© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauB2|6658 |
| Gene name | |
| Location | Contig_62:90187..90820 |
| Strand | - |
| Gene length (bp) | 633 |
| Transcript length (bp) | 633 |
| Coding sequence length (bp) | 633 |
| Protein length (aa) | 211 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03371 | PRP38 | PRP38 family | 7.4E-59 | 27 | 191 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q5RDD2|PR38A_PONAB | Pre-mRNA-splicing factor 38A OS=Pongo abelii GN=PRPF38A PE=2 SV=1 | 27 | 201 | 2.0E-46 |
| sp|Q8HXH6|PR38A_MACFA | Pre-mRNA-splicing factor 38A OS=Macaca fascicularis GN=PRPF38A PE=2 SV=1 | 27 | 201 | 2.0E-46 |
| sp|Q8NAV1|PR38A_HUMAN | Pre-mRNA-splicing factor 38A OS=Homo sapiens GN=PRPF38A PE=1 SV=1 | 27 | 201 | 2.0E-46 |
| sp|Q0P5I6|PR38A_BOVIN | Pre-mRNA-splicing factor 38A OS=Bos taurus GN=PRPF38A PE=2 SV=1 | 27 | 201 | 2.0E-46 |
| sp|Q6DHU4|PR38A_DANRE | Pre-mRNA-splicing factor 38A OS=Danio rerio GN=prpf38a PE=2 SV=1 | 27 | 201 | 5.0E-46 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q5RDD2|PR38A_PONAB | Pre-mRNA-splicing factor 38A OS=Pongo abelii GN=PRPF38A PE=2 SV=1 | 27 | 201 | 2.0E-46 |
| sp|Q8HXH6|PR38A_MACFA | Pre-mRNA-splicing factor 38A OS=Macaca fascicularis GN=PRPF38A PE=2 SV=1 | 27 | 201 | 2.0E-46 |
| sp|Q8NAV1|PR38A_HUMAN | Pre-mRNA-splicing factor 38A OS=Homo sapiens GN=PRPF38A PE=1 SV=1 | 27 | 201 | 2.0E-46 |
| sp|Q0P5I6|PR38A_BOVIN | Pre-mRNA-splicing factor 38A OS=Bos taurus GN=PRPF38A PE=2 SV=1 | 27 | 201 | 2.0E-46 |
| sp|Q6DHU4|PR38A_DANRE | Pre-mRNA-splicing factor 38A OS=Danio rerio GN=prpf38a PE=2 SV=1 | 27 | 201 | 5.0E-46 |
| sp|Q4FZQ6|PR38A_XENLA | Pre-mRNA-splicing factor 38A OS=Xenopus laevis GN=prpf38a PE=2 SV=1 | 27 | 201 | 7.0E-46 |
| sp|Q28H87|PR38A_XENTR | Pre-mRNA-splicing factor 38A OS=Xenopus tropicalis GN=prpf38a PE=2 SV=1 | 27 | 201 | 3.0E-44 |
| sp|Q4FK66|PR38A_MOUSE | Pre-mRNA-splicing factor 38A OS=Mus musculus GN=Prpf38a PE=1 SV=1 | 27 | 201 | 4.0E-44 |
| sp|Q8LB54|PRP38_ARATH | Pre-mRNA-splicing factor 38 OS=Arabidopsis thaliana GN=PRP38 PE=1 SV=1 | 24 | 201 | 5.0E-42 |
| sp|Q9UUD2|PRP38_SCHPO | Pre-mRNA-splicing factor 38 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=prp38 PE=3 SV=1 | 14 | 179 | 5.0E-41 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 43 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauB2|6658 MSKPDVIYADARRFLDERGSSADLAPNGLNPATIMEKAVRDRIVESYFYKEQCFALNEADIIDRVVDHVSFIGGT HGAAQKPSPFLCLAFKLLQLAPSDAILQQYLEYGGQHYKYLRALACFYIRLTRPAVDVYRTLEPYLADRRKLRRR RRDNKAELAFVDEFVDDLLNKERVCATSLWKMPKREALEDAEVLEPRVSPLGDLDEQLSD* |
| Coding | >OphauB2|6658 ATGTCCAAGCCAGATGTCATCTACGCCGATGCCCGCCGCTTCCTCGACGAGCGCGGCTCCTCGGCCGACCTGGCC CCCAATGGCCTCAACCCCGCCACCATAATGGAAAAAGCCGTGCGCGACCGCATCGTCGAATCCTACTTTTACAAG GAACAATGCTTTGCCCTCAACGAAGCCGACATTATCGACCGCGTCGTTGACCACGTCTCCTTTATCGGCGGCACC CACGGCGCCGCCCAGAAACCCAGCCCTTTTCTCTGCCTCGCCTTTAAACTCCTCCAACTCGCTCCCTCGGACGCC ATTCTCCAACAGTACCTCGAATACGGCGGCCAGCACTACAAGTACCTCCGCGCCCTCGCCTGCTTCTACATTCGC CTCACCCGGCCCGCCGTGGACGTTTACCGTACCCTGGAGCCCTACTTGGCGGATCGGAGGAAGCTGCGCAGGCGC CGCAGGGATAACAAGGCGGAGCTGGCGTTTGTGGATGAGTTTGTGGATGATTTGCTAAACAAGGAGCGCGTGTGT GCCACGAGTTTGTGGAAGATGCCCAAGCGTGAGGCGCTCGAGGATGCAGAGGTGTTGGAGCCGCGCGTCAGTCCG CTGGGAGATCTCGATGAACAGTTGTCTGATTAA |
| Transcript | >OphauB2|6658 ATGTCCAAGCCAGATGTCATCTACGCCGATGCCCGCCGCTTCCTCGACGAGCGCGGCTCCTCGGCCGACCTGGCC CCCAATGGCCTCAACCCCGCCACCATAATGGAAAAAGCCGTGCGCGACCGCATCGTCGAATCCTACTTTTACAAG GAACAATGCTTTGCCCTCAACGAAGCCGACATTATCGACCGCGTCGTTGACCACGTCTCCTTTATCGGCGGCACC CACGGCGCCGCCCAGAAACCCAGCCCTTTTCTCTGCCTCGCCTTTAAACTCCTCCAACTCGCTCCCTCGGACGCC ATTCTCCAACAGTACCTCGAATACGGCGGCCAGCACTACAAGTACCTCCGCGCCCTCGCCTGCTTCTACATTCGC CTCACCCGGCCCGCCGTGGACGTTTACCGTACCCTGGAGCCCTACTTGGCGGATCGGAGGAAGCTGCGCAGGCGC CGCAGGGATAACAAGGCGGAGCTGGCGTTTGTGGATGAGTTTGTGGATGATTTGCTAAACAAGGAGCGCGTGTGT GCCACGAGTTTGTGGAAGATGCCCAAGCGTGAGGCGCTCGAGGATGCAGAGGTGTTGGAGCCGCGCGTCAGTCCG CTGGGAGATCTCGATGAACAGTTGTCTGATTAA |
| Gene | >OphauB2|6658 ATGTCCAAGCCAGATGTCATCTACGCCGATGCCCGCCGCTTCCTCGACGAGCGCGGCTCCTCGGCCGACCTGGCC CCCAATGGCCTCAACCCCGCCACCATAATGGAAAAAGCCGTGCGCGACCGCATCGTCGAATCCTACTTTTACAAG GAACAATGCTTTGCCCTCAACGAAGCCGACATTATCGACCGCGTCGTTGACCACGTCTCCTTTATCGGCGGCACC CACGGCGCCGCCCAGAAACCCAGCCCTTTTCTCTGCCTCGCCTTTAAACTCCTCCAACTCGCTCCCTCGGACGCC ATTCTCCAACAGTACCTCGAATACGGCGGCCAGCACTACAAGTACCTCCGCGCCCTCGCCTGCTTCTACATTCGC CTCACCCGGCCCGCCGTGGACGTTTACCGTACCCTGGAGCCCTACTTGGCGGATCGGAGGAAGCTGCGCAGGCGC CGCAGGGATAACAAGGCGGAGCTGGCGTTTGTGGATGAGTTTGTGGATGATTTGCTAAACAAGGAGCGCGTGTGT GCCACGAGTTTGTGGAAGATGCCCAAGCGTGAGGCGCTCGAGGATGCAGAGGTGTTGGAGCCGCGCGTCAGTCCG CTGGGAGATCTCGATGAACAGTTGTCTGATTAA |