© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauB2|6794 |
| Gene name | |
| Location | Contig_66:6342..7985 |
| Strand | - |
| Gene length (bp) | 1643 |
| Transcript length (bp) | 1566 |
| Coding sequence length (bp) | 1566 |
| Protein length (aa) | 522 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF09810 | Exo5 | Exonuclease V - a 5' deoxyribonuclease | 2.4E-132 | 132 | 497 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9Y7L4|EXO5_SCHPO | Probable exonuclease V, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=exo5 PE=3 SV=1 | 144 | 496 | 4.0E-24 |
| sp|A2VDX7|EXO5_BOVIN | Exonuclease V OS=Bos taurus GN=EXO5 PE=2 SV=2 | 131 | 509 | 3.0E-23 |
| sp|Q9H790|EXO5_HUMAN | Exonuclease V OS=Homo sapiens GN=EXO5 PE=1 SV=1 | 131 | 509 | 2.0E-22 |
| sp|Q9CXP9|EXO5_MOUSE | Exonuclease V OS=Mus musculus GN=Exo5 PE=2 SV=1 | 131 | 499 | 4.0E-21 |
| sp|F1Q514|EXO5_DANRE | Exonuclease V OS=Danio rerio GN=exo5 PE=3 SV=1 | 124 | 499 | 4.0E-16 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9Y7L4|EXO5_SCHPO | Probable exonuclease V, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=exo5 PE=3 SV=1 | 144 | 496 | 4.0E-24 |
| sp|A2VDX7|EXO5_BOVIN | Exonuclease V OS=Bos taurus GN=EXO5 PE=2 SV=2 | 131 | 509 | 3.0E-23 |
| sp|Q9H790|EXO5_HUMAN | Exonuclease V OS=Homo sapiens GN=EXO5 PE=1 SV=1 | 131 | 509 | 2.0E-22 |
| sp|Q9CXP9|EXO5_MOUSE | Exonuclease V OS=Mus musculus GN=Exo5 PE=2 SV=1 | 131 | 499 | 4.0E-21 |
| sp|F1Q514|EXO5_DANRE | Exonuclease V OS=Danio rerio GN=exo5 PE=3 SV=1 | 124 | 499 | 4.0E-16 |
| sp|Q9FKK6|EXO5_ARATH | Exonuclease V, chloroplastic OS=Arabidopsis thaliana GN=At5g60370 PE=2 SV=1 | 106 | 494 | 2.0E-15 |
| sp|Q6FJK6|EXO5_CANGA | Exonuclease V, mitochondrial OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=EXO5 PE=3 SV=1 | 144 | 517 | 4.0E-10 |
| sp|Q75A64|EXO5_ASHGO | Exonuclease V, mitochondrial OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=EXO5 PE=3 SV=1 | 144 | 333 | 1.0E-08 |
| sp|C5DIF1|EXO5_LACTC | Exonuclease V, mitochondrial OS=Lachancea thermotolerans (strain ATCC 56472 / CBS 6340 / NRRL Y-8284) GN=EXO5 PE=3 SV=1 | 135 | 332 | 1.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0045145 | single-stranded DNA 5'-3' exodeoxyribonuclease activity | Yes |
| GO:0003824 | catalytic activity | No |
| GO:0016796 | exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters | No |
| GO:0008297 | single-stranded DNA exodeoxyribonuclease activity | No |
| GO:0016788 | hydrolase activity, acting on ester bonds | No |
| GO:0008409 | 5'-3' exonuclease activity | No |
| GO:0003674 | molecular_function | No |
| GO:0004529 | exodeoxyribonuclease activity | No |
| GO:0016787 | hydrolase activity | No |
| GO:0140097 | catalytic activity, acting on DNA | No |
| GO:0004527 | exonuclease activity | No |
| GO:0016895 | exodeoxyribonuclease activity, producing 5'-phosphomonoesters | No |
| GO:0004536 | deoxyribonuclease activity | No |
| GO:0004518 | nuclease activity | No |
| GO:0140640 | catalytic activity, acting on a nucleic acid | No |
| GO:0035312 | 5'-3' exodeoxyribonuclease activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 63 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauB2|6794 MKEDAVESNSDSDYGYDFTAEEEQDLINIVNEVSQPAAATSPDTTTVIDSLPTHQDGHIEDLGHGTLDNLQDEIF AAADWRGLAANAHVCYPDLSRALSQIKEEESSTPSAETAAAVPAPCTDSVPDEQRTPLERFRQYPRKPLTVTDLI SGAWCELQYWYILTRLPGGRKTRTAAMRQGTKMHRKLEDEVHTEVRVKVTRREDNFALRLWNVIQGLRTLRETGL TRELEVWGVVNGNLVNGVIDGLSYENPNPEFEDDLANPASQEAMSKQSVLTDFFPPDKDKSEALEHQKRIYLTDV KTRRSKAAVSQALLRPAKIQLLLYHSFLSDMAAGKLDFFKVLRRYAMDPDRHFSDTFVAQLGQVHHEIFYDAPSS IQELERARSEPPQGTPASTVLGTDVVRYHTLRQMLPLLEHELHKTFPLREASLGHILRVLYLHNQDGRQLEVHDF PVSRQALQEYLKEHMEWWRGEREARGVQVEEAFKCGTCEFAAECVWRQSMDEEQVKKANQRIWAARRAGAA* |
| Coding | >OphauB2|6794 ATGAAGGAGGACGCCGTCGAGAGTAATAGCGACAGTGACTATGGATACGATTTCACGGCTGAAGAGGAACAAGAT CTGATCAACATTGTCAACGAGGTCAGCCAGCCAGCAGCCGCCACCAGCCCAGACACCACCACTGTCATTGACTCG CTGCCCACGCACCAGGATGGACACATCGAGGACCTTGGCCATGGCACTCTCGATAACCTCCAAGATGAGATTTTC GCTGCGGCAGATTGGCGTGGTCTTGCCGCCAATGCGCATGTATGCTACCCGGACCTGAGCCGCGCATTGTCCCAG ATCAAGGAAGAAGAGTCGTCGACGCCATCGGCTGAGACTGCCGCTGCAGTACCAGCACCATGCACAGACTCGGTC CCCGACGAGCAACGCACTCCGCTCGAGCGATTTCGCCAGTACCCACGGAAACCGCTGACGGTGACGGACCTGATA TCCGGGGCGTGGTGTGAGCTGCAGTATTGGTACATTCTCACGCGGCTGCCGGGTGGACGCAAGACTCGCACCGCG GCCATGCGCCAGGGTACAAAGATGCATCGCAAGCTTGAAGACGAGGTGCATACCGAGGTGCGCGTCAAGGTGACG CGGCGCGAGGACAACTTTGCGCTTCGCCTATGGAACGTGATACAGGGGCTGCGAACGCTGCGCGAGACGGGGCTG ACACGCGAGCTCGAGGTCTGGGGCGTTGTCAATGGCAACTTGGTCAATGGCGTGATTGATGGACTCAGCTACGAG AATCCGAATCCCGAGTTTGAAGACGACTTGGCCAATCCGGCGTCACAAGAGGCCATGAGCAAGCAGTCGGTGCTG ACGGATTTCTTCCCGCCAGACAAGGACAAGAGTGAGGCATTGGAACACCAAAAAAGGATTTACTTGACAGACGTC AAGACGCGGCGCAGCAAAGCGGCCGTGTCCCAGGCGCTGCTTCGCCCAGCCAAGATTCAGCTTTTGTTATACCAC AGCTTCCTATCCGACATGGCGGCCGGAAAGCTCGATTTCTTCAAGGTGCTACGCCGCTACGCCATGGATCCCGAT CGACACTTTTCCGACACCTTTGTCGCGCAACTCGGCCAAGTACACCACGAAATCTTTTACGATGCGCCATCGAGC ATCCAAGAGCTGGAAAGAGCGCGGAGCGAGCCGCCACAAGGCACGCCAGCATCGACTGTTCTAGGCACCGACGTG GTTCGCTACCACACGCTACGGCAAATGCTGCCACTGCTGGAACACGAGCTGCACAAGACGTTTCCGCTGCGTGAG GCATCGCTGGGACATATCCTACGGGTGCTGTACCTGCACAACCAAGATGGGCGACAGCTCGAGGTGCATGATTTC CCGGTATCGAGACAAGCGCTACAAGAGTATTTGAAGGAGCACATGGAGTGGTGGCGTGGAGAGAGGGAGGCGAGG GGTGTGCAGGTGGAAGAAGCCTTCAAGTGCGGCACGTGTGAGTTTGCCGCCGAGTGTGTGTGGAGGCAGAGTATG GATGAGGAGCAGGTGAAGAAGGCGAATCAAAGGATTTGGGCGGCGCGGCGGGCGGGGGCAGCGTGA |
| Transcript | >OphauB2|6794 ATGAAGGAGGACGCCGTCGAGAGTAATAGCGACAGTGACTATGGATACGATTTCACGGCTGAAGAGGAACAAGAT CTGATCAACATTGTCAACGAGGTCAGCCAGCCAGCAGCCGCCACCAGCCCAGACACCACCACTGTCATTGACTCG CTGCCCACGCACCAGGATGGACACATCGAGGACCTTGGCCATGGCACTCTCGATAACCTCCAAGATGAGATTTTC GCTGCGGCAGATTGGCGTGGTCTTGCCGCCAATGCGCATGTATGCTACCCGGACCTGAGCCGCGCATTGTCCCAG ATCAAGGAAGAAGAGTCGTCGACGCCATCGGCTGAGACTGCCGCTGCAGTACCAGCACCATGCACAGACTCGGTC CCCGACGAGCAACGCACTCCGCTCGAGCGATTTCGCCAGTACCCACGGAAACCGCTGACGGTGACGGACCTGATA TCCGGGGCGTGGTGTGAGCTGCAGTATTGGTACATTCTCACGCGGCTGCCGGGTGGACGCAAGACTCGCACCGCG GCCATGCGCCAGGGTACAAAGATGCATCGCAAGCTTGAAGACGAGGTGCATACCGAGGTGCGCGTCAAGGTGACG CGGCGCGAGGACAACTTTGCGCTTCGCCTATGGAACGTGATACAGGGGCTGCGAACGCTGCGCGAGACGGGGCTG ACACGCGAGCTCGAGGTCTGGGGCGTTGTCAATGGCAACTTGGTCAATGGCGTGATTGATGGACTCAGCTACGAG AATCCGAATCCCGAGTTTGAAGACGACTTGGCCAATCCGGCGTCACAAGAGGCCATGAGCAAGCAGTCGGTGCTG ACGGATTTCTTCCCGCCAGACAAGGACAAGAGTGAGGCATTGGAACACCAAAAAAGGATTTACTTGACAGACGTC AAGACGCGGCGCAGCAAAGCGGCCGTGTCCCAGGCGCTGCTTCGCCCAGCCAAGATTCAGCTTTTGTTATACCAC AGCTTCCTATCCGACATGGCGGCCGGAAAGCTCGATTTCTTCAAGGTGCTACGCCGCTACGCCATGGATCCCGAT CGACACTTTTCCGACACCTTTGTCGCGCAACTCGGCCAAGTACACCACGAAATCTTTTACGATGCGCCATCGAGC ATCCAAGAGCTGGAAAGAGCGCGGAGCGAGCCGCCACAAGGCACGCCAGCATCGACTGTTCTAGGCACCGACGTG GTTCGCTACCACACGCTACGGCAAATGCTGCCACTGCTGGAACACGAGCTGCACAAGACGTTTCCGCTGCGTGAG GCATCGCTGGGACATATCCTACGGGTGCTGTACCTGCACAACCAAGATGGGCGACAGCTCGAGGTGCATGATTTC CCGGTATCGAGACAAGCGCTACAAGAGTATTTGAAGGAGCACATGGAGTGGTGGCGTGGAGAGAGGGAGGCGAGG GGTGTGCAGGTGGAAGAAGCCTTCAAGTGCGGCACGTGTGAGTTTGCCGCCGAGTGTGTGTGGAGGCAGAGTATG GATGAGGAGCAGGTGAAGAAGGCGAATCAAAGGATTTGGGCGGCGCGGCGGGCGGGGGCAGCGTGA |
| Gene | >OphauB2|6794 ATGAAGGAGGACGCCGTCGAGAGTAATAGCGACAGTGACTATGGATACGATTTCACGGCTGAAGAGGAACAAGAT CTGATCAACATTGTCAACGAGGTCAGCCAGCCAGCAGCCGCCACCAGCCCAGACACCACCACTGTCATTGACTCG CTGCCCACGCACCAGGATGGACACATCGAGGACCTTGGCCATGGCACTCTCGATAACCTCCAAGATGAGATTTTC GCTGCGGCAGATTGGCGTGGTCTTGCCGCCAATGCGCATGTATGCTACCCGGACCGTATGTCTTGTTCCACGCAT CTCCTCTCCACTAAACTCGACTGCAACAGGGCCTGCTGACTGACTGACAGCGTTTAGTGAGCCGCGCATTGTCCC AGATCAAGGAAGAAGAGTCGTCGACGCCATCGGCTGAGACTGCCGCTGCAGTACCAGCACCATGCACAGACTCGG TCCCCGACGAGCAACGCACTCCGCTCGAGCGATTTCGCCAGTACCCACGGAAACCGCTGACGGTGACGGACCTGA TATCCGGGGCGTGGTGTGAGCTGCAGTATTGGTACATTCTCACGCGGCTGCCGGGTGGACGCAAGACTCGCACCG CGGCCATGCGCCAGGGTACAAAGATGCATCGCAAGCTTGAAGACGAGGTGCATACCGAGGTGCGCGTCAAGGTGA CGCGGCGCGAGGACAACTTTGCGCTTCGCCTATGGAACGTGATACAGGGGCTGCGAACGCTGCGCGAGACGGGGC TGACACGCGAGCTCGAGGTCTGGGGCGTTGTCAATGGCAACTTGGTCAATGGCGTGATTGATGGACTCAGCTACG AGAATCCGAATCCCGAGTTTGAAGACGACTTGGCCAATCCGGCGTCACAAGAGGCCATGAGCAAGCAGTCGGTGC TGACGGATTTCTTCCCGCCAGACAAGGACAAGAGTGAGGCATTGGAACACCAAAAAAGGATTTACTTGACAGACG TCAAGACGCGGCGCAGCAAAGCGGCCGTGTCCCAGGCGCTGCTTCGCCCAGCCAAGATTCAGCTTTTGTTATACC ACAGCTTCCTATCCGACATGGCGGCCGGAAAGCTCGATTTCTTCAAGGTGCTACGCCGCTACGCCATGGATCCCG ATCGACACTTTTCCGACACCTTTGTCGCGCAACTCGGCCAAGTACACCACGAAATCTTTTACGATGCGCCATCGA GCATCCAAGAGCTGGAAAGAGCGCGGAGCGAGCCGCCACAAGGCACGCCAGCATCGACTGTTCTAGGCACCGACG TGGTTCGCTACCACACGCTACGGCAAATGCTGCCACTGCTGGAACACGAGCTGCACAAGACGTTTCCGCTGCGTG AGGCATCGCTGGGACATATCCTACGGGTGCTGTACCTGCACAACCAAGATGGGCGACAGCTCGAGGTGCATGATT TCCCGGTATCGAGACAAGCGCTACAAGAGTATTTGAAGGAGCACATGGAGTGGTGGCGTGGAGAGAGGGAGGCGA GGGGTGTGCAGGTGGAAGAAGCCTTCAAGTGCGGCACGTGTGAGTTTGCCGCCGAGTGTGTGTGGAGGCAGAGTA TGGATGAGGAGCAGGTGAAGAAGGCGAATCAAAGGATTTGGGCGGCGCGGCGGGCGGGGGCAGCGTGA |