© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | OphauB2|683 |
| Gene name | |
| Location | Contig_112:30638..32168 |
| Strand | + |
| Gene length (bp) | 1530 |
| Transcript length (bp) | 1470 |
| Coding sequence length (bp) | 1470 |
| Protein length (aa) | 490 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04938 | SIP1 | Survival motor neuron (SMN) interacting protein 1 (SIP1) | 3.4E-30 | 64 | 326 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0000387 | spliceosomal snRNP assembly | Yes |
| GO:0071840 | cellular component organization or biogenesis | No |
| GO:0009987 | cellular process | No |
| GO:0008150 | biological_process | No |
| GO:0016043 | cellular component organization | No |
| GO:0071826 | ribonucleoprotein complex subunit organization | No |
| GO:0043933 | protein-containing complex organization | No |
| GO:0022618 | ribonucleoprotein complex assembly | No |
| GO:0065003 | protein-containing complex assembly | No |
| GO:0022607 | cellular component assembly | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 39 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauB2|683 MPAKRDYDDLESGETTEGSGPKRRKYSPRCRHQHQNSDIDATWGQKYVFSAQTDATSIPYGDESDFEDDADAMAY LRSVRTEAQAIPHMLTASTTIIGPQMPPELQADDVEDTPICENVVDDVRGYYQDGAYVARPTEPDDDHGSVDPDS TSHAHLEGHDHLEKSSSPQLLQAYFASILTRYHHLRRTLHTRPPQSAMKLVASSRSTPATLFKPNTKSVKTWYRI LRQSSPHPVQLALLHKSSVFYALQLLLGGRFLRRGYTLSERTSQWLWGLLARLPSPEEMGAEEVACVRDIGRRAV LLGRSLSELAEINAELYETTSEVDDTDSSTTQKDENHDDDDDDAIADRDTNPEDSTEPVIRSESPSLSSDPVVKK EHDLHDSSDEEEGEITADFAESESEAMELAASDSDVEGSMHSTTTDAQALRAAKEAFLARLAIDTTTNDMDEEEA AKFRLRLNLRATLDMVLTVTGEYYGQRDLLDFREPFLGL* |
| Coding | >OphauB2|683 ATGCCAGCAAAACGCGACTACGACGACTTGGAAAGCGGTGAGACTACAGAGGGGTCTGGGCCAAAGCGCCGCAAA TATTCCCCACGATGTCGCCATCAGCACCAAAACTCAGACATTGATGCTACTTGGGGCCAGAAATATGTTTTTTCC GCCCAGACAGACGCCACCTCGATCCCCTATGGCGATGAGTCCGACTTTGAGGATGACGCTGATGCCATGGCGTAT CTGCGCTCCGTTAGAACAGAGGCCCAGGCTATACCGCATATGCTCACTGCTTCAACGACAATCATTGGCCCACAG ATGCCGCCAGAGCTGCAGGCAGACGATGTAGAGGACACTCCTATATGCGAAAATGTCGTCGATGATGTTAGAGGA TACTACCAGGATGGCGCATACGTGGCCCGGCCCACCGAACCAGATGATGACCATGGCAGCGTTGATCCGGACTCA ACTAGCCATGCACATCTTGAGGGGCACGACCACCTCGAGAAAAGCTCTAGTCCCCAGCTACTGCAGGCCTATTTC GCATCCATCTTGACAAGATACCACCATCTTCGTCGCACCCTACACACGAGACCACCACAAAGCGCCATGAAACTC GTTGCATCGTCACGGTCGACTCCAGCGACACTCTTCAAGCCCAATACCAAGTCTGTCAAGACATGGTATCGAATA CTTCGTCAATCGAGTCCACACCCGGTGCAGCTCGCTCTGCTTCACAAATCGTCTGTTTTCTACGCCCTGCAACTT CTTCTAGGCGGCCGATTTTTGCGTCGCGGATATACCCTATCGGAACGCACCAGTCAGTGGCTTTGGGGCTTGCTT GCCCGCTTGCCGTCACCTGAGGAGATGGGTGCCGAGGAGGTAGCTTGTGTGCGAGACATTGGCCGCCGTGCCGTG CTGCTCGGCCGTTCACTATCTGAACTGGCTGAGATTAACGCGGAGCTTTATGAAACCACATCCGAAGTTGACGAT ACCGATTCGAGTACCACTCAAAAAGACGAAAACCATGATGATGATGATGATGATGCTATTGCGGACCGAGACACA AACCCTGAAGATTCCACAGAACCCGTTATCAGGTCGGAAAGTCCCAGTCTTTCCAGCGACCCAGTTGTCAAAAAA GAGCATGATTTACATGATAGCTCCGATGAAGAAGAGGGTGAAATCACGGCCGACTTTGCAGAGAGTGAGTCTGAA GCAATGGAGCTGGCAGCTTCCGATTCAGATGTTGAAGGCTCAATGCACAGTACAACCACTGACGCACAAGCTCTT CGCGCTGCCAAGGAGGCTTTTCTAGCGCGACTGGCTATTGATACTACTACAAACGACATGGATGAGGAAGAGGCT GCAAAGTTTCGTTTGCGTCTCAATCTGCGAGCAACTCTCGACATGGTTCTAACTGTGACGGGTGAGTACTATGGC CAGCGCGACCTACTCGACTTTCGTGAGCCATTTTTGGGCTTATGA |
| Transcript | >OphauB2|683 ATGCCAGCAAAACGCGACTACGACGACTTGGAAAGCGGTGAGACTACAGAGGGGTCTGGGCCAAAGCGCCGCAAA TATTCCCCACGATGTCGCCATCAGCACCAAAACTCAGACATTGATGCTACTTGGGGCCAGAAATATGTTTTTTCC GCCCAGACAGACGCCACCTCGATCCCCTATGGCGATGAGTCCGACTTTGAGGATGACGCTGATGCCATGGCGTAT CTGCGCTCCGTTAGAACAGAGGCCCAGGCTATACCGCATATGCTCACTGCTTCAACGACAATCATTGGCCCACAG ATGCCGCCAGAGCTGCAGGCAGACGATGTAGAGGACACTCCTATATGCGAAAATGTCGTCGATGATGTTAGAGGA TACTACCAGGATGGCGCATACGTGGCCCGGCCCACCGAACCAGATGATGACCATGGCAGCGTTGATCCGGACTCA ACTAGCCATGCACATCTTGAGGGGCACGACCACCTCGAGAAAAGCTCTAGTCCCCAGCTACTGCAGGCCTATTTC GCATCCATCTTGACAAGATACCACCATCTTCGTCGCACCCTACACACGAGACCACCACAAAGCGCCATGAAACTC GTTGCATCGTCACGGTCGACTCCAGCGACACTCTTCAAGCCCAATACCAAGTCTGTCAAGACATGGTATCGAATA CTTCGTCAATCGAGTCCACACCCGGTGCAGCTCGCTCTGCTTCACAAATCGTCTGTTTTCTACGCCCTGCAACTT CTTCTAGGCGGCCGATTTTTGCGTCGCGGATATACCCTATCGGAACGCACCAGTCAGTGGCTTTGGGGCTTGCTT GCCCGCTTGCCGTCACCTGAGGAGATGGGTGCCGAGGAGGTAGCTTGTGTGCGAGACATTGGCCGCCGTGCCGTG CTGCTCGGCCGTTCACTATCTGAACTGGCTGAGATTAACGCGGAGCTTTATGAAACCACATCCGAAGTTGACGAT ACCGATTCGAGTACCACTCAAAAAGACGAAAACCATGATGATGATGATGATGATGCTATTGCGGACCGAGACACA AACCCTGAAGATTCCACAGAACCCGTTATCAGGTCGGAAAGTCCCAGTCTTTCCAGCGACCCAGTTGTCAAAAAA GAGCATGATTTACATGATAGCTCCGATGAAGAAGAGGGTGAAATCACGGCCGACTTTGCAGAGAGTGAGTCTGAA GCAATGGAGCTGGCAGCTTCCGATTCAGATGTTGAAGGCTCAATGCACAGTACAACCACTGACGCACAAGCTCTT CGCGCTGCCAAGGAGGCTTTTCTAGCGCGACTGGCTATTGATACTACTACAAACGACATGGATGAGGAAGAGGCT GCAAAGTTTCGTTTGCGTCTCAATCTGCGAGCAACTCTCGACATGGTTCTAACTGTGACGGGTGAGTACTATGGC CAGCGCGACCTACTCGACTTTCGTGAGCCATTTTTGGGCTTATGA |
| Gene | >OphauB2|683 ATGCCAGCAAAACGCGACTACGACGACTTGGAAAGCGGTGAGACTACAGAGGGGTCTGGGCCAAAGCGCCGCAAA TATTCCCCACGATGTCGCCATCAGCACCAAAACTCAGACATTGATGCTACTTGGGGCCAGAAATATGTTTTTTCC GCCCAGACAGACGCCACCTCGATCCCCTATGGCGATGAGTCCGACTTTGAGGATGACGCTGATGCCATGGCGTAT CTGCGCTCCGTTAGGTGCGTTGGGTTTATGCGCTCGCCAAGGCACTGGATGTGACTGACAGAATTGACTTGCAGA ACAGAGGCCCAGGCTATACCGCATATGCTCACTGCTTCAACGACAATCATTGGCCCACAGATGCCGCCAGAGCTG CAGGCAGACGATGTAGAGGACACTCCTATATGCGAAAATGTCGTCGATGATGTTAGAGGATACTACCAGGATGGC GCATACGTGGCCCGGCCCACCGAACCAGATGATGACCATGGCAGCGTTGATCCGGACTCAACTAGCCATGCACAT CTTGAGGGGCACGACCACCTCGAGAAAAGCTCTAGTCCCCAGCTACTGCAGGCCTATTTCGCATCCATCTTGACA AGATACCACCATCTTCGTCGCACCCTACACACGAGACCACCACAAAGCGCCATGAAACTCGTTGCATCGTCACGG TCGACTCCAGCGACACTCTTCAAGCCCAATACCAAGTCTGTCAAGACATGGTATCGAATACTTCGTCAATCGAGT CCACACCCGGTGCAGCTCGCTCTGCTTCACAAATCGTCTGTTTTCTACGCCCTGCAACTTCTTCTAGGCGGCCGA TTTTTGCGTCGCGGATATACCCTATCGGAACGCACCAGTCAGTGGCTTTGGGGCTTGCTTGCCCGCTTGCCGTCA CCTGAGGAGATGGGTGCCGAGGAGGTAGCTTGTGTGCGAGACATTGGCCGCCGTGCCGTGCTGCTCGGCCGTTCA CTATCTGAACTGGCTGAGATTAACGCGGAGCTTTATGAAACCACATCCGAAGTTGACGATACCGATTCGAGTACC ACTCAAAAAGACGAAAACCATGATGATGATGATGATGATGCTATTGCGGACCGAGACACAAACCCTGAAGATTCC ACAGAACCCGTTATCAGGTCGGAAAGTCCCAGTCTTTCCAGCGACCCAGTTGTCAAAAAAGAGCATGATTTACAT GATAGCTCCGATGAAGAAGAGGGTGAAATCACGGCCGACTTTGCAGAGAGTGAGTCTGAAGCAATGGAGCTGGCA GCTTCCGATTCAGATGTTGAAGGCTCAATGCACAGTACAACCACTGACGCACAAGCTCTTCGCGCTGCCAAGGAG GCTTTTCTAGCGCGACTGGCTATTGATACTACTACAAACGACATGGATGAGGAAGAGGCTGCAAAGTTTCGTTTG CGTCTCAATCTGCGAGCAACTCTCGACATGGTTCTAACTGTGACGGGTGAGTACTATGGCCAGCGCGACCTACTC GACTTTCGTGAGCCATTTTTGGGCTTATGA |