Multidrug resistance protein MdtL OS=Escherichia coli (strain K12 / DH10B) GN=mdtL PE=3 SV=1 | 62 | 212 | 6.0E-06 |
| sp|C4ZYY8|MDTL_ECOBW | Multidrug resistance protein MdtL OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=mdtL PE=3 SV=1 | 62 | 212 | 6.0E-06 |
| sp|B7L855|MDTL_ECO55 | Multidrug resistance protein MdtL OS=Escherichia coli (strain 55989 / EAEC) GN=mdtL PE=3 SV=1 | 62 | 212 | 6.0E-06 |
| sp|A6TG19|MDTL_KLEP7 | Multidrug resistance protein MdtL OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=mdtL PE=3 SV=1 | 25 | 210 | 8.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0055085 | transmembrane transport | Yes |
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0016021 | integral component of membrane | Yes |
| GO:0110165 | cellular anatomical entity | No |
| GO:0009987 | cellular process | No |
| GO:0003674 | molecular_function | No |
| GO:0051179 | localization | No |
| GO:0005215 | transporter activity | No |
| GO:0008150 | biological_process | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0051234 | establishment of localization | No |
| GO:0005575 | cellular_component | No |
| GO:0006810 | transport | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 28 | 50 | 22 |
| 2 | 65 | 87 | 22 |
| 3 | 99 | 118 | 19 |
| 4 | 128 | 147 | 19 |
| 5 | 160 | 182 | 22 |
| 6 | 186 | 208 | 22 |
| 7 | 311 | 333 | 22 |
| 8 | 348 | 367 | 19 |
| 9 | 374 | 396 | 22 |
| 10 | 433 | 455 | 22 |
| 11 | 462 | 484 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauB2|6941 MAPSLWSKLRRKDKLPVFLRLRSSTQLIVCTVTLAVFTDLFPYAVIVPVLPEALVQRCAQPDSKVQYWTSVSLAV YGAAVLITSPLWGYFADRFQNRRVPMIVGLVFLAGATIILAFMKNVTMLMIGRIFQGLSAALTWSVGLALVVDTV DPKRIGHAMGWIGASMSWATLIAPLLGGIVNAAGGWHSVWAMCYGLVGVDILLRLFIIEKKTLRKYQRQRNNDAE QGIYDDIVSGSSISEEPRQVSKDKSAAAGHELEINSRPPRKRAAGIKTIVTVLKNPRLLAAMWGCVVESAVQTAF DAVLPKEVQDLFGWNTVGQGLIFLPFVLPTLLGPLVGKVGDRYGPKWLTTFGFSFSTPFLICLRFVDSSGKQKII LLCALLACIGIGISCTLGPLMAEITWSVRSSRLKKQAESRADGEAPPESDDPEPIALAYAFYNVAFATGAMVGPL LGGFIRDSAGMPTVGWVLGLMTAFTAVTQMLWSGEPSNCRLKRFLYPRVCYYMGLLHGRGKEQTPEMMTQEQVGS KTGAAAATTTTTTTVSVENHGSEDVTEKRAAGADRTTS* |
| Coding | >OphauB2|6941 ATGGCACCATCACTGTGGTCAAAATTGAGACGAAAGGACAAGCTGCCCGTCTTTCTTCGACTGCGGTCGTCGACG CAGCTCATTGTCTGTACTGTCACTCTGGCCGTCTTTACGGACCTCTTTCCATATGCCGTCATTGTTCCTGTGCTG CCTGAAGCACTTGTTCAGCGTTGTGCTCAGCCAGATAGCAAAGTGCAATACTGGACGTCTGTTTCACTGGCAGTC TATGGAGCGGCAGTTCTCATCACGTCCCCTCTCTGGGGCTACTTTGCCGACCGATTCCAGAACCGGCGAGTGCCC ATGATCGTGGGCCTCGTCTTTCTCGCAGGCGCCACCATTATTCTTGCCTTTATGAAGAATGTTACCATGCTCATG ATTGGGCGCATCTTTCAAGGACTCTCGGCTGCTCTCACGTGGTCAGTCGGACTGGCGCTGGTTGTCGACACGGTG GATCCCAAGCGTATTGGCCATGCCATGGGATGGATTGGCGCGTCCATGAGTTGGGCGACGCTGATTGCACCGTTG CTGGGAGGCATTGTCAACGCGGCGGGCGGATGGCACTCGGTCTGGGCCATGTGCTACGGGCTGGTGGGCGTGGAC ATCTTGCTGCGGCTCTTCATCATTGAGAAGAAGACGCTGAGGAAGTATCAGCGTCAGCGCAACAACGATGCGGAA CAGGGCATATATGATGACATTGTCAGCGGCAGCAGCATCTCTGAGGAGCCGAGACAAGTGAGCAAGGACAAGTCA GCAGCTGCTGGCCATGAGTTGGAAATCAACAGCAGGCCGCCAAGAAAACGGGCGGCTGGCATCAAGACGATTGTG ACGGTGCTCAAGAACCCTCGCCTGCTGGCTGCCATGTGGGGCTGCGTCGTCGAGTCGGCGGTGCAGACGGCCTTT GACGCGGTGCTGCCCAAGGAGGTGCAAGACCTTTTTGGGTGGAACACGGTTGGCCAGGGCCTCATCTTCCTGCCC TTTGTGCTGCCGACGCTTCTTGGCCCCCTGGTGGGCAAGGTTGGCGACCGATACGGGCCCAAGTGGCTCACCACG TTTGGCTTTTCCTTTTCGACGCCCTTTCTCATCTGTCTGCGCTTTGTGGACAGCTCGGGCAAGCAGAAAATCATA CTTTTATGCGCCTTGCTGGCCTGTATTGGAATCGGCATCTCGTGCACTCTGGGGCCACTCATGGCTGAGATTACG TGGTCCGTGAGATCAAGCAGGCTCAAGAAGCAGGCCGAGTCGAGAGCTGATGGCGAGGCCCCGCCCGAGAGCGAC GACCCGGAGCCCATTGCGCTGGCATATGCCTTTTACAATGTCGCCTTTGCCACGGGGGCCATGGTTGGACCTCTG CTGGGCGGCTTCATCCGAGACTCTGCGGGCATGCCCACTGTGGGCTGGGTCCTGGGCCTCATGACAGCCTTTACC GCCGTTACGCAGATGCTGTGGAGCGGAGAGCCGTCGAATTGCAGGTTGAAGAGGTTTTTGTATCCCAGGGTCTGC TATTACATGGGGCTGCTCCATGGGCGCGGCAAGGAGCAGACGCCAGAGATGATGACGCAGGAGCAAGTCGGCAGC AAGACTGGCGCGGCGGCAGCAACAACAACAACAACAACAACAGTGTCGGTAGAGAATCATGGCAGCGAGGACGTG ACGGAGAAGAGGGCTGCTGGTGCCGACAGGACCACGTCGTAA |
| Transcript | >OphauB2|6941 ATGGCACCATCACTGTGGTCAAAATTGAGACGAAAGGACAAGCTGCCCGTCTTTCTTCGACTGCGGTCGTCGACG CAGCTCATTGTCTGTACTGTCACTCTGGCCGTCTTTACGGACCTCTTTCCATATGCCGTCATTGTTCCTGTGCTG CCTGAAGCACTTGTTCAGCGTTGTGCTCAGCCAGATAGCAAAGTGCAATACTGGACGTCTGTTTCACTGGCAGTC TATGGAGCGGCAGTTCTCATCACGTCCCCTCTCTGGGGCTACTTTGCCGACCGATTCCAGAACCGGCGAGTGCCC ATGATCGTGGGCCTCGTCTTTCTCGCAGGCGCCACCATTATTCTTGCCTTTATGAAGAATGTTACCATGCTCATG ATTGGGCGCATCTTTCAAGGACTCTCGGCTGCTCTCACGTGGTCAGTCGGACTGGCGCTGGTTGTCGACACGGTG GATCCCAAGCGTATTGGCCATGCCATGGGATGGATTGGCGCGTCCATGAGTTGGGCGACGCTGATTGCACCGTTG CTGGGAGGCATTGTCAACGCGGCGGGCGGATGGCACTCGGTCTGGGCCATGTGCTACGGGCTGGTGGGCGTGGAC ATCTTGCTGCGGCTCTTCATCATTGAGAAGAAGACGCTGAGGAAGTATCAGCGTCAGCGCAACAACGATGCGGAA CAGGGCATATATGATGACATTGTCAGCGGCAGCAGCATCTCTGAGGAGCCGAGACAAGTGAGCAAGGACAAGTCA GCAGCTGCTGGCCATGAGTTGGAAATCAACAGCAGGCCGCCAAGAAAACGGGCGGCTGGCATCAAGACGATTGTG ACGGTGCTCAAGAACCCTCGCCTGCTGGCTGCCATGTGGGGCTGCGTCGTCGAGTCGGCGGTGCAGACGGCCTTT GACGCGGTGCTGCCCAAGGAGGTGCAAGACCTTTTTGGGTGGAACACGGTTGGCCAGGGCCTCATCTTCCTGCCC TTTGTGCTGCCGACGCTTCTTGGCCCCCTGGTGGGCAAGGTTGGCGACCGATACGGGCCCAAGTGGCTCACCACG TTTGGCTTTTCCTTTTCGACGCCCTTTCTCATCTGTCTGCGCTTTGTGGACAGCTCGGGCAAGCAGAAAATCATA CTTTTATGCGCCTTGCTGGCCTGTATTGGAATCGGCATCTCGTGCACTCTGGGGCCACTCATGGCTGAGATTACG TGGTCCGTGAGATCAAGCAGGCTCAAGAAGCAGGCCGAGTCGAGAGCTGATGGCGAGGCCCCGCCCGAGAGCGAC GACCCGGAGCCCATTGCGCTGGCATATGCCTTTTACAATGTCGCCTTTGCCACGGGGGCCATGGTTGGACCTCTG CTGGGCGGCTTCATCCGAGACTCTGCGGGCATGCCCACTGTGGGCTGGGTCCTGGGCCTCATGACAGCCTTTACC GCCGTTACGCAGATGCTGTGGAGCGGAGAGCCGTCGAATTGCAGGTTGAAGAGGTTTTTGTATCCCAGGGTCTGC TATTACATGGGGCTGCTCCATGGGCGCGGCAAGGAGCAGACGCCAGAGATGATGACGCAGGAGCAAGTCGGCAGC AAGACTGGCGCGGCGGCAGCAACAACAACAACAACAACAACAGTGTCGGTAGAGAATCATGGCAGCGAGGACGTG ACGGAGAAGAGGGCTGCTGGTGCCGACAGGACCACGTCGTAA |
| Gene | >OphauB2|6941 ATGGCACCATCACTGTGGTCAAAATTGAGACGAAAGGACAAGCTGCCCGTCTTTCTTCGACTGCGGTCGTCGACG CAGCTCATTGTCTGTACTGTCACTCTGGCCGTCTTTACGGTAAGTGGCAAGCTTGTCTGGTGCCAGGTTGGCGTG TCTCTTCTTGTGGTTGACTTGGGCAACAGGACCTCTTTCCATATGCCGTCATTGTTCCTGTGCTGCCTGAAGCAC TTGTTCAGCGTTGTGCTCAGCCAGATAGCAAAGGTAAGAGGACAAGGACAAGGCAAAAATGCTGTCTTGACACAC CTGAGAGAGCAGTCGTCTAACGCGGTGAAAATATAGTGCAATACTGGACGTCTGTTTCACTGGCAGTCTATGGAG CGGCAGTTCTCATCACGTCCCGTAAGTGCCGACCTTGGTCAACTGTTGTGAGCTGTTGCTGACACGTCAAGCTTA GCTCTCTGGGGCTACTTTGCCGACCGATTCCAGAACCGGCGAGTGCCCATGATCGTGGGCCTCGTCTTTCTCGCA GGCGCCACCATTATTCTTGCCTTTATGAAGAATGTTACCATGCTCATGATTGGGCGCATCTTTCAAGGACTCTCG GCTGCTCTCACGTGGTCAGTCGGACTGGCGCTGGTTGTCGACACGGTGGATCCCAAGCGTATTGGCCATGCCATG GGATGGATTGGCGCGTCCATGAGTTGGGCGACGCTGATTGCACCGTTGCTGGGAGGCATTGTCAACGCGGCGGGC GGATGGCACTCGGTCTGGGCCATGTGCTACGGGCTGGTGGGCGTGGACATCTTGCTGCGGCTCTTCATCATTGAG AAGAAGACGCTGAGGAAGTATCAGCGTCAGCGCAACAACGATGCGGAACAGGGCATATATGATGACATTGTCAGC GGCAGCAGCATCTCTGAGGAGCCGAGACAAGTGAGCAAGGACAAGTCAGCAGCTGCTGGCCATGAGTTGGAAATC AACAGCAGGCCGCCAAGAAAACGGGCGGCTGGCATCAAGACGATTGTGACGGTGCTCAAGAACCCTCGCCTGCTG GCTGCCATGTGGGGCTGCGTCGTCGAGTCGGCGGTGCAGACGGCCTTTGACGCGGTGCTGCCCAAGGAGGTGCAA GACCTTTTTGGGTGGAACACGGTTGGCCAGGGCCTCATCTTCCTGCCCTTTGTGCTGCCGACGCTTCTTGGCCCC CTGGTGGGCAAGGTTGGCGACCGATACGGGCCCAAGTGGCTCACCACGTTTGGCTTTTCCTTTTCGACGCCCTTT CTCATCTGTCTGCGCTTTGTGGACAGCTCGGGCAAGCAGAAAATCATACTTTTATGCGCCTTGCTGGCCTGTATT GGAATCGGCATCTCGTGCACTCTGGGGCCACTCATGGCTGAGATTACGTGGTCCGTGAGATCAAGCAGGCTCAAG AAGCAGGCCGAGTCGAGAGCTGATGGCGAGGCCCCGCCCGAGAGCGACGACCCGGAGCCCATTGCGCTGGCATAT GCCTTTTACAATGTCGCCTTTGCCACGGGGGCCATGGTTGGACCTCTGCTGGGCGGCTTCATCCGAGACTCTGCG GGCATGCCCACTGTGGGCTGGGTCCTGGGCCTCATGACAGCCTTTACCGCCGTTACGCAGATGCTGTGGAGCGGA GAGCCGTCGAATTGCAGGTTGAAGAGGTTTTTGTATCCCAGGGTCTGCTATTACATGGGGCTGCTCCATGGGCGC GGCAAGGAGCAGACGCCAGAGATGATGACGCAGGAGCAAGTCGGCAGCAAGACTGGCGCGGCGGCAGCAACAACA ACAACAACAACAACAGTGTCGGTAGAGAATCATGGCAGCGAGGACGTGACGGAGAAGAGGGCTGCTGGTGCCGAC AGGACCACGTCGTAA |