© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauB2|689 |
| Gene name | |
| Location | Contig_112:40147..41380 |
| Strand | + |
| Gene length (bp) | 1233 |
| Transcript length (bp) | 1020 |
| Coding sequence length (bp) | 1020 |
| Protein length (aa) | 340 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01755 | Glyco_transf_25 | Glycosyltransferase family 25 (LPS biosynthesis protein) | 8.3E-07 | 76 | 178 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|A5PMF6|GT251_DANRE | Procollagen galactosyltransferase 1 OS=Danio rerio GN=colgalt1 PE=3 SV=1 | 62 | 180 | 3.0E-08 |
| sp|A7MB73|GT253_BOVIN | Probable inactive glycosyltransferase 25 family member 3 OS=Bos taurus GN=CERCAM PE=2 SV=1 | 70 | 180 | 1.0E-07 |
| sp|A0JPH3|G251A_XENLA | Procollagen galactosyltransferase 1-A OS=Xenopus laevis GN=colgalt1-a PE=2 SV=1 | 72 | 174 | 4.0E-07 |
| sp|Q5T4B2|GT253_HUMAN | Probable inactive glycosyltransferase 25 family member 3 OS=Homo sapiens GN=CERCAM PE=2 SV=1 | 70 | 180 | 1.0E-06 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 36 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 12 | 29 | 17 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauB2|689 MYHAHALLSKPLLRILAAIIIVCVIFLLSRERLLASDAVRPYMASIAKLPAISVAQPAPTGMPLDTIKNSTLGFE KLFVISLPSRPDRRDGMVLQASLSDITIDFIDGVQNSQIAEKAIPKAEDGTHVLNAALGAWRAHINAIQEIVRRN ITSAFIMEDDGDWDVQIKHQLQNVAKATRALIQPLAIDSKSYADPTFPRRPKDHPPVPDIMFETLPNTLPPQISP YGDDWDVLWVGHCGQSFPRDDNEFLPRGRVIQRNDSTVPKKEHLESPFIQPFTLKDDYPDHTRAIHHSQWGVCSS GYAVSQRGARRILLEIGLKEVIAPFDLLLPRPSGRGKRH* |
| Coding | >OphauB2|689 ATGTATCATGCACATGCACTCCTGTCCAAGCCGCTACTACGCATCTTGGCCGCCATCATCATTGTCTGCGTGATT TTCTTGTTAAGCAGAGAACGGCTCCTTGCATCTGATGCTGTTCGTCCGTACATGGCCTCGATAGCAAAGCTCCCT GCTATTTCCGTTGCACAGCCAGCTCCTACTGGAATGCCACTCGACACTATCAAGAATAGCACTCTTGGCTTCGAA AAGCTTTTTGTCATTAGTCTGCCATCAAGGCCAGACAGGCGAGATGGCATGGTTCTCCAAGCCAGCCTTTCTGAC ATTACTATTGACTTTATAGACGGAGTGCAAAACTCCCAAATAGCTGAAAAGGCTATCCCAAAAGCTGAAGATGGA ACCCACGTCCTAAACGCGGCACTGGGAGCCTGGAGAGCACATATAAACGCGATACAAGAAATTGTCCGGCGCAAT ATAACCTCGGCTTTTATCATGGAAGACGATGGCGACTGGGACGTCCAGATTAAGCATCAGCTTCAAAATGTTGCA AAAGCCACACGCGCACTCATACAGCCTCTTGCGATCGATTCCAAGTCATACGCCGACCCTACATTTCCTCGGCGA CCAAAAGATCACCCTCCTGTGCCAGATATCATGTTTGAGACACTTCCAAACACTCTGCCTCCTCAGATTTCGCCG TATGGTGACGACTGGGATGTTCTGTGGGTTGGTCACTGCGGGCAGAGCTTTCCACGAGACGACAACGAGTTTCTA CCAAGAGGTCGCGTGATTCAAAGAAATGATTCCACAGTCCCCAAAAAAGAGCATCTAGAGTCGCCCTTTATTCAA CCCTTCACACTCAAGGACGACTATCCCGATCATACTCGTGCCATCCATCACTCCCAATGGGGAGTCTGTTCTTCT GGGTATGCCGTTAGTCAGAGGGGAGCACGTCGAATCTTGCTAGAGATTGGCTTGAAAGAAGTCATTGCGCCCTTT GACCTGCTCCTGCCGCGGCCCAGTGGGAGAGGAAAGCGACATTGA |
| Transcript | >OphauB2|689 ATGTATCATGCACATGCACTCCTGTCCAAGCCGCTACTACGCATCTTGGCCGCCATCATCATTGTCTGCGTGATT TTCTTGTTAAGCAGAGAACGGCTCCTTGCATCTGATGCTGTTCGTCCGTACATGGCCTCGATAGCAAAGCTCCCT GCTATTTCCGTTGCACAGCCAGCTCCTACTGGAATGCCACTCGACACTATCAAGAATAGCACTCTTGGCTTCGAA AAGCTTTTTGTCATTAGTCTGCCATCAAGGCCAGACAGGCGAGATGGCATGGTTCTCCAAGCCAGCCTTTCTGAC ATTACTATTGACTTTATAGACGGAGTGCAAAACTCCCAAATAGCTGAAAAGGCTATCCCAAAAGCTGAAGATGGA ACCCACGTCCTAAACGCGGCACTGGGAGCCTGGAGAGCACATATAAACGCGATACAAGAAATTGTCCGGCGCAAT ATAACCTCGGCTTTTATCATGGAAGACGATGGCGACTGGGACGTCCAGATTAAGCATCAGCTTCAAAATGTTGCA AAAGCCACACGCGCACTCATACAGCCTCTTGCGATCGATTCCAAGTCATACGCCGACCCTACATTTCCTCGGCGA CCAAAAGATCACCCTCCTGTGCCAGATATCATGTTTGAGACACTTCCAAACACTCTGCCTCCTCAGATTTCGCCG TATGGTGACGACTGGGATGTTCTGTGGGTTGGTCACTGCGGGCAGAGCTTTCCACGAGACGACAACGAGTTTCTA CCAAGAGGTCGCGTGATTCAAAGAAATGATTCCACAGTCCCCAAAAAAGAGCATCTAGAGTCGCCCTTTATTCAA CCCTTCACACTCAAGGACGACTATCCCGATCATACTCGTGCCATCCATCACTCCCAATGGGGAGTCTGTTCTTCT GGGTATGCCGTTAGTCAGAGGGGAGCACGTCGAATCTTGCTAGAGATTGGCTTGAAAGAAGTCATTGCGCCCTTT GACCTGCTCCTGCCGCGGCCCAGTGGGAGAGGAAAGCGACATTGA |
| Gene | >OphauB2|689 ATGTATCATGCACATGCACTCCTGTCCAAGCCGCTACTACGCATCTTGGCCGCCATCATCATTGTCTGCGTGATT TTCTTGTTAAGCAGAGAACGGCTCCTTGCATCTGATGCTGTTCGTCCGTACATGGCCTCGATAGCAAAGCTCCCT GCTATTTCCGTTGCACAGCCAGCTCCTACTGGAATGCCACTCGACACTATCAAGAATAGCACTCTTGGCGTGAGT AGCAGCAATTCCCATGATCCCATATCGAATAGATCCTTAACACTTTTTGCCTCTTTCTCGGCCACAGTTCGAAAA GCTTTTTGTCATTAGTCTGCCATCAAGGCCAGACAGGCGAGATGGCATGGTTCTCCAAGCCAGCCTTTCTGACAT TACTATTGACTTTATAGACGGAGTGCAAAACTCCCAAATAGCTGAAAAGGCTATCCCAAAAGCTGAAGATGGAAC CCACGTCCTAAACGCGGCACTGGGAGCCTGGAGAGCACATATAAACGCGATACAAGAGTAAGCACAGCGGCGCCG TATACTGATTGTTGCGGCGGCTTATGAAATTCCATGTAGAATTGTCCGGCGCAATATAACCTCGGCTTTTATCAT GGAAGACGATGGCGACTGGGACGTCCAGATTAAGCATCAGCTTCAAAATGTTGCAAAAGCCACACGCGCACTCAT ACAGCCTCTTGCGATCGATTCCAAGTCATACGCCGACCCTACATTTCCTCGGCGACCAAAAGATCACCCTCCTGT GCCAGATATCATGTTTGAGACACTTCCAAACACTCTGCCTCCTCAGATTTCGCCGTATGGTGACGACTGGGATGT TCTGTGGGTTGGTCACTGCGGGCAGAGCTTTCCACGAGACGACAACGAGTTTCTACCAAGAGGTCGCGTGATTCA AAGAAATGATTCCACAGTCCCCAAAAAAGAGCATCTAGAGTCGCCCTTTATTCAACCCTTCACACTCAAGGACGA CTATCCCGATCATACTCGTGCCATCCATCACTCCCAATGGGGAGTCTGTTCTTCTGGGTATGCCGTTAGTCAGAG GGGAGCACGTCGAATCTTGCTAGAGATTGGCTTGAAAGAAGTCATTGCGCCCTTTGACCTGCTCCTGCGTATGTT TTGTGATGGAATCTGGGGACGAGGACAACCTACGTGCATCACCACGCAACCATCTTTAATAAATCATCACCGAAA GCGCGGCCCAGTGGGAGAGGAAAGCGACATTGA |