© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | OphauB2|6578 |
| Gene name | |
| Location | Contig_60:89707..90833 |
| Strand | + |
| Gene length (bp) | 1126 |
| Transcript length (bp) | 996 |
| Coding sequence length (bp) | 996 |
| Protein length (aa) | 332 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00800 | PDT | Prephenate dehydratase | 1.4E-58 | 10 | 226 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O67085|PHEA_AQUAE | P-protein OS=Aquifex aeolicus (strain VF5) GN=pheA PE=3 SV=1 | 2 | 327 | 5.0E-40 |
| sp|Q9HZ67|PHEA_PSEAE | P-protein OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=pheA PE=3 SV=1 | 10 | 327 | 2.0E-37 |
| sp|Q9ZHY3|PHEA_NEIG1 | P-protein OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN=pheA PE=3 SV=2 | 10 | 327 | 5.0E-36 |
| sp|P27603|PHEA_PSEST | P-protein OS=Pseudomonas stutzeri GN=pheA PE=3 SV=2 | 10 | 327 | 7.0E-36 |
| sp|O14361|PHA2_SCHPO | Putative prephenate dehydratase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pha2 PE=3 SV=2 | 10 | 297 | 1.0E-35 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O67085|PHEA_AQUAE | P-protein OS=Aquifex aeolicus (strain VF5) GN=pheA PE=3 SV=1 | 2 | 327 | 5.0E-40 |
| sp|Q9HZ67|PHEA_PSEAE | P-protein OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=pheA PE=3 SV=1 | 10 | 327 | 2.0E-37 |
| sp|Q9ZHY3|PHEA_NEIG1 | P-protein OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN=pheA PE=3 SV=2 | 10 | 327 | 5.0E-36 |
| sp|P27603|PHEA_PSEST | P-protein OS=Pseudomonas stutzeri GN=pheA PE=3 SV=2 | 10 | 327 | 7.0E-36 |
| sp|O14361|PHA2_SCHPO | Putative prephenate dehydratase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pha2 PE=3 SV=2 | 10 | 297 | 1.0E-35 |
| sp|Q58054|PHEA_METJA | Prephenate dehydratase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=pheA PE=1 SV=1 | 10 | 299 | 1.0E-29 |
| sp|P32452|PHA2_YEAST | Putative prephenate dehydratase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PHA2 PE=1 SV=3 | 2 | 295 | 4.0E-27 |
| sp|P21203|PHEA_BACSU | Prephenate dehydratase OS=Bacillus subtilis (strain 168) GN=pheA PE=3 SV=1 | 10 | 328 | 3.0E-26 |
| sp|P0A9K0|PHEA_SHIFL | P-protein OS=Shigella flexneri GN=pheA PE=3 SV=1 | 10 | 327 | 6.0E-25 |
| sp|P0A9J8|PHEA_ECOLI | P-protein OS=Escherichia coli (strain K12) GN=pheA PE=1 SV=1 | 10 | 327 | 6.0E-25 |
| sp|P0A9J9|PHEA_ECO57 | P-protein OS=Escherichia coli O157:H7 GN=pheA PE=3 SV=1 | 10 | 327 | 6.0E-25 |
| sp|Q9SA96|AROD1_ARATH | Arogenate dehydratase/prephenate dehydratase 1, chloroplastic OS=Arabidopsis thaliana GN=ADT1 PE=1 SV=1 | 5 | 327 | 2.0E-23 |
| sp|Q9SSE7|AROD2_ARATH | Arogenate dehydratase/prephenate dehydratase 2, chloroplastic OS=Arabidopsis thaliana GN=ADT2 PE=1 SV=1 | 10 | 327 | 3.0E-23 |
| sp|P43900|PHEA_HAEIN | P-protein OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=pheA PE=3 SV=1 | 10 | 327 | 7.0E-23 |
| sp|Q02286|PHEA_ENTAG | P-protein OS=Enterobacter agglomerans GN=pheA PE=3 SV=1 | 10 | 327 | 8.0E-23 |
| sp|Q9CEU2|PHEA_LACLA | Prephenate dehydratase OS=Lactococcus lactis subsp. lactis (strain IL1403) GN=pheA PE=3 SV=1 | 10 | 327 | 1.0E-21 |
| sp|Q8K9F8|PHEA_BUCAP | P-protein OS=Buchnera aphidicola subsp. Schizaphis graminum (strain Sg) GN=pheA PE=3 SV=1 | 11 | 327 | 2.0E-20 |
| sp|Q9CDC4|PHEA_MYCLE | Prephenate dehydratase OS=Mycobacterium leprae (strain TN) GN=pheA PE=3 SV=1 | 10 | 327 | 4.0E-20 |
| sp|B8ZTU2|PHEA_MYCLB | Prephenate dehydratase OS=Mycobacterium leprae (strain Br4923) GN=pheA PE=3 SV=1 | 10 | 327 | 4.0E-20 |
| sp|A4T6G3|PHEA_MYCGI | Prephenate dehydratase OS=Mycobacterium gilvum (strain PYR-GCK) GN=pheA PE=3 SV=1 | 8 | 327 | 1.0E-19 |
| sp|A0R643|PHEA_MYCS2 | Prephenate dehydratase OS=Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155) GN=pheA PE=3 SV=1 | 8 | 327 | 2.0E-19 |
| sp|P43909|PHEA_LACLM | Prephenate dehydratase OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=pheA PE=3 SV=1 | 10 | 327 | 5.0E-18 |
| sp|P9WIC3|PHEA_MYCTU | Prephenate dehydratase OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) GN=pheA PE=1 SV=1 | 10 | 327 | 6.0E-18 |
| sp|Q7TVJ6|PHEA_MYCBO | Prephenate dehydratase OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) GN=pheA PE=1 SV=1 | 10 | 327 | 6.0E-18 |
| sp|A1KQH3|PHEA_MYCBP | Prephenate dehydratase OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=pheA PE=3 SV=1 | 10 | 327 | 6.0E-18 |
| sp|P9WIC2|PHEA_MYCTO | Prephenate dehydratase OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) GN=pheA PE=3 SV=1 | 10 | 327 | 6.0E-18 |
| sp|A5U9G7|PHEA_MYCTA | Prephenate dehydratase OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=pheA PE=3 SV=1 | 10 | 327 | 6.0E-18 |
| sp|P57472|PHEA_BUCAI | P-protein OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS) GN=pheA PE=3 SV=1 | 11 | 327 | 9.0E-18 |
| sp|Q89AE5|PHEA_BUCBP | P-protein OS=Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp) GN=pheA PE=3 SV=1 | 10 | 297 | 1.0E-17 |
| sp|A1TGX7|PHEA_MYCVP | Prephenate dehydratase OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) GN=pheA PE=3 SV=1 | 8 | 327 | 4.0E-17 |
| sp|Q44104|PHEA_AMYME | Prephenate dehydratase OS=Amycolatopsis methanolica GN=pheA PE=3 SV=1 | 10 | 330 | 5.0E-17 |
| sp|B2HMM5|PHEA_MYCMM | Prephenate dehydratase OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=pheA PE=3 SV=1 | 10 | 327 | 9.0E-16 |
| sp|A0PX17|PHEA_MYCUA | Prephenate dehydratase OS=Mycobacterium ulcerans (strain Agy99) GN=pheA PE=3 SV=1 | 10 | 327 | 1.0E-15 |
| sp|Q9SGD6|AROD6_ARATH | Arogenate dehydratase/prephenate dehydratase 6, chloroplastic OS=Arabidopsis thaliana GN=ADT6 PE=1 SV=1 | 10 | 327 | 2.0E-15 |
| sp|O22241|AROD4_ARATH | Arogenate dehydratase 4, chloroplastic OS=Arabidopsis thaliana GN=ADT4 PE=1 SV=1 | 10 | 327 | 4.0E-15 |
| sp|Q9ZUY3|AROD3_ARATH | Arogenate dehydratase 3, chloroplastic OS=Arabidopsis thaliana GN=ADT3 PE=1 SV=1 | 10 | 327 | 6.0E-15 |
| sp|Q745J2|PHEA_MYCPA | Prephenate dehydratase OS=Mycobacterium paratuberculosis (strain ATCC BAA-968 / K-10) GN=pheA PE=3 SV=1 | 10 | 327 | 1.0E-14 |
| sp|A0Q994|PHEA_MYCA1 | Prephenate dehydratase OS=Mycobacterium avium (strain 104) GN=pheA PE=3 SV=1 | 10 | 327 | 1.0E-14 |
| sp|A3Q7Q1|PHEA_MYCSJ | Prephenate dehydratase OS=Mycobacterium sp. (strain JLS) GN=pheA PE=3 SV=1 | 8 | 327 | 1.0E-14 |
| sp|Q1B1U6|PHEA_MYCSS | Prephenate dehydratase OS=Mycobacterium sp. (strain MCS) GN=pheA PE=3 SV=1 | 8 | 327 | 1.0E-14 |
| sp|A1UNA3|PHEA_MYCSK | Prephenate dehydratase OS=Mycobacterium sp. (strain KMS) GN=pheA PE=3 SV=1 | 8 | 327 | 1.0E-14 |
| sp|Q9FNJ8|AROD5_ARATH | Arogenate dehydratase 5, chloroplastic OS=Arabidopsis thaliana GN=ADT5 PE=1 SV=1 | 10 | 327 | 4.0E-14 |
| sp|B1MEG8|PHEA_MYCA9 | Prephenate dehydratase OS=Mycobacterium abscessus (strain ATCC 19977 / DSM 44196 / CIP 104536 / JCM 13569 / NCTC 13031 / TMC 1543) GN=pheA PE=3 SV=1 | 10 | 329 | 6.0E-13 |
| sp|P10341|PHEA_CORGL | Prephenate dehydratase OS=Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 / LMG 3730 / NCIMB 10025) GN=pheA PE=3 SV=2 | 4 | 331 | 8.0E-12 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0004664 | prephenate dehydratase activity | Yes |
| GO:0009094 | L-phenylalanine biosynthetic process | Yes |
| GO:1901607 | alpha-amino acid biosynthetic process | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0009073 | aromatic amino acid family biosynthetic process | No |
| GO:0043436 | oxoacid metabolic process | No |
| GO:0008652 | cellular amino acid biosynthetic process | No |
| GO:1901576 | organic substance biosynthetic process | No |
| GO:0006520 | cellular amino acid metabolic process | No |
| GO:0046394 | carboxylic acid biosynthetic process | No |
| GO:0016829 | lyase activity | No |
| GO:1901605 | alpha-amino acid metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0008150 | biological_process | No |
| GO:1902223 | erythrose 4-phosphate/phosphoenolpyruvate family amino acid biosynthetic process | No |
| GO:0006558 | L-phenylalanine metabolic process | No |
| GO:0006082 | organic acid metabolic process | No |
| GO:0019752 | carboxylic acid metabolic process | No |
| GO:0006725 | cellular aromatic compound metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:1901564 | organonitrogen compound metabolic process | No |
| GO:0009058 | biosynthetic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0009987 | cellular process | No |
| GO:1901362 | organic cyclic compound biosynthetic process | No |
| GO:0008152 | metabolic process | No |
| GO:0016053 | organic acid biosynthetic process | No |
| GO:1901566 | organonitrogen compound biosynthetic process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:1902221 | erythrose 4-phosphate/phosphoenolpyruvate family amino acid metabolic process | No |
| GO:0044281 | small molecule metabolic process | No |
| GO:0044249 | cellular biosynthetic process | No |
| GO:0016835 | carbon-oxygen lyase activity | No |
| GO:0009095 | aromatic amino acid family biosynthetic process, prephenate pathway | No |
| GO:0016836 | hydro-lyase activity | No |
| GO:0009072 | aromatic amino acid family metabolic process | No |
| GO:0044283 | small molecule biosynthetic process | No |
| GO:0003824 | catalytic activity | No |
| GO:0019438 | aromatic compound biosynthetic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 19 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauB2|6578 MMASDAKPVVSFLGPVASFSHQAVRQTFSEDGWVLRPVTTIDDVFDQVQQRQALLGVVPFENSTNGSVVFTLDNL ADRNGRYKDISVNGEIYVEVEHCLLGHKTPAPAPAASTGNSGADTPTPTDPVPQGPKTQPLSSLRHIKRLYSHPQ AFGQCHAFISAHLKEAETFDTSSTSQAAEIVSRDQTGTWAAISNIMAASVQGLDVLHRAIQDRQDNTTRFLVIGS SPSLPKDDRLLAQPQIAGSKSLISFTVPHSSPGALAVVLGCFHDFNLNLTSINSRPSLLEPFQYIFFVEFEGHRL EDADGRVKGALRKIDLVAESSRWLGSWRRCR* |
| Coding | >OphauB2|6578 ATGATGGCTTCTGACGCCAAGCCCGTCGTCAGCTTTCTGGGCCCTGTTGCCTCATTTTCACACCAGGCTGTCCGT CAGACCTTTTCAGAAGACGGCTGGGTCTTGCGGCCCGTCACCACCATAGATGATGTCTTTGATCAGGTCCAACAG CGGCAAGCCCTGCTGGGCGTCGTGCCGTTTGAAAACTCAACCAACGGCTCTGTAGTCTTTACCCTGGACAACTTG GCCGACCGGAATGGCCGGTATAAAGACATTAGCGTCAATGGCGAGATCTATGTCGAGGTCGAGCACTGCCTGCTC GGACACAAAACACCAGCTCCGGCTCCGGCCGCCTCCACTGGCAACTCCGGAGCTGATACTCCGACCCCTACCGAT CCGGTACCCCAGGGGCCAAAGACGCAGCCGCTCAGCAGCTTGCGACACATCAAGAGGCTGTATTCGCACCCGCAA GCCTTTGGCCAGTGCCACGCATTCATCTCTGCCCACCTCAAGGAAGCTGAGACATTCGACACCAGCTCTACCAGC CAAGCCGCCGAGATTGTCAGCCGGGACCAGACGGGAACATGGGCTGCCATTTCCAACATCATGGCCGCTAGCGTC CAGGGCCTTGATGTCCTCCACAGGGCCATTCAGGACCGCCAGGACAATACTACTCGCTTTCTCGTCATTGGGTCC AGTCCGTCTCTGCCCAAGGATGACAGGCTTCTCGCGCAGCCCCAGATTGCTGGTAGCAAGTCGCTCATTTCCTTT ACCGTGCCTCACTCGAGTCCTGGAGCGCTGGCTGTAGTGCTGGGCTGCTTCCACGATTTCAATCTCAATCTGACG AGCATAAACAGCCGGCCTAGTCTGTTGGAACCTTTTCAGTATATATTCTTTGTGGAGTTTGAGGGCCATCGGCTA GAAGATGCCGACGGAAGGGTTAAAGGGGCACTGCGCAAAATTGATCTTGTTGCCGAGAGCTCAAGGTGGCTTGGC AGCTGGAGACGATGTAGATGA |
| Transcript | >OphauB2|6578 ATGATGGCTTCTGACGCCAAGCCCGTCGTCAGCTTTCTGGGCCCTGTTGCCTCATTTTCACACCAGGCTGTCCGT CAGACCTTTTCAGAAGACGGCTGGGTCTTGCGGCCCGTCACCACCATAGATGATGTCTTTGATCAGGTCCAACAG CGGCAAGCCCTGCTGGGCGTCGTGCCGTTTGAAAACTCAACCAACGGCTCTGTAGTCTTTACCCTGGACAACTTG GCCGACCGGAATGGCCGGTATAAAGACATTAGCGTCAATGGCGAGATCTATGTCGAGGTCGAGCACTGCCTGCTC GGACACAAAACACCAGCTCCGGCTCCGGCCGCCTCCACTGGCAACTCCGGAGCTGATACTCCGACCCCTACCGAT CCGGTACCCCAGGGGCCAAAGACGCAGCCGCTCAGCAGCTTGCGACACATCAAGAGGCTGTATTCGCACCCGCAA GCCTTTGGCCAGTGCCACGCATTCATCTCTGCCCACCTCAAGGAAGCTGAGACATTCGACACCAGCTCTACCAGC CAAGCCGCCGAGATTGTCAGCCGGGACCAGACGGGAACATGGGCTGCCATTTCCAACATCATGGCCGCTAGCGTC CAGGGCCTTGATGTCCTCCACAGGGCCATTCAGGACCGCCAGGACAATACTACTCGCTTTCTCGTCATTGGGTCC AGTCCGTCTCTGCCCAAGGATGACAGGCTTCTCGCGCAGCCCCAGATTGCTGGTAGCAAGTCGCTCATTTCCTTT ACCGTGCCTCACTCGAGTCCTGGAGCGCTGGCTGTAGTGCTGGGCTGCTTCCACGATTTCAATCTCAATCTGACG AGCATAAACAGCCGGCCTAGTCTGTTGGAACCTTTTCAGTATATATTCTTTGTGGAGTTTGAGGGCCATCGGCTA GAAGATGCCGACGGAAGGGTTAAAGGGGCACTGCGCAAAATTGATCTTGTTGCCGAGAGCTCAAGGTGGCTTGGC AGCTGGAGACGATGTAGATGA |
| Gene | >OphauB2|6578 ATGATGGCTTCTGACGCCAAGCCCGTCGTCAGCTTTCTGGGCCCTGTTGCCTCATTTTCACACCAGGTCGTTGCC GTTTGACCCGCCCCCGCTCGTCTCTCGACGCTATGGCTAACCTTGCAAGCATTCCAGGCTGTCCGTCAGACCTTT TCAGAAGACGGCTGGGTCTTGCGGCCCGTCACCACCATAGATGGTAGATGCTTTCAGAAGTCTGTCTGGTTTGCC AGCCCGGCCTCTTACTAACTCCTTGTCCCTAGATGTCTTTGATCAGGTCCAACAGCGGCAAGCCCTGCTGGGCGT CGTGCCGTTTGAAAACTCAACCAACGGCTCTGTAGTCTTTACCCTGGACAACTTGGCCGACCGGAATGGCCGGTA TAAAGACATTAGCGTCAATGGCGAGATCTATGTCGAGGTCGAGCACTGCCTGCTCGGACACAAAACACCAGCTCC GGCTCCGGCCGCCTCCACTGGCAACTCCGGAGCTGATACTCCGACCCCTACCGATCCGGTACCCCAGGGGCCAAA GACGCAGCCGCTCAGCAGCTTGCGACACATCAAGAGGCTGTATTCGCACCCGCAAGCCTTTGGCCAGTGCCACGC ATTCATCTCTGCCCACCTCAAGGAAGCTGAGACATTCGACACCAGCTCTACCAGCCAAGCCGCCGAGATTGTCAG CCGGGACCAGACGGGAACATGGGCTGCCATTTCCAACATCATGGCCGCTAGCGTCCAGGGCCTTGATGTCCTCCA CAGGGCCATTCAGGACCGCCAGGACAATACTACTCGCTTTCTCGTCATTGGGTCCAGTCCGTCTCTGCCCAAGGA TGACAGGCTTCTCGCGCAGCCCCAGATTGCTGGTAGCAAGTCGCTCATTTCCTTTACCGTGCCTCACTCGAGTCC TGGAGCGCTGGCTGTAGTGCTGGGCTGCTTCCACGATTTCAATCTCAATCTGACGAGCATAAACAGCCGGCCTAG TCTGTTGGAACCTTTTCAGTATATATTCTTTGTGGAGTTTGAGGGCCATCGGCTAGAAGATGCCGACGGAAGGGT TAAAGGGGCACTGCGCAAAATTGATCTTGTTGCCGAGAGCTCAAGGTGGCTTGGCAGCTGGAGACGATGTAGATG A |