© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | OphauB2|6596 |
| Gene name | |
| Location | Contig_61:32038..33302 |
| Strand | - |
| Gene length (bp) | 1264 |
| Transcript length (bp) | 1077 |
| Coding sequence length (bp) | 1077 |
| Protein length (aa) | 359 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF07986 | TBCC | Tubulin binding cofactor C | 6.5E-26 | 197 | 310 |
| PF16752 | TBCC_N | Tubulin-specific chaperone C N-terminal domain | 6.4E-10 | 3 | 89 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9SMR2|TBCC_ARATH | Tubulin-folding cofactor C OS=Arabidopsis thaliana GN=TFCC PE=1 SV=1 | 197 | 330 | 2.0E-20 |
| sp|Q15814|TBCC_HUMAN | Tubulin-specific chaperone C OS=Homo sapiens GN=TBCC PE=1 SV=2 | 2 | 329 | 2.0E-16 |
| sp|Q3SZE9|TBCC_BOVIN | Tubulin-specific chaperone C OS=Bos taurus GN=TBCC PE=2 SV=1 | 33 | 329 | 2.0E-16 |
| sp|Q5R5J7|TBCC_PONAB | Tubulin-specific chaperone C OS=Pongo abelii GN=TBCC PE=2 SV=1 | 2 | 329 | 1.0E-15 |
| sp|Q8VCN9|TBCC_MOUSE | Tubulin-specific chaperone C OS=Mus musculus GN=Tbcc PE=1 SV=1 | 22 | 329 | 2.0E-15 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9SMR2|TBCC_ARATH | Tubulin-folding cofactor C OS=Arabidopsis thaliana GN=TFCC PE=1 SV=1 | 197 | 330 | 2.0E-20 |
| sp|Q15814|TBCC_HUMAN | Tubulin-specific chaperone C OS=Homo sapiens GN=TBCC PE=1 SV=2 | 2 | 329 | 2.0E-16 |
| sp|Q3SZE9|TBCC_BOVIN | Tubulin-specific chaperone C OS=Bos taurus GN=TBCC PE=2 SV=1 | 33 | 329 | 2.0E-16 |
| sp|Q5R5J7|TBCC_PONAB | Tubulin-specific chaperone C OS=Pongo abelii GN=TBCC PE=2 SV=1 | 2 | 329 | 1.0E-15 |
| sp|Q8VCN9|TBCC_MOUSE | Tubulin-specific chaperone C OS=Mus musculus GN=Tbcc PE=1 SV=1 | 22 | 329 | 2.0E-15 |
| sp|Q9EPK2|XRP2_MOUSE | Protein XRP2 OS=Mus musculus GN=Rp2 PE=1 SV=3 | 219 | 347 | 2.0E-08 |
| sp|Q8AVX5|XRP2_XENLA | Protein XRP2 OS=Xenopus laevis GN=rp2 PE=2 SV=3 | 219 | 325 | 2.0E-08 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0015631 | tubulin binding | Yes |
| GO:0005515 | protein binding | No |
| GO:0008092 | cytoskeletal protein binding | No |
| GO:0003674 | molecular_function | No |
| GO:0005488 | binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 57 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauB2|6596 MDSSQSFYRSFQDKVAAIEGQIAQLESAPAAGGQRQDAIDRVLVLIANLQNDVADAAESTPSYDRRQYAEGIRTL HDKVNEAVARVTPKSRFQFKRPAAKVGGVASASSDTDARLHRLGASRQHDAVAAAATTTDDNDDTAHKSHVEKDY NKDLASHGASCVRRPSFSAAKIISISEQKDLHIILPPLTAQATASGSLTGLRSCIVDMSQATANTKSFAGLALKD ISKSLLVTGRVNGPVHITGVCNSILVVVARQVRIHECRGVDIYLHCSSHPIIEDCTEMRFAPLPPCLSGDAESAT ENQWDQVDDFKWLKTGHSPNWSILPETQQVGNDVWIKMLQSPANVSVEKTLSQIGLPS* |
| Coding | >OphauB2|6596 ATGGACTCGAGCCAGAGCTTCTACAGAAGCTTCCAAGACAAGGTCGCTGCCATTGAGGGGCAGATTGCGCAGCTC GAGTCGGCACCTGCTGCTGGCGGCCAGCGACAAGACGCCATCGACAGAGTCTTGGTCCTGATTGCCAATCTGCAA AACGACGTGGCCGACGCTGCCGAGTCGACGCCCTCGTACGACCGCCGACAGTATGCCGAGGGCATCAGGACCCTA CATGACAAAGTCAACGAGGCCGTCGCTAGAGTCACGCCCAAGTCACGCTTTCAATTCAAACGCCCAGCGGCAAAG GTGGGTGGTGTTGCCTCGGCATCGTCGGATACGGATGCGCGTCTCCATCGTCTAGGCGCGTCACGCCAACACGAT GCTGTTGCGGCGGCGGCGACGACGACTGACGACAATGACGACACTGCACACAAGAGTCACGTAGAAAAGGACTAC AACAAGGACCTGGCTAGCCATGGCGCGTCGTGCGTGCGCAGACCCAGCTTCTCGGCAGCAAAAATTATTTCGATT TCAGAGCAAAAGGACCTGCATATAATCCTGCCTCCTTTGACCGCCCAAGCCACAGCGTCCGGCAGTCTCACAGGC CTGCGCAGCTGCATAGTCGACATGTCGCAAGCAACAGCCAACACAAAGTCCTTTGCAGGGCTTGCGCTCAAGGAC ATTTCCAAAAGCCTCCTTGTTACCGGTCGCGTCAATGGGCCGGTGCACATTACCGGAGTCTGCAACAGCATTCTC GTCGTCGTTGCTCGGCAGGTGCGGATTCACGAGTGTAGAGGCGTCGATATTTACTTGCATTGCAGTAGCCACCCC ATCATTGAAGATTGCACCGAGATGCGCTTTGCGCCACTGCCACCCTGCCTTTCAGGCGACGCAGAGTCGGCCACG GAGAACCAATGGGACCAGGTAGACGACTTCAAGTGGCTCAAAACAGGCCACAGTCCCAATTGGTCCATTCTCCCC GAGACGCAACAGGTGGGCAATGACGTTTGGATAAAGATGCTGCAAAGCCCGGCAAATGTAAGCGTCGAAAAGACT CTCAGTCAAATCGGGCTGCCGTCATAG |
| Transcript | >OphauB2|6596 ATGGACTCGAGCCAGAGCTTCTACAGAAGCTTCCAAGACAAGGTCGCTGCCATTGAGGGGCAGATTGCGCAGCTC GAGTCGGCACCTGCTGCTGGCGGCCAGCGACAAGACGCCATCGACAGAGTCTTGGTCCTGATTGCCAATCTGCAA AACGACGTGGCCGACGCTGCCGAGTCGACGCCCTCGTACGACCGCCGACAGTATGCCGAGGGCATCAGGACCCTA CATGACAAAGTCAACGAGGCCGTCGCTAGAGTCACGCCCAAGTCACGCTTTCAATTCAAACGCCCAGCGGCAAAG GTGGGTGGTGTTGCCTCGGCATCGTCGGATACGGATGCGCGTCTCCATCGTCTAGGCGCGTCACGCCAACACGAT GCTGTTGCGGCGGCGGCGACGACGACTGACGACAATGACGACACTGCACACAAGAGTCACGTAGAAAAGGACTAC AACAAGGACCTGGCTAGCCATGGCGCGTCGTGCGTGCGCAGACCCAGCTTCTCGGCAGCAAAAATTATTTCGATT TCAGAGCAAAAGGACCTGCATATAATCCTGCCTCCTTTGACCGCCCAAGCCACAGCGTCCGGCAGTCTCACAGGC CTGCGCAGCTGCATAGTCGACATGTCGCAAGCAACAGCCAACACAAAGTCCTTTGCAGGGCTTGCGCTCAAGGAC ATTTCCAAAAGCCTCCTTGTTACCGGTCGCGTCAATGGGCCGGTGCACATTACCGGAGTCTGCAACAGCATTCTC GTCGTCGTTGCTCGGCAGGTGCGGATTCACGAGTGTAGAGGCGTCGATATTTACTTGCATTGCAGTAGCCACCCC ATCATTGAAGATTGCACCGAGATGCGCTTTGCGCCACTGCCACCCTGCCTTTCAGGCGACGCAGAGTCGGCCACG GAGAACCAATGGGACCAGGTAGACGACTTCAAGTGGCTCAAAACAGGCCACAGTCCCAATTGGTCCATTCTCCCC GAGACGCAACAGGTGGGCAATGACGTTTGGATAAAGATGCTGCAAAGCCCGGCAAATGTAAGCGTCGAAAAGACT CTCAGTCAAATCGGGCTGCCGTCATAG |
| Gene | >OphauB2|6596 ATGGACTCGAGCCAGAGCTTCTACAGAAGCTTCCAAGACAAGGTCGCTGGTAGGTGGGCGCAGGCGAGCCATTTC TCCATGCTCTGTTGCTGACCCAGTCTTGCTCCTGCTCAGCCATTGAGGGGCAGATTGCGCAGCTCGAGTCGGCAC CTGCTGCTGGCGGCCAGCGACAAGACGCCATCGACAGAGTCTTGGTCCTGATTGCCAATCTGCAAAACGACGTGG CCGACGCTGCCGAGTCGACGCCCTCGTACGACCGCCGACAGTATGCCGAGGTTTGATCTTGGTCCTGCTCGCCCA TCAGGGTGGTTGCATCTAACGGGAGCAGGGCATCAGGACCCTACATGACAAAGTCAACGAGGCCGTCGCTAGAGT CACGCCCAAGTCACGCTTTCAATTCAAACGCCCAGCGGCAAAGGTGGGTGGTGTTGCCTCGGCATCGTCGGATAC GGATGCGCGTCTCCATCGTCTAGGCGCGTCACGCCAACACGATGCTGTTGCGGCGGCGGCGACGACGACTGACGA CAATGACGACACTGCACACAAGAGTCACGTAGAAAAGGACTACAACAAGGACCTGGCTAGCCATGGCGCGTCGTG CGTGCGCAGACCCAGCTTCTCGGCAGCAAAAATTATTTCGATTTCAGAGCAAAAGGACCTGCATATAATCCTGCC TCCTTTGACCGCCCAAGCCACAGCGTCCGGCAGTCTCACAGGCCTGCGCAGCTGCATAGTCGACATGTCGCAAGC AACAGCCAACACAAAGTCCTTTGCAGGGCTTGCGCTCAAGGACATTTCCAAAAGCCTCCTTGTTACCGGTCGCGT CAATGGGCCGGTGCACATTACCGGAGTCTGCAACAGCATTCTCGTCGTCGTTGCTCGGCAGGTGCGGATTCACGA GTGTAGAGGCGTCGATATTTACTTGCATTGCAGTAGCCACCCCATCATTGAAGATTGCACCGAGATGCGCTTTGC GCCACTGCCACCCTGCCTTGTAAGTAGAGTAGCAGTGTGTTTTGCATGCCGTGGCCGAGTCGGTACAGCTAACGA CGCAAATGAGCAGTCAGGCGACGCAGAGTCGGCCACGGAGAACCAATGGGACCAGGTAGACGACTTCAAGTGGCT CAAAACAGGCCACAGTCCCAATTGGTCCATTCTCCCCGAGACGCAACAGGTGGGCAATGACGTTTGGATAAAGAT GCTGCAAAGCCCGGCAAATGTAAGCGTCGAAAAGACTCTCAGTCAAATCGGGCTGCCGTCATAG |