© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauB2|6872 |
| Gene name | |
| Location | Contig_67:89312..90789 |
| Strand | - |
| Gene length (bp) | 1477 |
| Transcript length (bp) | 1410 |
| Coding sequence length (bp) | 1410 |
| Protein length (aa) | 470 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF07571 | TAF6_C | TAF6 C-terminal HEAT repeat domain | 3.4E-26 | 290 | 382 |
| PF02969 | TAF | TATA box binding protein associated factor (TAF) | 4.3E-17 | 18 | 80 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O74462|TAF6_SCHPO | Transcription initiation factor TFIID subunit 6 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=taf6 PE=1 SV=1 | 17 | 397 | 3.0E-113 |
| sp|P53040|TAF6_YEAST | Transcription initiation factor TFIID subunit 6 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TAF6 PE=1 SV=1 | 17 | 447 | 6.0E-84 |
| sp|Q9MAU3|TAF6_ARATH | Transcription initiation factor TFIID subunit 6 OS=Arabidopsis thaliana GN=TAF6 PE=1 SV=1 | 21 | 391 | 2.0E-71 |
| sp|Q91857|TAF6_XENLA | Transcription initiation factor TFIID subunit 6 OS=Xenopus laevis GN=taf6 PE=2 SV=3 | 10 | 381 | 1.0E-53 |
| sp|P49848|TAF6_HUMAN | Transcription initiation factor TFIID subunit 6 OS=Homo sapiens GN=TAF6 PE=1 SV=1 | 20 | 382 | 5.0E-53 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O74462|TAF6_SCHPO | Transcription initiation factor TFIID subunit 6 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=taf6 PE=1 SV=1 | 17 | 397 | 3.0E-113 |
| sp|P53040|TAF6_YEAST | Transcription initiation factor TFIID subunit 6 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TAF6 PE=1 SV=1 | 17 | 447 | 6.0E-84 |
| sp|Q9MAU3|TAF6_ARATH | Transcription initiation factor TFIID subunit 6 OS=Arabidopsis thaliana GN=TAF6 PE=1 SV=1 | 21 | 391 | 2.0E-71 |
| sp|Q91857|TAF6_XENLA | Transcription initiation factor TFIID subunit 6 OS=Xenopus laevis GN=taf6 PE=2 SV=3 | 10 | 381 | 1.0E-53 |
| sp|P49848|TAF6_HUMAN | Transcription initiation factor TFIID subunit 6 OS=Homo sapiens GN=TAF6 PE=1 SV=1 | 20 | 382 | 5.0E-53 |
| sp|Q62311|TAF6_MOUSE | Transcription initiation factor TFIID subunit 6 OS=Mus musculus GN=Taf6 PE=1 SV=1 | 20 | 382 | 1.0E-52 |
| sp|Q63801|TAF6_RAT | Transcription initiation factor TFIID subunit 6 OS=Rattus norvegicus GN=Taf6 PE=1 SV=1 | 20 | 382 | 1.0E-52 |
| sp|F4HVA6|TAF6B_ARATH | Transcription initiation factor TFIID subunit 6b OS=Arabidopsis thaliana GN=TAF6B PE=1 SV=1 | 21 | 455 | 2.0E-51 |
| sp|P49847|TAF6_DROME | Transcription initiation factor TFIID subunit 6 OS=Drosophila melanogaster GN=Taf6 PE=1 SV=2 | 19 | 455 | 2.0E-46 |
| sp|Q8R2K4|TAF6L_MOUSE | TAF6-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 6L OS=Mus musculus GN=Taf6l PE=2 SV=1 | 21 | 376 | 1.0E-24 |
| sp|Q9Y6J9|TAF6L_HUMAN | TAF6-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 6L OS=Homo sapiens GN=TAF6L PE=1 SV=1 | 21 | 376 | 4.0E-24 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006367 | transcription initiation from RNA polymerase II promoter | Yes |
| GO:0006352 | DNA-templated transcription, initiation | Yes |
| GO:0044271 | cellular nitrogen compound biosynthetic process | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0006725 | cellular aromatic compound metabolic process | No |
| GO:0034654 | nucleobase-containing compound biosynthetic process | No |
| GO:0008150 | biological_process | No |
| GO:0009059 | macromolecule biosynthetic process | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:1901576 | organic substance biosynthetic process | No |
| GO:0018130 | heterocycle biosynthetic process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0019438 | aromatic compound biosynthetic process | No |
| GO:0006139 | nucleobase-containing compound metabolic process | No |
| GO:0090304 | nucleic acid metabolic process | No |
| GO:0044249 | cellular biosynthetic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0032774 | RNA biosynthetic process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:1901362 | organic cyclic compound biosynthetic process | No |
| GO:0009987 | cellular process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0009058 | biosynthetic process | No |
| GO:0046483 | heterocycle metabolic process | No |
| GO:0016070 | RNA metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 12 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauB2|6872 MTTTSIDPPATGKQRLLWNSENARDVAESVGINGLSDEAQKALTQDIEYRIGQVIAEGMRLMRAARRTELTVGDV TLALRVLDVEPLYGYDSTRPLRYGEASLGPGQPLFYLEDEEVDFEKIINAPLPRVSRDMMYTVHWLAIEGVQPSI PQNPTLHEARTQDMLPKGPGAHPSLAALAGNDTGVNKPSVKHVVSKELILYFDKIQAALLDENPDDEVVRLRHAA LGSVRDDPGLHQLVPYFVNFIMDRVTHHLDDIFTLHRMMELTTALIENHSLFLDPYASSLSSCTLTCLMARKLGS EDGPDALARQYELRQLSASLVGRIAYKYAASNTLLRPKLTRTCLKYLLDPTRPAAVLYGAISGLFEAGGPEAVRV LVLRNLKAFDAGILQPLREKAEGSMDYEMLVQGLVQAVTSLATSLQDADGDNAPATETELEALNGFIGPIIGQRV ASLANRGLIKVILDARYLD* |
| Coding | >OphauB2|6872 ATGACAACCACATCAATTGACCCCCCGGCGACCGGCAAGCAGCGCCTGCTCTGGAATTCGGAAAACGCCCGCGAC GTTGCCGAGTCGGTGGGCATAAACGGCCTCAGCGATGAGGCTCAGAAGGCCCTGACCCAGGACATTGAGTACCGC ATTGGCCAGGTCATTGCCGAGGGCATGCGTCTGATGCGCGCAGCGCGTCGCACCGAGCTGACTGTGGGAGATGTG ACGCTGGCCCTGCGAGTGCTAGACGTGGAGCCACTCTATGGCTACGACTCGACGCGCCCACTGCGCTATGGCGAG GCCAGTCTTGGCCCTGGCCAGCCGCTCTTTTACCTCGAGGACGAAGAGGTTGACTTTGAGAAAATCATCAACGCC CCGTTGCCCAGGGTATCCCGAGACATGATGTATACTGTCCACTGGCTGGCTATCGAAGGCGTCCAGCCATCTATC CCCCAAAATCCAACTCTTCATGAAGCGCGTACCCAAGACATGCTGCCCAAGGGTCCTGGCGCCCATCCCTCGCTC GCTGCTCTCGCTGGAAACGACACGGGCGTCAACAAGCCATCGGTGAAGCACGTCGTTAGCAAAGAGCTCATTTTA TACTTTGATAAGATCCAAGCGGCCTTGCTCGACGAGAACCCCGATGACGAAGTGGTGCGTCTGCGTCACGCGGCC CTTGGCTCTGTGCGCGACGACCCTGGCCTCCACCAGCTCGTGCCGTATTTTGTAAACTTCATCATGGACCGCGTA ACGCATCATCTGGACGACATCTTCACCTTGCATCGCATGATGGAGCTTACAACGGCACTCATTGAAAACCATTCC TTGTTTCTCGACCCCTATGCGAGCTCCCTCTCCTCTTGCACCCTGACTTGCCTCATGGCTCGCAAGCTCGGTTCT GAGGACGGTCCGGATGCGCTTGCCCGTCAGTACGAGCTGCGCCAACTATCCGCCTCTCTTGTCGGTCGCATTGCC TACAAGTACGCTGCCTCCAACACACTGCTGCGCCCTAAATTGACCCGCACTTGCCTCAAGTATCTGCTGGATCCT ACGCGTCCGGCGGCTGTACTCTATGGTGCCATTTCTGGCTTGTTTGAGGCTGGCGGACCCGAGGCTGTGCGCGTC TTGGTCCTACGTAACCTCAAGGCCTTTGACGCTGGCATCCTGCAGCCGCTGCGTGAAAAGGCTGAAGGAAGCATG GACTATGAGATGTTGGTGCAGGGACTTGTGCAAGCGGTTACGTCCTTGGCGACCTCTTTACAGGATGCTGACGGC GATAATGCGCCAGCTACGGAAACTGAGCTGGAAGCACTAAATGGTTTCATTGGTCCTATAATTGGGCAGCGCGTT GCGTCGCTTGCCAACCGAGGGCTCATTAAAGTCATTCTCGATGCTCGATACCTCGACTAG |
| Transcript | >OphauB2|6872 ATGACAACCACATCAATTGACCCCCCGGCGACCGGCAAGCAGCGCCTGCTCTGGAATTCGGAAAACGCCCGCGAC GTTGCCGAGTCGGTGGGCATAAACGGCCTCAGCGATGAGGCTCAGAAGGCCCTGACCCAGGACATTGAGTACCGC ATTGGCCAGGTCATTGCCGAGGGCATGCGTCTGATGCGCGCAGCGCGTCGCACCGAGCTGACTGTGGGAGATGTG ACGCTGGCCCTGCGAGTGCTAGACGTGGAGCCACTCTATGGCTACGACTCGACGCGCCCACTGCGCTATGGCGAG GCCAGTCTTGGCCCTGGCCAGCCGCTCTTTTACCTCGAGGACGAAGAGGTTGACTTTGAGAAAATCATCAACGCC CCGTTGCCCAGGGTATCCCGAGACATGATGTATACTGTCCACTGGCTGGCTATCGAAGGCGTCCAGCCATCTATC CCCCAAAATCCAACTCTTCATGAAGCGCGTACCCAAGACATGCTGCCCAAGGGTCCTGGCGCCCATCCCTCGCTC GCTGCTCTCGCTGGAAACGACACGGGCGTCAACAAGCCATCGGTGAAGCACGTCGTTAGCAAAGAGCTCATTTTA TACTTTGATAAGATCCAAGCGGCCTTGCTCGACGAGAACCCCGATGACGAAGTGGTGCGTCTGCGTCACGCGGCC CTTGGCTCTGTGCGCGACGACCCTGGCCTCCACCAGCTCGTGCCGTATTTTGTAAACTTCATCATGGACCGCGTA ACGCATCATCTGGACGACATCTTCACCTTGCATCGCATGATGGAGCTTACAACGGCACTCATTGAAAACCATTCC TTGTTTCTCGACCCCTATGCGAGCTCCCTCTCCTCTTGCACCCTGACTTGCCTCATGGCTCGCAAGCTCGGTTCT GAGGACGGTCCGGATGCGCTTGCCCGTCAGTACGAGCTGCGCCAACTATCCGCCTCTCTTGTCGGTCGCATTGCC TACAAGTACGCTGCCTCCAACACACTGCTGCGCCCTAAATTGACCCGCACTTGCCTCAAGTATCTGCTGGATCCT ACGCGTCCGGCGGCTGTACTCTATGGTGCCATTTCTGGCTTGTTTGAGGCTGGCGGACCCGAGGCTGTGCGCGTC TTGGTCCTACGTAACCTCAAGGCCTTTGACGCTGGCATCCTGCAGCCGCTGCGTGAAAAGGCTGAAGGAAGCATG GACTATGAGATGTTGGTGCAGGGACTTGTGCAAGCGGTTACGTCCTTGGCGACCTCTTTACAGGATGCTGACGGC GATAATGCGCCAGCTACGGAAACTGAGCTGGAAGCACTAAATGGTTTCATTGGTCCTATAATTGGGCAGCGCGTT GCGTCGCTTGCCAACCGAGGGCTCATTAAAGTCATTCTCGATGCTCGATACCTCGACTAG |
| Gene | >OphauB2|6872 ATGACAACCACATCAATTGACCCCCCGGCGACCGGCAAGCAGCGCCTGCTCTGGAATTCGGAAAACGCCCGCGAC GTTGCCGAGTCGGTGGGCATAAACGGCCTCAGCGATGAGGCTCAGAAGGCCCTGACCCAGGACATTGAGTACCGC ATTGGCCAGGTCATTGCCGAGGGCATGCGTCTGATGCGCGCAGCGCGTCGCACCGAGCTGACTGTGGGAGATGTG ACGCTGGCCCTGCGAGTGCTAGACGTGGAGCCACTCTATGGCTACGACTCGACGCGCCCACTGCGCTATGGCGAG GCCAGTCTTGGCCCTGGCCAGCCGCTCTTTTACCTCGAGGACGAAGAGGTTGACTTTGAGAAAATCATCAACGCC CCGTTGCCCAGGGTATCCCGAGACATGATGTATACTGGTTCGTCTCTGCTCACCCAAAAAAAAAACGTTTGCTAG AGTTGGTGTCGCTAATCCAAGGTGAATAGTCCACTGGCTGGCTATCGAAGGCGTCCAGCCATCTATCCCCCAAAA TCCAACTCTTCATGAAGCGCGTACCCAAGACATGCTGCCCAAGGGTCCTGGCGCCCATCCCTCGCTCGCTGCTCT CGCTGGAAACGACACGGGCGTCAACAAGCCATCGGTGAAGCACGTCGTTAGCAAAGAGCTCATTTTATACTTTGA TAAGATCCAAGCGGCCTTGCTCGACGAGAACCCCGATGACGAAGTGGTGCGTCTGCGTCACGCGGCCCTTGGCTC TGTGCGCGACGACCCTGGCCTCCACCAGCTCGTGCCGTATTTTGTAAACTTCATCATGGACCGCGTAACGCATCA TCTGGACGACATCTTCACCTTGCATCGCATGATGGAGCTTACAACGGCACTCATTGAAAACCATTCCTTGTTTCT CGACCCCTATGCGAGCTCCCTCTCCTCTTGCACCCTGACTTGCCTCATGGCTCGCAAGCTCGGTTCTGAGGACGG TCCGGATGCGCTTGCCCGTCAGTACGAGCTGCGCCAACTATCCGCCTCTCTTGTCGGTCGCATTGCCTACAAGTA CGCTGCCTCCAACACACTGCTGCGCCCTAAATTGACCCGCACTTGCCTCAAGTATCTGCTGGATCCTACGCGTCC GGCGGCTGTACTCTATGGTGCCATTTCTGGCTTGTTTGAGGCTGGCGGACCCGAGGCTGTGCGCGTCTTGGTCCT ACGTAACCTCAAGGCCTTTGACGCTGGCATCCTGCAGCCGCTGCGTGAAAAGGCTGAAGGAAGCATGGACTATGA GATGTTGGTGCAGGGACTTGTGCAAGCGGTTACGTCCTTGGCGACCTCTTTACAGGATGCTGACGGCGATAATGC GCCAGCTACGGAAACTGAGCTGGAAGCACTAAATGGTTTCATTGGTCCTATAATTGGGCAGCGCGTTGCGTCGCT TGCCAACCGAGGGCTCATTAAAGTCATTCTCGATGCTCGATACCTCGACTAG |