Fungal Genomics

at Utrecht University

General Properties

Protein IDOphauB2|6786
Gene name
LocationContig_65:82935..84124
Strand-
Gene length (bp)1189
Transcript length (bp)990
Coding sequence length (bp)990
Protein length (aa) 330

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF04193 PQ-loop PQ loop repeat 2.0E-14 15 73
PF04193 PQ-loop PQ loop repeat 4.0E-16 211 265

Swissprot hits

[Show all]
Swissprot ID Swissprot Description Start End E-value
sp|P38279|YPQ3_YEAST Probable vacuolar amino acid transporter YPQ3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RTC2 PE=1 SV=1 9 321 2.0E-53
sp|Q12010|YPQ1_YEAST Probable vacuolar amino acid transporter YPQ1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YPQ1 PE=1 SV=1 30 316 6.0E-44
sp|Q10482|STM1_SCHPO Seven transmembrane protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=stm1 PE=1 SV=1 7 316 4.0E-29
sp|Q95XZ6|LAAT1_CAEEL Lysosomal amino acid transporter 1 OS=Caenorhabditis elegans GN=laat-1 PE=1 SV=2 11 325 9.0E-26
sp|Q06328|YPQ2_YEAST Probable vacuolar amino acid transporter YPQ2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YPQ2 PE=1 SV=1 14 312 2.0E-21
[Show all]
[Show less]
Swissprot ID Swissprot Description Start End E-value
sp|P38279|YPQ3_YEAST Probable vacuolar amino acid transporter YPQ3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RTC2 PE=1 SV=1 9 321 2.0E-53
sp|Q12010|YPQ1_YEAST Probable vacuolar amino acid transporter YPQ1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YPQ1 PE=1 SV=1 30 316 6.0E-44
sp|Q10482|STM1_SCHPO Seven transmembrane protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=stm1 PE=1 SV=1 7 316 4.0E-29
sp|Q95XZ6|LAAT1_CAEEL Lysosomal amino acid transporter 1 OS=Caenorhabditis elegans GN=laat-1 PE=1 SV=2 11 325 9.0E-26
sp|Q06328|YPQ2_YEAST Probable vacuolar amino acid transporter YPQ2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YPQ2 PE=1 SV=1 14 312 2.0E-21
sp|Q6ZP29|LAAT1_HUMAN Lysosomal amino acid transporter 1 homolog OS=Homo sapiens GN=PQLC2 PE=1 SV=1 19 322 7.0E-20
sp|Q5ZJX0|LAAT1_CHICK Lysosomal amino acid transporter 1 homolog OS=Gallus gallus GN=PQLC2 PE=2 SV=1 207 328 4.0E-16
sp|B0BMY1|LAAT1_RAT Lysosomal amino acid transporter 1 homolog OS=Rattus norvegicus GN=Pqlc2 PE=1 SV=1 19 320 6.0E-14
sp|Q8C4N4|LAAT1_MOUSE Lysosomal amino acid transporter 1 homolog OS=Mus musculus GN=Pqlc2 PE=2 SV=1 19 316 2.0E-11
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GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 21 0.5

Transmembrane Domains

Domain # Start End Length
1 15 33 18
2 46 68 22
3 72 94 22
4 169 191 22
5 206 223 17
6 244 266 22
7 286 308 22

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >OphauB2|6786
MASPTPAPLLDVTAISGIFGSISIAFWVVVSTPQLIQQYRQGNANGLSIRFMTIWILGDVFNVLGAMLQGVLPTM
IILAIYYIFADGILWLQCFYYRGFRLRDEPPPAPILPHMPPGERTALLASSDAEERPIYEWPSLAPPVPDAHQDA
LAGPKIPSKGLQNALVKAGIVTLISLTGVLGWYISHLVASWSDDHEPADQGQGSPLQFNVLGQIFGYICTVFYTC
SRLPQLILNWRRKTTNGLSILFFMFTCLGNVNYALSILIYVPNCADAVCKPGEASQIYWRYILINLSWLSGCLLT
LALDLCILAQYYAYQKPSGEKEQGQIVAA*
Coding >OphauB2|6786
ATGGCATCCCCTACTCCAGCCCCTTTGCTCGATGTCACAGCCATTTCGGGCATCTTTGGATCTATTTCCATTGCC
TTTTGGGTCGTCGTTTCCACGCCCCAGTTGATCCAGCAGTATAGACAAGGAAACGCAAATGGTCTCTCCATTCGC
TTCATGACCATTTGGATCCTTGGCGATGTCTTCAATGTCTTGGGCGCCATGTTGCAGGGGGTTCTCCCCACAATG
ATCATCTTGGCTATTTACTACATCTTTGCAGACGGTATCCTCTGGTTGCAGTGCTTCTACTATCGTGGTTTCAGG
CTACGTGACGAACCGCCGCCCGCTCCTATATTGCCTCACATGCCTCCAGGAGAACGCACAGCCCTGCTCGCAAGC
AGCGACGCTGAGGAGCGCCCAATTTATGAATGGCCTAGTCTGGCTCCCCCAGTCCCAGATGCTCATCAAGATGCC
CTGGCTGGCCCAAAGATACCGTCAAAGGGACTGCAGAATGCCCTGGTCAAGGCCGGCATTGTTACCCTCATTTCC
TTGACTGGTGTCTTGGGCTGGTACATATCCCATCTAGTGGCTAGCTGGAGCGATGATCATGAGCCAGCCGACCAA
GGCCAGGGAAGCCCACTCCAGTTCAACGTGCTGGGTCAAATCTTTGGTTACATTTGCACTGTCTTTTATACCTGC
TCACGTCTGCCGCAGCTCATCCTCAACTGGCGCCGCAAGACGACAAACGGCCTGAGCATTCTCTTCTTCATGTTT
ACCTGCCTTGGAAACGTCAACTATGCCCTGTCCATTCTCATATACGTCCCCAATTGCGCTGATGCCGTTTGCAAG
CCAGGCGAGGCCAGCCAGATATACTGGCGCTACATCTTGATTAATCTGAGCTGGCTGTCAGGGTGCTTACTGACC
TTGGCCTTGGATCTCTGCATCCTTGCGCAATACTACGCATATCAGAAACCTAGTGGTGAGAAGGAACAGGGCCAA
ATAGTTGCCGCCTAG
Transcript >OphauB2|6786
ATGGCATCCCCTACTCCAGCCCCTTTGCTCGATGTCACAGCCATTTCGGGCATCTTTGGATCTATTTCCATTGCC
TTTTGGGTCGTCGTTTCCACGCCCCAGTTGATCCAGCAGTATAGACAAGGAAACGCAAATGGTCTCTCCATTCGC
TTCATGACCATTTGGATCCTTGGCGATGTCTTCAATGTCTTGGGCGCCATGTTGCAGGGGGTTCTCCCCACAATG
ATCATCTTGGCTATTTACTACATCTTTGCAGACGGTATCCTCTGGTTGCAGTGCTTCTACTATCGTGGTTTCAGG
CTACGTGACGAACCGCCGCCCGCTCCTATATTGCCTCACATGCCTCCAGGAGAACGCACAGCCCTGCTCGCAAGC
AGCGACGCTGAGGAGCGCCCAATTTATGAATGGCCTAGTCTGGCTCCCCCAGTCCCAGATGCTCATCAAGATGCC
CTGGCTGGCCCAAAGATACCGTCAAAGGGACTGCAGAATGCCCTGGTCAAGGCCGGCATTGTTACCCTCATTTCC
TTGACTGGTGTCTTGGGCTGGTACATATCCCATCTAGTGGCTAGCTGGAGCGATGATCATGAGCCAGCCGACCAA
GGCCAGGGAAGCCCACTCCAGTTCAACGTGCTGGGTCAAATCTTTGGTTACATTTGCACTGTCTTTTATACCTGC
TCACGTCTGCCGCAGCTCATCCTCAACTGGCGCCGCAAGACGACAAACGGCCTGAGCATTCTCTTCTTCATGTTT
ACCTGCCTTGGAAACGTCAACTATGCCCTGTCCATTCTCATATACGTCCCCAATTGCGCTGATGCCGTTTGCAAG
CCAGGCGAGGCCAGCCAGATATACTGGCGCTACATCTTGATTAATCTGAGCTGGCTGTCAGGGTGCTTACTGACC
TTGGCCTTGGATCTCTGCATCCTTGCGCAATACTACGCATATCAGAAACCTAGTGGTGAGAAGGAACAGGGCCAA
ATAGTTGCCGCCTAG
Gene >OphauB2|6786
ATGGCATCCCCTACTCCAGCCCCTTTGCTCGATGTCACAGCCATTTCGGGCATCTTTGGGTCAGCTTTCCTGCCC
CATTTCCTAGCCGCTCATTATTCAGTTCTGACGACGCCTTCCTCTCCAGATCTATTTCCATTGCCTTTTGGGGTC
AGTGCGACTTCCCTGCCGCACGCTCGACCATCTTGATTGCGAGCCCCCCGTGCGCCAACTGACGCCCAGGTAGTC
GTCGTTTCCACGCCCCAGTTGATCCAGCAGTATAGACAAGGAAACGCAAATGGTCTCTCCATTCGCTTCATGACC
ATTTGGATCCTTGGCGATGTCTTCAATGTCTTGGGCGCCATGTTGCAGGGGGTTCTCCCCACAATGGTATGCCCG
CCAGAGTCTTGACTCATACTCCCTCCTTGTCTGACGCTTGCACCCAAAGATCATCTTGGCTATTTACTACATCTT
TGCAGACGGTATCCTCTGGTTGCAGTGCTTCTACTATCGTGGTTTCAGGCTACGTGACGAACCGCCGCCCGCTCC
TATATTGCCTCACATGCCTCCAGGAGAACGCACAGCCCTGCTCGCAAGCAGCGACGCTGAGGAGCGCCCAATTTA
TGAATGGCCTAGTCTGGCTCCCCCAGTCCCAGATGCTCATCAAGATGCCCTGGCTGGCCCAAAGATACCGTCAAA
GGGACTGCAGAATGCCCTGGTCAAGGCCGGCATTGTTACCCTCATTTCCTTGACTGGTGTCTTGGGCTGGTACAT
ATCCCATCTAGTGGCTAGCTGGAGCGATGATCATGAGCCAGCCGACCAAGGCCAGGGAAGCCCACTCCAGTTCAA
CGTGCTGGGTCAAATCTTTGGTTACATTTGCACTGTCTTTTATACCTGCTCACGTCTGCCGCAGCTCATCCTCAA
CTGGCGCCGCAAGACGACAAACGGCCTGAGCATTCTCTTCTTCATGTTTACCTGCCTTGGAAACGTCAACTATGC
CCTGTCCATTCTCATATACGTCCCCAATTGCGCTGATGCCGTTTGCAAGCCAGGCGAGGCCAGCCAGATATACTG
GCGCTACATCTTGATTAATCTGAGCTGGCTGTCAGGGTGCTTACTGACCTTGGCCTTGGATCTCTGCATCCTTGC
GCAATACTACGCATATCAGAAACCTAGTGGTGAGAAGGAACAGGGCCAAATAGTTGCCGCCTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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